81 lines
2.6 KiB
Bash
81 lines
2.6 KiB
Bash
#! /bin/bash
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# Run R interpreter, optionally launching inside a docker container
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# Launch in docker iff a file called '.rundocker' exists and contains
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# the name of a valid image in the current directory
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## TODO the env args here are not DRY
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system_r=(env "MAKEFLAGS=-j8" /bin/R --quiet "$@")
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# launch in docker if we find a .rundocker file
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if [ -f ".rundocker" ]; then
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image=$(cat .rundocker)
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if ! docker info > /dev/null 2>&1; then
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echo "Docker daemon not running"
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echo "Using Systemwide R Installation"
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"${system_r[@]}"
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fi
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if ! docker image inspect "$image" > /dev/null 2>&1; then
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echo "Invalid image: $image"
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echo "Using Systemwide R Installation"
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"${system_r[@]}"
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fi
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# TODO what about host user's environ file and such?
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# TODO not all images have a docker user
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# start container using the docker user
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user=docker
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# start container in docker's home directory
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work_dir=/home/docker
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# mount the current host directory to docker's user home
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pwd_mnt="type=bind,source=$(pwd),target=/home/docker"
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# add X11 socket/env so we can see pretty plots
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# from here https://github.com/rocker-org/rocker-versioned/tree/master/X11
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xsock=/tmp/.X11-unix/X0
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xauth=/tmp/.docker.xauth
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touch "$xauth"
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xauth nlist "$DISPLAY" | sed -e 's/^..../ffff/' | \
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xauth -f "$xauth" nmerge -
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x11=(-v "$xsock:$xsock"
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-v "$xauth:$xauth"
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-e "XAUTHORITY=${xauth}"
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-e "DISPLAY=$DISPLAY")
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# for some reason this won't work if you aren't root
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opts=(-ti --rm -w "$work_dir" --mount "$pwd_mnt" -u 0 #--user "$user"
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"${x11[@]}")
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# TODO not all images have the same path for R
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# TODO add env vars somehow
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cmd=(/usr/local/bin/R --quiet "$@")
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# if we are in Emacs, do some special tricks to satisfy ESS
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if [[ -n "$INSIDE_EMACS" ]]; then
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# TODO do we need to pass any environmental variables?
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# ESS sends some 'source' commands to the running R process
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# after it starts; these are in the emacs user directory
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emacs_home="$XDG_CONFIG_HOME/emacs"
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emacs_mnt="type=bind,source=$emacs_home,target=$emacs_home"
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opts+=(--mount "$emacs_mnt")
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# ESS gets confused if lines are terminated with \r\n (which
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# unfortunately is the default in docker). Set the terminal
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# to not echo inputs before starting R
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docker run "${opts[@]}" "$image" /bin/sh -c "stty -echo -onlcr && ${cmd[*]}"
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else
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docker run "${opts[@]}" "$image" "${cmd[@]}"
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fi
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## remove X11 auth file
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rm -f "$xauth"
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else
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"${system_r[@]}"
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fi
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