ndwarshuis
/
dotfiles
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Compare commits

base: ndwarshuis:325b35b013f7962c2ad5ec00f2a002a582ffeb10
Branches Tags
ndwarshuis:master
...
compare: ndwarshuis:a0b5de076940e816bf130791f4683198f1ede734
Branches Tags
ndwarshuis:master

2 Commits
325b35b013 ... a0b5de0769

Author SHA1 Message Date
Nathan Dwarshuis a0b5de0769 ADD useful conda aliases 2023-03-16 16:04:40 -04:00
Nathan Dwarshuis 802f776654 ENH update giab tools 2023-03-16 16:02:20 -04:00
2 changed files with 7 additions and 0 deletions
Show Stats Expand all files Collapse all files

3
dot_config/conda/env-configs/giab-tools.yml
View File

@ -5,7 +5,10 @@ channels:
dependencies: dependencies:
- bedtools=2.30.0 - bedtools=2.30.0
- samtools=1.15.1 - samtools=1.15.1
- bcftools=1.16
- vcftools=0.1.16 - vcftools=0.1.16
- globus-cli=3.11.0 - globus-cli=3.11.0
- jupyter_server=2.0.1 - jupyter_server=2.0.1
- notebook=6.5.3 - notebook=6.5.3
- dvc=2.49.0
- dvc-s3=2.21.0

4
dot_config/zsh/dot_zshrc.tmpl
View File

@ -451,6 +451,10 @@ zsh-rbenv () {
zsh-conda () { zsh-conda () {
if [[ -x $XDG_DATA_HOME/mambaforge/bin/conda ]]; then if [[ -x $XDG_DATA_HOME/mambaforge/bin/conda ]]; then
eval "$($XDG_DATA_HOME/mambaforge/bin/conda shell.zsh hook)" eval "$($XDG_DATA_HOME/mambaforge/bin/conda shell.zsh hook)"
alias cdd="conda deactivate"
alias cda="conda activate"
alias cde="conda env"
alias cdl="conda list"
else else
echo "conda installation not found" echo "conda installation not found"
fi fi