org-mode/lisp/ob-sqlite.el

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;;; ob-sqlite.el --- org-babel functions for sqlite database interaction
;; Copyright (C) 2010-2011 Free Software Foundation
;; Author: Eric Schulte
;; Keywords: literate programming, reproducible research
;; Homepage: http://orgmode.org
;; Version: 7.7
;; This file is part of GNU Emacs.
;; GNU Emacs is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.
;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;; GNU General Public License for more details.
;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
;;; Commentary:
;; Org-Babel support for evaluating sqlite source code.
;;; Code:
(require 'ob)
(require 'ob-eval)
(require 'ob-ref)
(declare-function org-fill-template "org" (template alist))
(declare-function org-table-convert-region "org-table"
(beg0 end0 &optional separator))
(declare-function orgtbl-to-csv "org-table" (TABLE PARAMS))
(defvar org-babel-default-header-args:sqlite '())
(defvar org-babel-header-arg-names:sqlite
'(db header echo bail csv column html line list separator nullvalue)
"Sqlite specific header args.")
removing obsoleted optional third argument from org-babel-expand-body:LANG * lisp/ob-C.el (org-babel-expand-body:c++): removing obsoleted optional third argument (org-babel-expand-body:c++): removing obsoleted optional third argument (org-babel-C-expand): removing obsoleted optional third argument * lisp/ob-R.el: (org-babel-expand-body:R): removing obsoleted optional third argument (org-babel-execute:R): removing obsoleted optional third argument (org-babel-R-variable-assignments): removing obsoleted optional third argument * lisp/ob-asymptote.el: (org-babel-expand-body:asymptote): removing obsoleted optional third argument (org-babel-execute:asymptote): removing obsoleted optional third argument * lisp/ob-clojure.el: (org-babel-expand-body:clojure): removing obsoleted optional third argument (org-babel-execute:clojure): removing obsoleted optional third argument * lisp/ob-css.el: (org-babel-expand-body:css): removing obsoleted optional third argument * lisp/ob-ditaa.el: (org-babel-expand-body:ditaa): removing obsoleted optional third argument * lisp/ob-dot.el: (org-babel-expand-body:dot): removing obsoleted optional third argument (org-babel-execute:dot): removing obsoleted optional third argument * lisp/ob-emacs-lisp.el: (org-babel-expand-body:emacs-lisp): removing obsoleted optional third argument (org-babel-execute:emacs-lisp): removing obsoleted optional third argument * lisp/ob-gnuplot.el: (org-babel-expand-body:gnuplot): removing obsoleted optional third argument * lisp/ob-haskell.el: (org-babel-expand-body:haskell): removing obsoleted optional third argument (org-babel-execute:haskell): removing obsoleted optional third argument (org-babel-load-session:haskell): removing obsoleted optional third (org-babel-prep-session:haskell): removing obsoleted optional third * lisp/ob-js.el: (org-babel-expand-body:js): removing obsoleted optional third argument (org-babel-execute:js): removing obsoleted optional third argument * lisp/ob-latex.el: (org-babel-expand-body:latex): removing obsoleted optional third argument * lisp/ob-lisp.el: (org-babel-expand-body:lisp): removing obsoleted optional third argument (org-babel-execute:lisp): removing obsoleted optional third argument * lisp/ob-mscgen.el: (org-babel-expand-body:mscgen): removing obsoleted optional third argument * lisp/ob-ocaml.el: (org-babel-expand-body:ocaml): removing obsoleted optional third argument (org-babel-execute:ocaml): removing obsoleted optional third argument * lisp/ob-octave.el: (org-babel-expand-body:matlab): removing obsoleted optional third argument (org-babel-expand-body:octave): removing obsoleted optional third argument (org-babel-execute:octave): removing obsoleted optional third argument (org-babel-octave-variable-assignments): removing obsoleted optional third * lisp/ob-org.el: (org-babel-expand-body:org): removing obsoleted optional third argument * lisp/ob-perl.el: (org-babel-expand-body:perl): removing obsoleted optional third argument (org-babel-execute:perl): removing obsoleted optional third argument * lisp/ob-plantuml.el: (org-babel-expand-body:plantuml): removing obsoleted optional third argument * lisp/ob-python.el: (org-babel-expand-body:python): removing obsoleted optional third argument (org-babel-execute:python): removing obsoleted optional third argument (org-babel-python-variable-assignments): removing obsoleted optional third * lisp/ob-ruby.el: (org-babel-expand-body:ruby): removing obsoleted optional third argument (org-babel-execute:ruby): removing obsoleted optional third argument * lisp/ob-sass.el: (org-babel-expand-body:sass): removing obsoleted optional third argument * lisp/ob-scheme.el: (org-babel-expand-body:scheme): removing obsoleted optional third argument (org-babel-execute:scheme): removing obsoleted optional third argument * lisp/ob-screen.el: (org-babel-expand-body:screen): removing obsoleted optional third argument * lisp/ob-sh.el: (org-babel-expand-body:sh): removing obsoleted optional third argument (org-babel-execute:sh): removing obsoleted optional third argument (org-babel-sh-variable-assignments): removing obsoleted optional third * lisp/ob-sql.el: (org-babel-expand-body:sql): removing obsoleted optional third argument * lisp/ob-sqlite.el: (org-babel-expand-body:sqlite): removing obsoleted optional third argument (org-babel-execute:sqlite): removing obsoleted optional third argument * lisp/ob.el: (org-babel-expand-body:generic): removing obsoleted optional third argument
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(defun org-babel-expand-body:sqlite (body params)
"Expand BODY according to the values of PARAMS."
(org-babel-sqlite-expand-vars
body (mapcar #'cdr (org-babel-get-header params :var))))
(defvar org-babel-sqlite3-command "sqlite3")
(defun org-babel-execute:sqlite (body params)
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"Execute a block of Sqlite code with Babel.
This function is called by `org-babel-execute-src-block'."
(let ((result-params (split-string (or (cdr (assoc :results params)) "")))
(db (cdr (assoc :db params)))
(separator (cdr (assoc :separator params)))
(nullvalue (cdr (assoc :nullvalue params)))
(headers-p (equal "yes" (cdr (assoc :colnames params))))
(others (delq nil (mapcar
(lambda (arg) (car (assoc arg params)))
(list :header :echo :bail :column
:csv :html :line :list))))
exit-code)
(unless db (error "ob-sqlite: can't evaluate without a database."))
(with-temp-buffer
(insert
(org-babel-eval
(org-fill-template
"%cmd %header %separator %nullvalue %others %csv %db "
(list
(cons "cmd" org-babel-sqlite3-command)
(cons "header" (if headers-p "-header" "-noheader"))
(cons "separator"
(if separator (format "-separator %s" separator) ""))
(cons "nullvalue"
(if nullvalue (format "-nullvalue %s" nullvalue) ""))
(cons "others"
(mapconcat
(lambda (arg) (format "-%s" (substring (symbol-name arg) 1)))
others " "))
;; for easy table parsing, default header type should be -csv
(cons "csv" (if (or (member :csv others) (member :column others)
(member :line others) (member :list others)
(member :html others) separator)
""
"-csv"))
(cons "db " db)))
;; body of the code block
(org-babel-expand-body:sqlite body params)))
(if (or (member "scalar" result-params)
(member "verbatim" result-params)
(member "html" result-params)
(member "code" result-params)
(equal (point-min) (point-max)))
(buffer-string)
(org-table-convert-region (point-min) (point-max))
(org-babel-sqlite-table-or-scalar
(org-babel-sqlite-offset-colnames
(org-table-to-lisp) headers-p))))))
(defun org-babel-sqlite-expand-vars (body vars)
"Expand the variables held in VARS in BODY."
(mapc
(lambda (pair)
(setq body
(replace-regexp-in-string
(format "\$%s" (car pair))
((lambda (val)
(if (listp val)
((lambda (data-file)
(with-temp-file data-file
(insert (orgtbl-to-csv
val '(:fmt (lambda (el) (if (stringp el)
el
(format "%S" el)))))))
data-file)
Babel now cleans up any temporary files created using org-babel-temp-file * lisp/ob.el (org-babel-temporary-directory): variable to hold the value of the Babel temporary directory (org-babel-temp-file): replacement for make-temp-file with cleanup on exit of Emacs (org-babel-remove-temporary-directory): cleanup function run on exit of Emacs (kill-emacs-hook): now includes babel cleanup function * lisp/ob-C.el (org-babel-C-execute): using org-babel-temp-file instead of make-temp-file * lisp/ob-R.el (org-babel-R-assign-elisp): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-R-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-R-evaluate-session): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-asymptote.el (org-babel-execute:asymptote): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-clojure.el (org-babel-clojure-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ditaa.el (org-babel-execute:ditaa): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-dot.el (org-babel-execute:dot): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-execute:gnuplot): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-haskell.el (org-babel-load-session:haskell): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-haskell-export-to-lhs): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-latex.el (org-babel-execute:latex): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ledger.el (org-babel-execute:ledger): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-lisp.el (org-babel-execute:lisp): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-octave.el (org-babel-octave-evaluate-external-process): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-octave-evaluate-session): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-octave-import-elisp-from-file): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-perl.el (org-babel-perl-evaluate): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-python.el (org-babel-python-evaluate): using `org-babel-temp-file' instead of `make-temp-file' using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-ruby.el (org-babel-ruby-evaluate): using `org-babel-temp-file' instead of `make-temp-file' using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sass.el (org-babel-execute:sass): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sh.el (org-babel-sh-evaluate): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sql.el (org-babel-execute:sql): using `org-babel-temp-file' instead of `make-temp-file' * lisp/ob-sqlite.el (org-babel-execute:sqlite): using `org-babel-temp-file' instead of `make-temp-file' (org-babel-sqlite-expand-vars): using `org-babel-temp-file' instead of `make-temp-file'
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(org-babel-temp-file "sqlite-data-"))
(if (stringp val) val (format "%S" val))))
(cdr pair))
body)))
vars)
body)
(defun org-babel-sqlite-table-or-scalar (result)
"If RESULT looks like a trivial table, then unwrap it."
(if (and (equal 1 (length result))
(equal 1 (length (car result))))
(org-babel-read (caar result))
(mapcar (lambda (row)
(if (equal 'hline row)
'hline
(mapcar #'org-babel-read row))) result)))
(defun org-babel-sqlite-offset-colnames (table headers-p)
"If HEADERS-P is non-nil then offset the first row as column names."
(if headers-p
(cons (car table) (cons 'hline (cdr table)))
table))
(defun org-babel-prep-session:sqlite (session params)
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"Raise an error because support for sqlite sessions isn't implemented.
Prepare SESSION according to the header arguments specified in PARAMS."
(error "sqlite sessions not yet implemented"))
(provide 'ob-sqlite)
;;; ob-sqlite.el ends here