diff --git a/dot_config/conda/env-configs/giab-tools.yml b/dot_config/conda/env-configs/giab-tools.yml new file mode 100644 index 0000000..c648f11 --- /dev/null +++ b/dot_config/conda/env-configs/giab-tools.yml @@ -0,0 +1,11 @@ +name: giab-tools +channels: + - conda-forge + - bioconda +dependencies: + - bedtools=2.30.0 + - samtools=1.15.1 + - vcftools=0.1.16 + - globus-cli=3.11.0 + - jupyter_server=2.0.1 + - notebook=6.5.3 diff --git a/dot_config/conda/env-configs/python-dev.yml b/dot_config/conda/env-configs/python-dev.yml new file mode 100644 index 0000000..7e188cd --- /dev/null +++ b/dot_config/conda/env-configs/python-dev.yml @@ -0,0 +1,10 @@ +# minimal requirements for developing python scripts +name: python-dev +channels: + - conda-forge +dependencies: + - python=3.11 + - black=23.1.0 + - flake8=6.0.0 + - mypy=1.1.1 + - ipython=8.11.0 diff --git a/dot_config/conda/env-configs/r-dev.yml b/dot_config/conda/env-configs/r-dev.yml new file mode 100644 index 0000000..aefc41a --- /dev/null +++ b/dot_config/conda/env-configs/r-dev.yml @@ -0,0 +1,10 @@ +# minimal requirements for developing r scripts +name: r-dev +channels: + - conda-forge +dependencies: + - r-base=4.2.2 + - r-tidyverse=2.0.0 + - r-styler=1.9.1 + - r-lintr=3.0.2 + - r-ggpubr=0.6.0