org-mode/lisp/ob-table.el

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;;; ob-table.el --- support for calling org-babel functions from tables
;; Copyright (C) 2009-2012 Free Software Foundation, Inc.
;; Author: Eric Schulte
;; Keywords: literate programming, reproducible research
;; Homepage: http://orgmode.org
;; This file is part of GNU Emacs.
;; GNU Emacs is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.
;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;; GNU General Public License for more details.
;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs. If not, see <http://www.gnu.org/licenses/>.
;;; Commentary:
;; Should allow calling functions from org-mode tables using the
;; function `sbe' as so...
;; #+begin_src emacs-lisp :results silent
;; (defun fibbd (n) (if (< n 2) 1 (+ (fibbd (- n 1)) (fibbd (- n 2)))))
;; #+end_src
Standardized code block keywords Nick Dokos <nicholas.dokos@hp.com> writes: > Eric Schulte <schulte.eric@gmail.com> wrote: > >> The attached updated patch fixes a bug in the original. >> > > Minor problem in applying: > > ,---- > | $ git apply ~/Mail/inbox/724 > | /home/nick/Mail/inbox/724:671: trailing whitespace. > | #+name: > | /home/nick/Mail/inbox/724:599: new blank line at EOF. > | + > | warning: 2 lines add whitespace errors. > `---- The attached version fixes these issues, Thanks -- Eric >From 0e43d59ee8d46a63f86780a502de726271bc39de Mon Sep 17 00:00:00 2001 From: Eric Schulte <schulte.eric@gmail.com> Date: Fri, 28 Oct 2011 10:44:21 -0600 Subject: [PATCH] removing code block, results and call-line synonyms -- BREAKING CHANGE Following a round of on-list discussion many code block synonyms have been removed, moving forward the following syntax is valid. - call lines are specified with #+call: - code blocks are named with #+name: - results are named with #+name:, however results generated by a code block may still be labeled with #+results:, and tables named with #+tblname: will be considered to be named results The following function may be used to update an existing Org-mode buffer to the new syntax. (defun update-org-buffer () "Update an Org-mode buffer to the new data, code block and call line syntax." (interactive) (save-excursion (flet ((to-re (lst) (concat "^[ \t]*#\\+" (regexp-opt lst t) "\\(\\[\\([[:alnum:]]+\\)\\]\\)?\\:[ \t]*")) (update (re new) (goto-char (point-min)) (while (re-search-forward re nil t) (replace-match new nil nil nil 1)))) (let ((old-re (to-re '("RESULTS" "DATA" "SRCNAME" "SOURCE"))) (lob-re (to-re '("LOB"))) (case-fold-search t)) (update old-re "name") (update lob-re "call"))))) Note: If an old version of Org-mode (e.g., the one shipped with Emacs) is installed on your system many of the important variables will be pre-defined with a defvar and *will not* have their values automatically updated, these include the following. - org-babel-data-names - org-babel-result-regexp - org-babel-src-block-regexp - org-babel-src-name-regexp - org-babel-src-name-w-name-regexp It may be necessary to either remove the source code of older versions of Org-mode, or to explicitly evaluate the ob.el file. * lisp/ob-exp.el (org-exp-res/src-name-cleanup): Updated Documentation. * lisp/ob-lob.el (org-babel-block-lob-one-liner-regexp): Updated regular expression. (org-babel-inline-lob-one-liner-regexp): Updated regular expression. * lisp/ob-ref.el (org-babel-ref-resolve): Notice when something that looks like a data results may actually be a code block. * lisp/ob-table.el: Updated documentation. * lisp/ob.el (org-babel-src-name-regexp): Simplified regexp. (org-babel-get-src-block-info): Updated match strings. (org-babel-data-names): Simplified acceptable names. (org-babel-find-named-block): Indentation. (org-babel-find-named-result): Updated to not return a code block as a result. * lisp/org.el (org-fontify-meta-lines-and-blocks-1): Removing references to old syntactic elements. (org-additional-option-like-keywords): Removing references to old syntactic elements. * contrib/babel/library-of-babel.org: Updated to make use of the new syntax. * testing/examples/babel-dangerous.org: Updated to make use of the new syntax. * testing/examples/babel.org: Updated to make use of the new syntax. * testing/examples/ob-awk-test.org: Updated to make use of the new syntax. * testing/examples/ob-fortran-test.org: Updated to make use of the new syntax. * testing/lisp/test-ob.el: Removed two bad tests which tested the literal values of old regular expressions rather than their behavior.
2011-10-28 19:52:48 -04:00
;; #+name: fibbd
;; #+begin_src emacs-lisp :var n=2 :results silent
;; (fibbd n)
;; #+end_src
;; | original | fibbd |
;; |----------+--------|
;; | 0 | |
;; | 1 | |
;; | 2 | |
;; | 3 | |
;; | 4 | |
;; | 5 | |
;; | 6 | |
;; | 7 | |
;; | 8 | |
;; | 9 | |
;; #+TBLFM: $2='(sbe 'fibbd (n $1))
;;; Code:
(require 'ob)
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(defun org-babel-table-truncate-at-newline (string)
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"Replace newline character with ellipses.
If STRING ends in a newline character, then remove the newline
character and replace it with ellipses."
(if (and (stringp string) (string-match "[\n\r]\\(.\\)?" string))
(concat (substring string 0 (match-beginning 0))
(if (match-string 1 string) "...")) string))
(defmacro sbe (source-block &rest variables)
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"Return the results of calling SOURCE-BLOCK with VARIABLES.
Each element of VARIABLES should be a two
element list, whose first element is the name of the variable and
second element is a string of its value. The following call to
`sbe' would be equivalent to the following source code block.
(sbe 'source-block (n $2) (m 3))
#+begin_src emacs-lisp :var results=source-block(n=val_at_col_2, m=3) :results silent
results
#+end_src
NOTE: by default string variable names are interpreted as
references to source-code blocks, to force interpretation of a
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cell's value as a string, prefix the identifier a \"$\" (e.g.,
\"$$2\" instead of \"$2\" or \"$@2$2\" instead of \"@2$2\").
NOTE: it is also possible to pass header arguments to the code
block. In this case a table cell should hold the string value of
the header argument which can then be passed before all variables
as shown in the example below.
| 1 | 2 | :file nothing.png | nothing.png |
#+TBLFM: @1$4='(sbe test-sbe $3 (x $1) (y $2))"
(let* ((header-args (if (stringp (car variables)) (car variables) ""))
(variables (if (stringp (car variables)) (cdr variables) variables)))
(let* (quote
(variables
(mapcar
(lambda (var)
;; ensure that all cells prefixed with $'s are strings
(cons (car var)
(delq nil (mapcar
(lambda (el)
(if (eq '$ el)
(prog1 nil (setq quote t))
(prog1 (if quote
(format "\"%s\"" el)
(org-babel-clean-text-properties el))
(setq quote nil))))
(cdr var)))))
variables)))
(unless (stringp source-block)
(setq source-block (symbol-name source-block)))
((lambda (result)
(org-babel-trim (if (stringp result) result (format "%S" result))))
(if (and source-block (> (length source-block) 0))
(let ((params
(eval `(org-babel-parse-header-arguments
(concat
":var results="
,source-block
"[" ,header-args "]"
"("
(mapconcat
(lambda (var-spec)
(if (> (length (cdr var-spec)) 1)
(format "%S='%S"
(car var-spec)
(mapcar #'read (cdr var-spec)))
(format "%S=%s"
(car var-spec) (cadr var-spec))))
',variables ", ")
")")))))
(org-babel-execute-src-block
nil (list "emacs-lisp" "results" params)
'((:results . "silent"))))
"")))))
(def-edebug-spec sbe (form form))
(provide 'ob-table)
;;; ob-table.el ends here