org-mode/lisp/ob-sql.el

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;;; ob-sql.el --- Babel Functions for SQL -*- lexical-binding: t; -*-
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;; Copyright (C) 2009-2016 Free Software Foundation, Inc.
;; Author: Eric Schulte
;; Keywords: literate programming, reproducible research
;; Homepage: http://orgmode.org
;; This file is part of GNU Emacs.
;; GNU Emacs is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.
;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;; GNU General Public License for more details.
;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
;;; Commentary:
;; Org-Babel support for evaluating sql source code.
;; (see also ob-sqlite.el)
;;
;; SQL is somewhat unique in that there are many different engines for
;; the evaluation of sql (Mysql, PostgreSQL, etc...), so much of this
;; file will have to be implemented engine by engine.
;;
;; Also SQL evaluation generally takes place inside of a database.
;;
;; Header args used:
;; - engine
;; - cmdline
;; - dbhost
;; - dbport
;; - dbuser
;; - dbpassword
;; - database
;; - colnames (default, nil, means "yes")
;; - result-params
;; - out-file
;; The following are used but not really implemented for SQL:
;; - colname-names
;; - rownames
;; - rowname-names
;;
;; TODO:
;;
;; - support for sessions
;; - support for more engines (currently only supports mysql)
;; - what's a reasonable way to drop table data into SQL?
;;
;;; Code:
(require 'ob)
(declare-function org-table-import "org-table" (file arg))
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(declare-function orgtbl-to-csv "org-table" (table params))
(declare-function org-table-to-lisp "org-table" (&optional txt))
(declare-function cygwin-convert-file-name-to-windows "cygw32.c" (file &optional absolute-p))
(defvar org-babel-default-header-args:sql '())
(defconst org-babel-header-args:sql
'((engine . :any)
(out-file . :any)
(dbhost . :any)
(dbport . :any)
(dbuser . :any)
(dbpassword . :any)
(database . :any))
"SQL-specific header arguments.")
(defun org-babel-expand-body:sql (body params)
"Expand BODY according to the values of PARAMS."
(org-babel-sql-expand-vars
babel: small change in API. * lisp/ob-core.el (org-babel--get-vars): New function. (org-babel-get-header): Delete. * lisp/ob-C.el (org-babel-C-expand-C): (org-babel-C-expand-D): * lisp/ob-R.el (org-babel-variable-assignments:R): * lisp/ob-abc.el (org-babel-expand-body:abc): * lisp/ob-asymptote.el (org-babel-variable-assignments:asymptote): * lisp/ob-awk.el (org-babel-execute:awk): * lisp/ob-calc.el (org-babel-execute:calc): * lisp/ob-clojure.el (org-babel-expand-body:clojure): * lisp/ob-dot.el (org-babel-expand-body:dot): * lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp): * lisp/ob-fortran.el (org-babel-expand-body:fortran): (org-babel-fortran-ensure-main-wrap): * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): * lisp/ob-haskell.el (org-babel-variable-assignments:haskell): * lisp/ob-js.el (org-babel-variable-assignments:js): * lisp/ob-latex.el (org-babel-expand-body:latex): * lisp/ob-lilypond.el (org-babel-expand-body:lilypond): * lisp/ob-lisp.el (org-babel-expand-body:lisp): * lisp/ob-maxima.el (org-babel-maxima-expand): * lisp/ob-ocaml.el (org-babel-variable-assignments:ocaml): * lisp/ob-octave.el (org-babel-variable-assignments:octave): * lisp/ob-org.el (org-babel-expand-body:org): * lisp/ob-perl.el (org-babel-variable-assignments:perl): * lisp/ob-picolisp.el (org-babel-expand-body:picolisp): * lisp/ob-processing.el (org-babel-variable-assignments:processing): * lisp/ob-python.el (org-babel-variable-assignments:python): * lisp/ob-ruby.el (org-babel-variable-assignments:ruby): * lisp/ob-scheme.el (org-babel-expand-body:scheme): * lisp/ob-shell.el (org-babel-variable-assignments:shell): * lisp/ob-shen.el (org-babel-expand-body:shen): * lisp/ob-sql.el (org-babel-expand-body:sql): * lisp/ob-sqlite.el (org-babel-expand-body:sqlite): Adapt to change. * etc/ORG-NEWS: Document change.
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body (org-babel--get-vars params)))
(defun org-babel-sql-dbstring-mysql (host port user password database)
"Make MySQL cmd line args for database connection. Pass nil to omit that arg."
(combine-and-quote-strings
(delq nil
(list (when host (concat "-h" host))
(when port (format "-P%d" port))
(when user (concat "-u" user))
(when password (concat "-p" password))
(when database (concat "-D" database))))))
(defun org-babel-sql-dbstring-postgresql (host port user database)
"Make PostgreSQL command line args for database connection.
Pass nil to omit that arg."
(combine-and-quote-strings
(delq nil
(list (when host (concat "-h" host))
(when port (format "-p%d" port))
(when user (concat "-U" user))
(when database (concat "-d" database))))))
(defun org-babel-sql-dbstring-oracle (host port user password database)
"Make Oracle command line args for database connection."
(format "%s/%s@%s:%s/%s" user password host port database))
(defun org-babel-sql-dbstring-mssql (host user password database)
"Make sqlcmd commmand line args for database connection.
`sqlcmd' is the preferred command line tool to access Microsoft
SQL Server on Windows and Linux platform."
(mapconcat #'identity
(delq nil
(list (when host (format "-S \"%s\"" host))
(when user (format "-U \"%s\"" user))
(when password (format "-P \"%s\"" password))
(when database (format "-d \"%s\"" database))))
" "))
(defun org-babel-sql-convert-standard-filename (file)
"Convert the file name to OS standard.
If in Cygwin environment, uses Cygwin specific function to
convert the file name. Otherwise, uses Emacs' standard conversion
function."
(format "\"%s\""
(if (fboundp 'cygwin-convert-file-name-to-windows)
(cygwin-convert-file-name-to-windows file)
(convert-standard-filename file))))
(defun org-babel-execute:sql (body params)
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"Execute a block of Sql code with Babel.
This function is called by `org-babel-execute-src-block'."
Use assq instead of assoc for :keywords * lisp/ob-C.el (org-babel-C-execute): * lisp/ob-J.el (org-babel-execute:J): * lisp/ob-R.el (org-babel-edit-prep:R): (org-babel-expand-body:R): (org-babel-execute:R): (org-babel-variable-assignments:R): (org-babel-R-initiate-session): * lisp/ob-abc.el (org-babel-execute:abc): * lisp/ob-asymptote.el (org-babel-execute:asymptote): * lisp/ob-awk.el (org-babel-execute:awk): * lisp/ob-clojure.el (org-babel-expand-body:clojure): (org-babel-execute:clojure): * lisp/ob-core.el (org-babel-expand-body:generic): (org-babel-load-in-session): (org-babel-initiate-session): (org-babel-open-src-block-result): (org-babel-process-params): (org-babel-insert-result): (org-babel-expand-noweb-references): * lisp/ob-ditaa.el (org-babel-execute:ditaa): * lisp/ob-dot.el (org-babel-execute:dot): * lisp/ob-ebnf.el (org-babel-execute:ebnf): * lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp): (org-babel-execute:emacs-lisp): * lisp/ob-exp.el (org-babel-exp-process-buffer): (org-babel-exp-do-export): (org-babel-exp-code): * lisp/ob-forth.el (org-babel-execute:forth): * lisp/ob-fortran.el (org-babel-execute:fortran): * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): (org-babel-expand-body:gnuplot): (org-babel-execute:gnuplot): * lisp/ob-groovy.el (org-babel-execute:groovy): * lisp/ob-haskell.el (org-babel-execute:haskell): * lisp/ob-io.el (org-babel-execute:io): * lisp/ob-java.el (org-babel-execute:java): * lisp/ob-js.el (org-babel-execute:js): * lisp/ob-latex.el (org-babel-execute:latex): * lisp/ob-ledger.el (org-babel-execute:ledger): * lisp/ob-lilypond.el (org-babel-lilypond-process-basic): * lisp/ob-lisp.el (org-babel-expand-body:lisp): (org-babel-execute:lisp): * lisp/ob-lua.el (org-babel-execute:lua): * lisp/ob-maxima.el (org-babel-execute:maxima): * lisp/ob-mscgen.el (org-babel-execute:mscgen): * lisp/ob-ocaml.el (org-babel-execute:ocaml): * lisp/ob-octave.el (org-babel-execute:octave): * lisp/ob-org.el (org-babel-execute:org): * lisp/ob-perl.el (org-babel-execute:perl): * lisp/ob-picolisp.el (org-babel-execute:picolisp): * lisp/ob-plantuml.el (org-babel-execute:plantuml): * lisp/ob-python.el (org-babel-execute:python): * lisp/ob-ruby.el (org-babel-execute:ruby): * lisp/ob-sass.el (org-babel-execute:sass): * lisp/ob-scala.el (org-babel-execute:scala): * lisp/ob-scheme.el (org-babel-execute:scheme): * lisp/ob-screen.el (org-babel-execute:screen): (org-babel-prep-session:screen): * lisp/ob-shell.el (org-babel-execute:shell): (org-babel-variable-assignments:shell): (org-babel-sh-evaluate): * lisp/ob-shen.el (org-babel-execute:shen): * lisp/ob-sql.el (org-babel-execute:sql): * lisp/ob-sqlite.el (org-babel-execute:sqlite): * lisp/ob-tangle.el (org-babel-tangle): (org-babel-tangle-single-block): * lisp/org-src.el (org-src-associate-babel-session): * lisp/org.el (org-next-link): Use `assq' instead of `assoc' with :keyword keys.
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(let* ((result-params (cdr (assq :result-params params)))
(cmdline (cdr (assq :cmdline params)))
(dbhost (cdr (assq :dbhost params)))
(dbport (cdr (assq :dbport params)))
Use assq instead of assoc for :keywords * lisp/ob-C.el (org-babel-C-execute): * lisp/ob-J.el (org-babel-execute:J): * lisp/ob-R.el (org-babel-edit-prep:R): (org-babel-expand-body:R): (org-babel-execute:R): (org-babel-variable-assignments:R): (org-babel-R-initiate-session): * lisp/ob-abc.el (org-babel-execute:abc): * lisp/ob-asymptote.el (org-babel-execute:asymptote): * lisp/ob-awk.el (org-babel-execute:awk): * lisp/ob-clojure.el (org-babel-expand-body:clojure): (org-babel-execute:clojure): * lisp/ob-core.el (org-babel-expand-body:generic): (org-babel-load-in-session): (org-babel-initiate-session): (org-babel-open-src-block-result): (org-babel-process-params): (org-babel-insert-result): (org-babel-expand-noweb-references): * lisp/ob-ditaa.el (org-babel-execute:ditaa): * lisp/ob-dot.el (org-babel-execute:dot): * lisp/ob-ebnf.el (org-babel-execute:ebnf): * lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp): (org-babel-execute:emacs-lisp): * lisp/ob-exp.el (org-babel-exp-process-buffer): (org-babel-exp-do-export): (org-babel-exp-code): * lisp/ob-forth.el (org-babel-execute:forth): * lisp/ob-fortran.el (org-babel-execute:fortran): * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): (org-babel-expand-body:gnuplot): (org-babel-execute:gnuplot): * lisp/ob-groovy.el (org-babel-execute:groovy): * lisp/ob-haskell.el (org-babel-execute:haskell): * lisp/ob-io.el (org-babel-execute:io): * lisp/ob-java.el (org-babel-execute:java): * lisp/ob-js.el (org-babel-execute:js): * lisp/ob-latex.el (org-babel-execute:latex): * lisp/ob-ledger.el (org-babel-execute:ledger): * lisp/ob-lilypond.el (org-babel-lilypond-process-basic): * lisp/ob-lisp.el (org-babel-expand-body:lisp): (org-babel-execute:lisp): * lisp/ob-lua.el (org-babel-execute:lua): * lisp/ob-maxima.el (org-babel-execute:maxima): * lisp/ob-mscgen.el (org-babel-execute:mscgen): * lisp/ob-ocaml.el (org-babel-execute:ocaml): * lisp/ob-octave.el (org-babel-execute:octave): * lisp/ob-org.el (org-babel-execute:org): * lisp/ob-perl.el (org-babel-execute:perl): * lisp/ob-picolisp.el (org-babel-execute:picolisp): * lisp/ob-plantuml.el (org-babel-execute:plantuml): * lisp/ob-python.el (org-babel-execute:python): * lisp/ob-ruby.el (org-babel-execute:ruby): * lisp/ob-sass.el (org-babel-execute:sass): * lisp/ob-scala.el (org-babel-execute:scala): * lisp/ob-scheme.el (org-babel-execute:scheme): * lisp/ob-screen.el (org-babel-execute:screen): (org-babel-prep-session:screen): * lisp/ob-shell.el (org-babel-execute:shell): (org-babel-variable-assignments:shell): (org-babel-sh-evaluate): * lisp/ob-shen.el (org-babel-execute:shen): * lisp/ob-sql.el (org-babel-execute:sql): * lisp/ob-sqlite.el (org-babel-execute:sqlite): * lisp/ob-tangle.el (org-babel-tangle): (org-babel-tangle-single-block): * lisp/org-src.el (org-src-associate-babel-session): * lisp/org.el (org-next-link): Use `assq' instead of `assoc' with :keyword keys.
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(dbuser (cdr (assq :dbuser params)))
(dbpassword (cdr (assq :dbpassword params)))
(database (cdr (assq :database params)))
(engine (cdr (assq :engine params)))
(colnames-p (not (equal "no" (cdr (assq :colnames params)))))
Babel now cleans up any temporary files created using org-babel-temp-file * lisp/ob.el (org-babel-temporary-directory): variable to hold the value of the Babel temporary directory (org-babel-temp-file): replacement for make-temp-file with cleanup on exit of Emacs (org-babel-remove-temporary-directory): cleanup function run on exit of Emacs (kill-emacs-hook): now includes babel cleanup function * lisp/ob-C.el (org-babel-C-execute): using org-babel-temp-file instead of make-temp-file * lisp/ob-R.el (org-babel-R-assign-elisp): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-R-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-R-evaluate-session): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-asymptote.el (org-babel-execute:asymptote): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-clojure.el (org-babel-clojure-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ditaa.el (org-babel-execute:ditaa): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-dot.el (org-babel-execute:dot): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-execute:gnuplot): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-haskell.el (org-babel-load-session:haskell): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-haskell-export-to-lhs): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-latex.el (org-babel-execute:latex): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ledger.el (org-babel-execute:ledger): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-lisp.el (org-babel-execute:lisp): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-octave.el (org-babel-octave-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-octave-evaluate-session): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-octave-import-elisp-from-file): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-perl.el (org-babel-perl-evaluate): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-python.el (org-babel-python-evaluate): using `org-babel-temp-file' instead of `make-temp-file' using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ruby.el (org-babel-ruby-evaluate): using `org-babel-temp-file' instead of `make-temp-file' using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sass.el (org-babel-execute:sass): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sh.el (org-babel-sh-evaluate): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sql.el (org-babel-execute:sql): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sqlite.el (org-babel-execute:sqlite): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-sqlite-expand-vars): using `org-babel-temp-file' instead of `make-temp-file'
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(in-file (org-babel-temp-file "sql-in-"))
Use assq instead of assoc for :keywords * lisp/ob-C.el (org-babel-C-execute): * lisp/ob-J.el (org-babel-execute:J): * lisp/ob-R.el (org-babel-edit-prep:R): (org-babel-expand-body:R): (org-babel-execute:R): (org-babel-variable-assignments:R): (org-babel-R-initiate-session): * lisp/ob-abc.el (org-babel-execute:abc): * lisp/ob-asymptote.el (org-babel-execute:asymptote): * lisp/ob-awk.el (org-babel-execute:awk): * lisp/ob-clojure.el (org-babel-expand-body:clojure): (org-babel-execute:clojure): * lisp/ob-core.el (org-babel-expand-body:generic): (org-babel-load-in-session): (org-babel-initiate-session): (org-babel-open-src-block-result): (org-babel-process-params): (org-babel-insert-result): (org-babel-expand-noweb-references): * lisp/ob-ditaa.el (org-babel-execute:ditaa): * lisp/ob-dot.el (org-babel-execute:dot): * lisp/ob-ebnf.el (org-babel-execute:ebnf): * lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp): (org-babel-execute:emacs-lisp): * lisp/ob-exp.el (org-babel-exp-process-buffer): (org-babel-exp-do-export): (org-babel-exp-code): * lisp/ob-forth.el (org-babel-execute:forth): * lisp/ob-fortran.el (org-babel-execute:fortran): * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): (org-babel-expand-body:gnuplot): (org-babel-execute:gnuplot): * lisp/ob-groovy.el (org-babel-execute:groovy): * lisp/ob-haskell.el (org-babel-execute:haskell): * lisp/ob-io.el (org-babel-execute:io): * lisp/ob-java.el (org-babel-execute:java): * lisp/ob-js.el (org-babel-execute:js): * lisp/ob-latex.el (org-babel-execute:latex): * lisp/ob-ledger.el (org-babel-execute:ledger): * lisp/ob-lilypond.el (org-babel-lilypond-process-basic): * lisp/ob-lisp.el (org-babel-expand-body:lisp): (org-babel-execute:lisp): * lisp/ob-lua.el (org-babel-execute:lua): * lisp/ob-maxima.el (org-babel-execute:maxima): * lisp/ob-mscgen.el (org-babel-execute:mscgen): * lisp/ob-ocaml.el (org-babel-execute:ocaml): * lisp/ob-octave.el (org-babel-execute:octave): * lisp/ob-org.el (org-babel-execute:org): * lisp/ob-perl.el (org-babel-execute:perl): * lisp/ob-picolisp.el (org-babel-execute:picolisp): * lisp/ob-plantuml.el (org-babel-execute:plantuml): * lisp/ob-python.el (org-babel-execute:python): * lisp/ob-ruby.el (org-babel-execute:ruby): * lisp/ob-sass.el (org-babel-execute:sass): * lisp/ob-scala.el (org-babel-execute:scala): * lisp/ob-scheme.el (org-babel-execute:scheme): * lisp/ob-screen.el (org-babel-execute:screen): (org-babel-prep-session:screen): * lisp/ob-shell.el (org-babel-execute:shell): (org-babel-variable-assignments:shell): (org-babel-sh-evaluate): * lisp/ob-shen.el (org-babel-execute:shen): * lisp/ob-sql.el (org-babel-execute:sql): * lisp/ob-sqlite.el (org-babel-execute:sqlite): * lisp/ob-tangle.el (org-babel-tangle): (org-babel-tangle-single-block): * lisp/org-src.el (org-src-associate-babel-session): * lisp/org.el (org-next-link): Use `assq' instead of `assoc' with :keyword keys.
2016-09-22 13:45:15 -04:00
(out-file (or (cdr (assq :out-file params))
Babel now cleans up any temporary files created using org-babel-temp-file * lisp/ob.el (org-babel-temporary-directory): variable to hold the value of the Babel temporary directory (org-babel-temp-file): replacement for make-temp-file with cleanup on exit of Emacs (org-babel-remove-temporary-directory): cleanup function run on exit of Emacs (kill-emacs-hook): now includes babel cleanup function * lisp/ob-C.el (org-babel-C-execute): using org-babel-temp-file instead of make-temp-file * lisp/ob-R.el (org-babel-R-assign-elisp): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-R-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-R-evaluate-session): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-asymptote.el (org-babel-execute:asymptote): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-clojure.el (org-babel-clojure-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ditaa.el (org-babel-execute:ditaa): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-dot.el (org-babel-execute:dot): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-execute:gnuplot): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-haskell.el (org-babel-load-session:haskell): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-haskell-export-to-lhs): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-latex.el (org-babel-execute:latex): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ledger.el (org-babel-execute:ledger): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-lisp.el (org-babel-execute:lisp): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-octave.el (org-babel-octave-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-octave-evaluate-session): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-octave-import-elisp-from-file): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-perl.el (org-babel-perl-evaluate): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-python.el (org-babel-python-evaluate): using `org-babel-temp-file' instead of `make-temp-file' using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ruby.el (org-babel-ruby-evaluate): using `org-babel-temp-file' instead of `make-temp-file' using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sass.el (org-babel-execute:sass): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sh.el (org-babel-sh-evaluate): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sql.el (org-babel-execute:sql): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sqlite.el (org-babel-execute:sqlite): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-sqlite-expand-vars): using `org-babel-temp-file' instead of `make-temp-file'
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(org-babel-temp-file "sql-out-")))
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(header-delim "")
(command (pcase (intern engine)
(`dbi (format "dbish --batch %s < %s | sed '%s' > %s"
(or cmdline "")
(org-babel-process-file-name in-file)
"/^+/d;s/^|//;s/(NULL)/ /g;$d"
(org-babel-process-file-name out-file)))
(`monetdb (format "mclient -f tab %s < %s > %s"
(or cmdline "")
(org-babel-process-file-name in-file)
(org-babel-process-file-name out-file)))
(`mssql (format "sqlcmd %s -s \"\t\" %s -i %s -o %s"
(or cmdline "")
(org-babel-sql-dbstring-mssql
dbhost dbuser dbpassword database)
(org-babel-sql-convert-standard-filename
(org-babel-process-file-name in-file))
(org-babel-sql-convert-standard-filename
(org-babel-process-file-name out-file))))
(`mysql (format "mysql %s %s %s < %s > %s"
(org-babel-sql-dbstring-mysql
dbhost dbport dbuser dbpassword database)
(if colnames-p "" "-N")
(or cmdline "")
babel: New function to process file names for use in external processes * ob.el (org-babel-process-file-name): New function (org-babel-maybe-remote-file): Delete function * ob-sql.el (org-babel-execute:sql): Use org-babel-process-file-name * ob-scheme.el (org-babel-execute:scheme): Use org-babel-process-file-name * ob-sass.el (org-babel-execute:sass): Use org-babel-process-file-name * ob-ruby.el (org-babel-ruby-evaluate): Use org-babel-process-file-name * ob-python.el (org-babel-python-evaluate-external-process): Use org-babel-process-file-name (org-babel-python-evaluate-session): Use org-babel-process-file-name * ob-plantuml.el (org-babel-execute:plantuml): Use org-babel-process-file-name * ob-perl.el (org-babel-perl-evaluate): Use org-babel-process-file-name * ob-octave.el (org-babel-octave-evaluate-external-process): Use org-babel-process-file-name (org-babel-octave-evaluate-session): Use org-babel-process-file-name, don't use org-babel-maybe-remote-file * ob-lisp.el (org-babel-execute:lisp): Use org-babel-process-file-name * ob-ledger.el (org-babel-execute:ledger): Use org-babel-process-file-name * ob-js.el (org-babel-execute:js): Use org-babel-process-file-name * ob-haskell.el (org-babel-haskell-export-to-lhs): Use org-babel-process-file-name * ob-gnuplot.el (org-babel-execute:gnuplot): Use org-babel-process-file-name * ob-eval.el (org-babel-eval-read-file): Don't use org-babel-maybe-remote-file * ob-dot.el (org-babel-execute:dot): Use org-babel-process-file-name * ob-ditaa.el (org-babel-execute:ditaa): Use org-babel-process-file-name * ob-clojure.el (org-babel-clojure-evaluate-external-process): Use org-babel-process-file-name * ob-asymptote.el (org-babel-execute:asymptote): Use org-babel-process-file-name * ob-R.el (org-babel-R-assign-elisp): Don't use org-babel-maybe-remote-file, use org-babel-process-file-name (org-babel-R-evaluate-external-process): Use org-babel-process-file-name (org-babel-R-evaluate-session): Use org-babel-process-file-name * ob-C.el (org-babel-C-execute): Use org-babel-process-file-name In addition to passing the file path through `expand-file-name', tramp-style remote file names are converted to conventional (local) file paths. The reason is that, if a tramp file name was in use in emacs, then the shell command will be executing on the remote machine in question. Further, by default the file name is passed through `shell-quote-argument'.
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(org-babel-process-file-name in-file)
(org-babel-process-file-name out-file)))
(`postgresql (format
"%spsql --set=\"ON_ERROR_STOP=1\" %s -A -P \
footer=off -F \"\t\" %s -f %s -o %s %s"
(if dbpassword
(format "PGPASSWORD=%s " dbpassword)
"")
(if colnames-p "" "-t")
(org-babel-sql-dbstring-postgresql
dbhost dbport dbuser database)
(org-babel-process-file-name in-file)
(org-babel-process-file-name out-file)
(or cmdline "")))
(`oracle (format
"sqlplus -s %s < %s > %s"
(org-babel-sql-dbstring-oracle
dbhost dbport dbuser dbpassword database)
(org-babel-process-file-name in-file)
(org-babel-process-file-name out-file)))
(_ (error "No support for the %s SQL engine" engine)))))
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(with-temp-file in-file
(insert
(pcase (intern engine)
(`dbi "/format partbox\n")
(`oracle "SET PAGESIZE 50000
SET NEWPAGE 0
SET TAB OFF
SET SPACE 0
SET LINESIZE 9999
SET ECHO OFF
SET FEEDBACK OFF
SET VERIFY OFF
SET HEADING ON
SET MARKUP HTML OFF SPOOL OFF
SET COLSEP '|'
")
(`mssql "SET NOCOUNT ON
")
(_ ""))
(org-babel-expand-body:sql body params)))
(org-babel-eval command "")
org-babel-result-cond - unified handling of results * lisp/ob.el (org-babel-result-cond): This function should now be used by all language backends to handle the processing of raw code block output into scalar results, table results, or ignored results depending on the value of result-params. * lisp/ob-C.el (org-babel-C-execute): Use org-babel-result-cond. * lisp/ob-R.el (org-babel-R-evaluate-external-process): Use org-babel-result-cond. (org-babel-R-evaluate-session): Use org-babel-result-cond. * lisp/ob-awk.el (org-babel-execute:awk): Use org-babel-result-cond. * lisp/ob-clojure.el (org-babel-execute:clojure): Use org-babel-result-cond. * lisp/ob-emacs-lisp.el (org-babel-execute:emacs-lisp): Use org-babel-result-cond. * lisp/ob-fortran.el (org-babel-execute:fortran): Use org-babel-result-cond. * lisp/ob-io.el (org-babel-io-evaluate): Use org-babel-result-cond. * lisp/ob-java.el (org-babel-execute:java): Use org-babel-result-cond. * lisp/ob-lisp.el (org-babel-execute:lisp): Use org-babel-result-cond. * lisp/ob-maxima.el (org-babel-execute:maxima): Use org-babel-result-cond. * lisp/ob-picolisp.el (org-babel-execute:picolisp): Use org-babel-result-cond. * lisp/ob-python.el (org-babel-python-evaluate-external-process): Use org-babel-result-cond. (org-babel-python-evaluate-session): Use org-babel-result-cond. * lisp/ob-scala.el (org-babel-scala-evaluate): Use org-babel-result-cond. * lisp/ob-sh.el (org-babel-sh-evaluate): Use org-babel-result-cond. * lisp/ob-shen.el (org-babel-execute:shen): Use org-babel-result-cond. * lisp/ob-sql.el (org-babel-execute:sql): Use org-babel-result-cond. * lisp/ob-sqlite.el (org-babel-execute:sqlite): Use org-babel-result-cond.
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(org-babel-result-cond result-params
(with-temp-buffer
(progn (insert-file-contents-literally out-file) (buffer-string)))
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(with-temp-buffer
(cond
((memq (intern engine) '(dbi mysql postgresql))
;; Add header row delimiter after column-names header in first line
(cond
(colnames-p
(with-temp-buffer
(insert-file-contents out-file)
(goto-char (point-min))
(forward-line 1)
(insert "-\n")
(setq header-delim "-")
(write-file out-file)))))
(t
;; Need to figure out the delimiter for the header row
(with-temp-buffer
(insert-file-contents out-file)
(goto-char (point-min))
(when (re-search-forward "^\\(-+\\)[^-]" nil t)
(setq header-delim (match-string-no-properties 1)))
(goto-char (point-max))
(forward-char -1)
(while (looking-at "\n")
(delete-char 1)
(goto-char (point-max))
(forward-char -1))
(write-file out-file))))
(org-table-import out-file '(16))
(org-babel-reassemble-table
(mapcar (lambda (x)
(if (string= (car x) header-delim)
'hline
x))
(org-table-to-lisp))
Use assq instead of assoc for :keywords * lisp/ob-C.el (org-babel-C-execute): * lisp/ob-J.el (org-babel-execute:J): * lisp/ob-R.el (org-babel-edit-prep:R): (org-babel-expand-body:R): (org-babel-execute:R): (org-babel-variable-assignments:R): (org-babel-R-initiate-session): * lisp/ob-abc.el (org-babel-execute:abc): * lisp/ob-asymptote.el (org-babel-execute:asymptote): * lisp/ob-awk.el (org-babel-execute:awk): * lisp/ob-clojure.el (org-babel-expand-body:clojure): (org-babel-execute:clojure): * lisp/ob-core.el (org-babel-expand-body:generic): (org-babel-load-in-session): (org-babel-initiate-session): (org-babel-open-src-block-result): (org-babel-process-params): (org-babel-insert-result): (org-babel-expand-noweb-references): * lisp/ob-ditaa.el (org-babel-execute:ditaa): * lisp/ob-dot.el (org-babel-execute:dot): * lisp/ob-ebnf.el (org-babel-execute:ebnf): * lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp): (org-babel-execute:emacs-lisp): * lisp/ob-exp.el (org-babel-exp-process-buffer): (org-babel-exp-do-export): (org-babel-exp-code): * lisp/ob-forth.el (org-babel-execute:forth): * lisp/ob-fortran.el (org-babel-execute:fortran): * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): (org-babel-expand-body:gnuplot): (org-babel-execute:gnuplot): * lisp/ob-groovy.el (org-babel-execute:groovy): * lisp/ob-haskell.el (org-babel-execute:haskell): * lisp/ob-io.el (org-babel-execute:io): * lisp/ob-java.el (org-babel-execute:java): * lisp/ob-js.el (org-babel-execute:js): * lisp/ob-latex.el (org-babel-execute:latex): * lisp/ob-ledger.el (org-babel-execute:ledger): * lisp/ob-lilypond.el (org-babel-lilypond-process-basic): * lisp/ob-lisp.el (org-babel-expand-body:lisp): (org-babel-execute:lisp): * lisp/ob-lua.el (org-babel-execute:lua): * lisp/ob-maxima.el (org-babel-execute:maxima): * lisp/ob-mscgen.el (org-babel-execute:mscgen): * lisp/ob-ocaml.el (org-babel-execute:ocaml): * lisp/ob-octave.el (org-babel-execute:octave): * lisp/ob-org.el (org-babel-execute:org): * lisp/ob-perl.el (org-babel-execute:perl): * lisp/ob-picolisp.el (org-babel-execute:picolisp): * lisp/ob-plantuml.el (org-babel-execute:plantuml): * lisp/ob-python.el (org-babel-execute:python): * lisp/ob-ruby.el (org-babel-execute:ruby): * lisp/ob-sass.el (org-babel-execute:sass): * lisp/ob-scala.el (org-babel-execute:scala): * lisp/ob-scheme.el (org-babel-execute:scheme): * lisp/ob-screen.el (org-babel-execute:screen): (org-babel-prep-session:screen): * lisp/ob-shell.el (org-babel-execute:shell): (org-babel-variable-assignments:shell): (org-babel-sh-evaluate): * lisp/ob-shen.el (org-babel-execute:shen): * lisp/ob-sql.el (org-babel-execute:sql): * lisp/ob-sqlite.el (org-babel-execute:sqlite): * lisp/ob-tangle.el (org-babel-tangle): (org-babel-tangle-single-block): * lisp/org-src.el (org-src-associate-babel-session): * lisp/org.el (org-next-link): Use `assq' instead of `assoc' with :keyword keys.
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(org-babel-pick-name (cdr (assq :colname-names params))
(cdr (assq :colnames params)))
(org-babel-pick-name (cdr (assq :rowname-names params))
(cdr (assq :rownames params))))))))
(defun org-babel-sql-expand-vars (body vars)
"Expand the variables held in VARS in BODY."
(mapc
(lambda (pair)
(setq body
(replace-regexp-in-string
(format "$%s" (car pair))
Backport changes from Emacs revs 115081 and 115082 2013-11-12 Stefan Monnier <monnier@iro.umontreal.ca> Address some byte-compiler warnings. * ob-abc.el (org-babel-expand-body:abc): Use dolist. (org-babel-execute:abc): Fix regexp quoting. * ob-calc.el (org--var-syms): Rename from `var-syms'. * ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding. * ob-table.el (sbe): Move debug declaration. * org-clock.el (org--msg-extra): Rename from `msg-extra'. * org.el (org-version): Avoid var name starting with _. (org-inhibit-startup, org-called-with-limited-levels) (org-link-search-inhibit-query, org-time-was-given) (org-end-time-was-given, org-def, org-defdecode, org-with-time): * org-colview.el (org-agenda-overriding-columns-format): * org-agenda.el (org-agenda-multi, org-depend-tag-blocked) (org-agenda-show-log-scoped): * ob-python.el (py-which-bufname, python-shell-buffer-name): * ob-haskell.el (org-export-copy-to-kill-ring): * ob-exp.el (org-link-search-inhibit-query): * ob-R.el (ess-eval-visibly-p): * ob-core.el (org-src-window-setup): Declare before use. (org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'. * ox-odt.el (org-odt-hfy-face-to-css): * org-src.el (org-src-associate-babel-session, org-src-get-lang-mode): * org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex) (org-bibtex-check): * ob-tangle.el (org-babel-tangle, org-babel-spec-to-string) (org-babel-tangle-single-block, org-babel-tangle-comment-links): * ob-table.el (sbe): * ob-sqlite.el (org-babel-sqlite-expand-vars): * ob-sql.el (org-babel-sql-expand-vars): * ob-shen.el (org-babel-execute:shen): * ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate): * ob-scala.el (org-babel-scala-evaluate): * ob-ruby.el (org-babel-ruby-table-or-string) (org-babel-ruby-evaluate): * ob-python.el (org-babel-python-table-or-string) (org-babel-python-evaluate-external-process) (org-babel-python-evaluate-session): * ob-picolisp.el (org-babel-execute:picolisp): * ob-perl.el (org-babel-perl-evaluate): * ob-maxima.el (org-babel-execute:maxima): * ob-lisp.el (org-babel-execute:lisp): * ob-java.el (org-babel-execute:java): * ob-io.el (org-babel-io-evaluate): * ob-haskell.el (org-babel-execute:haskell): * ob-fortran.el (org-babel-execute:fortran): * ob-exp.el (org-babel-exp-code): * ob-emacs-lisp.el (org-babel-execute:emacs-lisp): * ob-ditaa.el (org-babel-execute:ditaa): * ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash) (org-babel-parse-header-arguments, org-babel-reassemble-table) (org-babel-goto-src-block-head, org-babel-mark-block) (org-babel-expand-noweb-references, org-babel-script-escape) (org-babel-process-file-name): * ob-clojure.el (org-babel-execute:clojure): * ob-calc.el (org-babel-execute:calc): * ob-awk.el (org-babel-execute:awk): * ob-abc.el (org-babel-execute:abc): * ob-R.el (org-babel-expand-body:R): * ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...). 2013-11-12 Glenn Morris <rgm@gnu.org> * ox-html.el (org-html-scripts): Add 2013 to copyright years. (org-html-infojs-template): Copyright holder to FSF.
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(let ((val (cdr pair)))
(if (listp val)
(let ((data-file (org-babel-temp-file "sql-data-")))
(with-temp-file data-file
(insert (orgtbl-to-csv
val '(:fmt (lambda (el) (if (stringp el)
el
(format "%S" el)))))))
data-file)
(if (stringp val) val (format "%S" val))))
body)))
vars)
body)
(defun org-babel-prep-session:sql (_session _params)
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"Raise an error because Sql sessions aren't implemented."
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(error "SQL sessions not yet implemented"))
(provide 'ob-sql)
;;; ob-sql.el ends here