From b4b8a88f12f92ec593b559fd8b76cce20039ed1d Mon Sep 17 00:00:00 2001
From: ndwarshuis <ndwar@yavin4.ch>
Date: Fri, 10 Mar 2023 12:13:14 -0500
Subject: [PATCH] ADD conda envs for various misdeeds

---
 dot_config/conda/env-configs/giab-tools.yml | 11 +++++++++++
 dot_config/conda/env-configs/python-dev.yml | 10 ++++++++++
 dot_config/conda/env-configs/r-dev.yml      | 10 ++++++++++
 3 files changed, 31 insertions(+)
 create mode 100644 dot_config/conda/env-configs/giab-tools.yml
 create mode 100644 dot_config/conda/env-configs/python-dev.yml
 create mode 100644 dot_config/conda/env-configs/r-dev.yml

diff --git a/dot_config/conda/env-configs/giab-tools.yml b/dot_config/conda/env-configs/giab-tools.yml
new file mode 100644
index 0000000..c648f11
--- /dev/null
+++ b/dot_config/conda/env-configs/giab-tools.yml
@@ -0,0 +1,11 @@
+name: giab-tools
+channels:
+  - conda-forge
+  - bioconda
+dependencies:
+  - bedtools=2.30.0
+  - samtools=1.15.1
+  - vcftools=0.1.16
+  - globus-cli=3.11.0
+  - jupyter_server=2.0.1
+  - notebook=6.5.3
diff --git a/dot_config/conda/env-configs/python-dev.yml b/dot_config/conda/env-configs/python-dev.yml
new file mode 100644
index 0000000..7e188cd
--- /dev/null
+++ b/dot_config/conda/env-configs/python-dev.yml
@@ -0,0 +1,10 @@
+# minimal requirements for developing python scripts
+name: python-dev
+channels:
+  - conda-forge
+dependencies:
+  - python=3.11
+  - black=23.1.0
+  - flake8=6.0.0
+  - mypy=1.1.1
+  - ipython=8.11.0
diff --git a/dot_config/conda/env-configs/r-dev.yml b/dot_config/conda/env-configs/r-dev.yml
new file mode 100644
index 0000000..aefc41a
--- /dev/null
+++ b/dot_config/conda/env-configs/r-dev.yml
@@ -0,0 +1,10 @@
+# minimal requirements for developing r scripts
+name: r-dev
+channels:
+  - conda-forge
+dependencies:
+  - r-base=4.2.2
+  - r-tidyverse=2.0.0
+  - r-styler=1.9.1
+  - r-lintr=3.0.2
+  - r-ggpubr=0.6.0