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176 Commits

Author SHA1 Message Date
Ihor Radchenko 319563cef7
ob-R, ob-julia: Do not force-start session in Org Src buffers 
* lisp/ob-R.el (org-babel-R-associate-session): Set
`ess-gen-proc-buffer-name-function' to associate the right session
buffer if user requests session interaction from inside Org Src edit
buffer.
(org-babel-edit-prep:R): Remove in favor of
`org-babel-R-associate-session'.
* lisp/ob-julia.el (org-babel-julia-associate-session): Implement
analogous functionality.
(org-babel-edit-prep:julia): Remove in favor of
`org-babel-julia-associate-session'.
* etc/ORG-NEWS (~org-edit-special~ no longer force-starts session in R
and Julia source blocks): Document the change.
* lisp/org-src.el (org-src-associate-babel-session): Run
org-babel-<lang>-associate-session even when session is not yet
initiated.

Link: https://orgmode.org/list/87r0ir2ln8.fsf@gmail.com
 2024-01-28 20:04:31 +01:00
Kyle Meyer 72a2db86d9 Merge branch 'bugfix' 2024-01-06 16:02:02 -05:00
Po Lu 9f1d6dfd73 Backport commit 8e1c56ae4 from Emacs 
; Add 2024 to copyright years
8e1c56ae46754dd7baedff49a464f078f0e9912d
Po Lu
Tue Jan 2 09:47:10 2024 +0800
 2024-01-06 15:48:23 -05:00
Ihor Radchenko b6643884cb
ob-R, ob-julia: Use `ess-gen-proc-buffer-name-function' to control session buffer name 
* lisp/ob-R.el (org-babel-R-initiate-session):
* lisp/ob-julia.el (org-babel-julia-initiate-session): Do not use the
hack with renaming ESS buffer and instead indicate the session buffer
name to ESS appropriately through `ess-gen-proc-buffer-name-function'.

Link: https://orgmode.org/list/871qb21bp7.fsf@gmail.com
 2024-01-05 14:56:21 +01:00
Ihor Radchenko 3fcf3d2e24
* lisp/ob-R.el (org-babel-edit-prep:R): Add docstring 2023-10-02 16:29:10 +03:00
Ihor Radchenko 0eb9aa798c
* lisp/ob-R.el: Fix some checkdoc warnings 
(org-babel-execute:R):
(org-babel-variable-assignments:R):
(org-babel-R-initiate-session): Mention all the argument in the
docstring.
 2023-08-10 13:58:14 +03:00
Ihor Radchenko 4929f0c55f
* lisp/ob-R.el: Fix ESS compatibility 
(org-babel-R-initiate-session): Fix `require'.  Do not use obsolete
`R' function.
 2023-04-17 20:20:58 +02:00
Ihor Radchenko 2ebc518675
* lisp/ob-R.el: Fix ESS compatibility 
(org-babel-R-initiate-session): Fix `require'.  Do not use obsolete
`R' function.
 2023-04-17 20:17:55 +02:00
Matthew Trzcinski cb95d88936 ob-R.el/ob-python: Update `md5' calls to `org-id-uuid' 
* ob-R.el (ob-session-async-org-babel-R-evaluate-session): Use
`org-id-uuid' instead of `md5' as results placeholder.

* ob-python.el (org-babel-python-async-evaluate-session): Use
`org-id-uuid' instead of `md5' as results placeholder.
 2023-03-22 14:20:47 -04:00
Ihor Radchenko fe92a3cedb
Provide a uniform way to inform users about missing third-party packages 
* lisp/org-macs.el (org-require-package): New macro trying to load a
library and displaying custom error message or warning on failure.
The actual package (not library) name can be provided as optional
argument.

* lisp/ob-R.el (org-babel-R-initiate-session):
* lisp/ob-clojure.el (ob-clojure-eval-with-inf-clojure):
(ob-clojure-eval-with-cider):
(ob-clojure-eval-with-slime):
* lisp/ob-forth.el (org-babel-forth-session-execute):
* lisp/ob-gnuplot.el (org-babel-execute:gnuplot):
(org-babel-gnuplot-initiate-session):
* lisp/ob-haskell.el (org-babel-interpret-haskell):
(org-babel-haskell-initiate-session):
* lisp/ob-js.el (org-babel-execute:js):
(org-babel-js-initiate-session):
* lisp/ob-julia.el (org-babel-julia-initiate-session):
* lisp/ob-lisp.el (org-babel-execute:lisp):
* lisp/ob-ocaml.el (org-babel-prep-session:ocaml):
* lisp/ob-octave.el (org-babel-octave-initiate-session):
* lisp/ob-processing.el (org-babel-processing-view-sketch):
* lisp/ob-ruby.el (org-babel-execute:ruby):
(org-babel-ruby-initiate-session):
* lisp/ol-bbdb.el (org-bbdb-open):
(org-bbdb-complete-link):
(org-bbdb-anniv-export-ical):
* lisp/org-agenda.el:
* lisp/org-plot.el (org-plot/gnuplot):
* lisp/org.el:
* lisp/ox-ascii.el (org-ascii-table):
* lisp/ox-html.el (org-html-htmlize-generate-css):
* lisp/ox-org.el: Use the new macro.

* lisp/oc-csl.el: Add FIXME. oc-csl uses a custom function doing
similar job.

* lisp/ob-js.el (org-babel-js-initiate-session): Add FIXME noting that
the third-party package is outdated.
 2023-02-17 17:09:23 +03:00
Eli Zaretskii e0815d7545 Backport commit cae528457 from Emacs 
; Add 2023 to copyright years.
cae528457cb862dc886a34240c9d4c73035b6659
Eli Zaretskii
Sun Jan 1 05:31:12 2023 -0500
 2023-01-01 12:44:47 -05:00
Jeremie Juste 662e814bc0
ob-R.el: Restore the handling of org-list in as var 
* ob-R.el (org-babel-R-assign-elisp): Use the patch from
ccberry@health.ucsd.edu, to print org-list as a one column table as it
was the case in release_9.5. The break in R is due commit b4e437f96 *
ob-core: Resolve named list references to simple lists.

* test-ob-R.el (ob-R-nested-list): New function to test that org list
with multiple level are handled as expected in R.

see https://list.orgmode.org/87bkofh0ir.fsf@localhost/ for context.
 2022-12-14 12:36:38 +03:00
Kyle Meyer c75aec4e6c Merge branch 'km/from-emacs-master' 2022-11-23 15:13:24 -05:00
Stefan Kangas 529c2a3df1 Backport commit beaa2e495 from Emacs 
; Fix typos (misspelled symbols)
beaa2e49530b8149d2c22cb5fa15b8d48f7937b6
Stefan Kangas
Mon Nov 21 15:20:11 2022 +0100
 2022-11-23 15:09:24 -05:00
Ihor Radchenko e81a094383
Assert all the Org files to load the same Org version 
* lisp/org-compat.el (org-assert-version): New macro comparing Org
version at compile time and laod time.

Add `org-assert-version' call to all files:

* lisp/org-macs.el:
* lisp/org-crypt.el:
* lisp/org-ctags.el:
* lisp/org-cycle.el:
* lisp/org-datetree.el:
* lisp/org-duration.el:
* lisp/org-element.el (avl-tree):
* lisp/org-entities.el:
* lisp/org-faces.el:
* lisp/org-feed.el:
* lisp/org-fold-core.el:
* lisp/org-fold.el:
* lisp/org-footnote.el:
* lisp/org-goto.el:
* lisp/org-habit.el:
* lisp/org-id.el:
* lisp/org-indent.el:
* lisp/org-inlinetask.el:
* lisp/org-keys.el:
* lisp/org-lint.el:
* lisp/org-list.el:
* lisp/org-macro.el:
* lisp/org-mobile.el:
* lisp/org-mouse.el:
* lisp/org-num.el:
* lisp/org-pcomplete.el:
* lisp/org-persist.el:
* lisp/org-plot.el:
* lisp/org-protocol.el:
* lisp/org-refile.el:
* lisp/org-src.el:
* lisp/org-table.el:
* lisp/org-tempo.el:
* lisp/org-timer.el:
* lisp/org.el:
* lisp/ox-ascii.el:
* lisp/ox-beamer.el:
* lisp/ox-html.el:
* lisp/ox-icalendar.el:
* lisp/ox-koma-letter.el:
* lisp/ox-latex.el:
* lisp/ox-man.el:
* lisp/ox-md.el:
* lisp/ox-odt.el:
* lisp/ox-org.el:
* lisp/ox-publish.el:
* lisp/ox-texinfo.el:
* lisp/ox.el:
 2022-09-04 12:24:55 +08:00
Stefan Kangas 13d97ee18c
Prefer "website" to "homepage" 
Emacs now advises using "website" (instead of "homepage") and
consequently to use the "URL" comment header instead of "Homepage".

* README:
* README_ELPA:
* doc/org-guide.org (Creating Footnotes):
* doc/org-manual.org (Creating Footnotes):
* etc/styles/README (URL): Prefer "website" to "homepage".

* lisp/*.el:
* mk/org-fixup.el: Replace the "Homepage" header comment with "URL".
 2022-06-26 10:10:48 +08:00
Kyle Meyer aae2ac3a68 Merge branch 'bugfix' 2022-01-01 15:21:37 -05:00
Kyle Meyer 5a229cbc44 Update copyright year to 2022 2022-01-01 15:17:08 -05:00
Jeremie Juste 58db28db04
ob-R: Tidy up bits of the async implementation 
* ob-R.el (ob-session-async-org-babel-R-evaluate-session): Use
defvaralias for `ess-eval-visibly-p' instead of modifying user-defined
variable.  Remove temporary declaration that silences the byte-compiler.

* ob-R.el (org-babel-R-evaluate,
ob-session-async-org-babel-R-evaluate-session, org-babel-R-evaluate):
Remove mentions of unused argument `result-params'.
 2021-11-18 18:42:38 +08:00
Bastien 8b78d482a6 Fix email addresses in some *.el headers 2021-10-03 08:54:33 +02:00
Bastien 1344911585 lisp/ob-R.el: Fix compiler warnings 2021-09-29 14:16:47 +02:00
Bastien 806ac1b7f6 *el: Fix indentation 2021-09-29 09:22:47 +02:00
Jeremie Juste 72a48c306f ob-R.el: Patch async evaluation when :results output 
* lisp/ob-R.el (ob-session-async-org-babel-R-evaluate-session):
Make sure that `ess-inject-source' is set to the default
'function-and-buffer before running `ess-eval-buffer'.  Return
`ess-inject-source' to its user-specified state afterwards.
 2021-09-28 18:22:18 +02:00
Jeremie Juste 01557eef57 ob-R.el: Patch async evaluation when :results output 
* lisp/ob-R.el (ob-session-async-org-babel-R-evaluate-session): Make
sure that `ess-eval-visibly' is nil before evaluating the temporary
buffer, but return ess-eval-visibly to it's original state afterwards.
 2021-09-28 18:22:15 +02:00
Jeremie Juste 51a60cd53f lisp/ob-R: Async evaluation in R 
* lisp/ob-R.el (ob-session-async-R-indicator): Add constant
representing a prefix R to identity session.
(ob-session-async-org-babel-R-evaluate-session): New function to
evaluate R src block asynchrously.
(ob-session-async-R-value-callback): New function that calls back
the result of the asynchronous evaluation.
(org-babel-R-evaluate): Add `async' parameter and call
`ob-session-async-org-babel-R-evaluate-session' if `async'
parameter is present.
(org-babel-execute:R): Call `org-babel-comint-use-async' to check
if async is among `params' and add async parameter to
`org-babel-R-evaluate'.

* testing/lisp/test-ob-R.el: Add 7 more tests for async
evaluations, also taken from the `ob-session-async' package.

This is almost a carbon copy of Jack Kamm's `ob-session-async'.
The original source code can be found
https://github.com/jackkamm/ob-session-async.

Please refer to the following thread to trace back the discussion
on async evaluation in R:

https://list.orgmode.org/87eed9g9p6.fsf@gmail.com/
 2021-09-28 18:22:12 +02:00
Jeremie Juste ac8c009e00 lisp/ob-R.el: Fix session output with substrings matching prompts 
* lisp/ob-R.el (org-babel-R-evaluate-session): New implementation for session output
results, that concat "^" to comint-prompt-regexp to avoid prompt
confusion with R.

Patch suggested by Jack Kamm:
https://orgmode.org/list/87h7slgbi5.fsf@gmail.com/
 2021-05-03 00:15:09 +02:00
Kyle Meyer e0fb2339f4 Merge branch 'km/from-emacs-master' 
Porting from Emacs's master to Org's maint branch has been on hold
leading up to the Emacs 27.2 release to avoid any required fixup syncs
carrying those commits into the emacs-27 branch.  This merge brings
those changes into master.  The km/from-emacs-master branch should be
merged to maint when Emacs 27.2 has been released (assuming Org 9.5
hasn't been released, in which case maint will be tracking 9.5.x and
already include these changes).
 2021-02-14 18:06:23 -05:00
Stefan Kangas d904f9e5da Backport commit f88a7897a from Emacs 
* lisp/ob-R.el (org-babel-R-write-object-command):
* lisp/org-attach.el (org-attach-after-change-hook):
* lisp/org.el (org-stamp-time-of-day-regexp): Shorten doc strings to
not exceed 80-column limits.  (Bug#44858)

Shorten over-wide docstrings in variables
f88a7897a80ee9129bdc444cafff32d026c4b6d8
Stefan Kangas
Sat Dec 19 18:21:06 2020 +0100
 2021-02-14 17:38:07 -05:00
Jeremie Juste 0c6ab87d11 ob-R.el: For :results value return empty string instead of nil 2021-02-06 21:36:55 +01:00
Kyle Meyer 291993888d Merge branch 'maint' 2021-01-01 15:02:10 -05:00
Kyle Meyer 99eafe3787 Update copyright year to 2021 2021-01-01 14:59:01 -05:00
Bastien 36f4df8925 lisp/ob-R.el: Add Jeremie Juste as a maintainer 2020-10-26 10:52:12 +01:00
Bastien d9fe6aeafe lisp/ob-R.el: Don't throw an error when result cannot be parsed 
* lisp/ob-R.el (org-babel-R-process-value-result): When the result
cannot be parsed, return an error as the output.

Thanks to Greg Minshall for reporting this.
 2020-05-24 16:08:52 +02:00
Bastien 6a1f6ee1f8 Tiny formatting fixes 
* lisp/ox.el (org-export-table-dimensions):
* lisp/ox-texinfo.el (org-texinfo-template):
* lisp/ox-md.el (org-md-link):
* lisp/ox-icalendar.el (org-icalendar-use-UTC-date-time-p):
* lisp/ox-ascii.el (org-ascii-fixed-width):
* lisp/org.el (org-context):
* lisp/org-table.el (org-table-eval-formula)
(org-table-export):
* lisp/org-refile.el:
* lisp/org-plot.el (org-plot/gnuplot-to-grid-data):
* lisp/org-num.el (org-num):
* lisp/org-mouse.el (org-mouse-popup-global-menu)
(org-mouse-context-menu):
* lisp/org-macro.el (org-macro):
* lisp/org-lint.el (org-lint):
* lisp/org-keys.el (org-keys):
* lisp/org-duration.el:
* lisp/org-clock.el (org-clock-get-last-clock-out-time)
(org-clock-update-mode-line, org-find-open-clocks):
* lisp/org-agenda.el (org-diary)
(org-agenda-check-for-timestamp-as-reason-to-ignore-todo-item)
(org-agenda-highlight-todo, org-cmp-alpha)
(org-agenda-filter-by-category):
* lisp/ol.el (org-link-expand-abbrev, ol):
* lisp/ol-docview.el (ol-docview):
* lisp/ol-bibtex.el (org-execute-file-search-in-bibtex)
(org-bibtex, org-bibtex-read):
* lisp/ol-bbdb.el (org-bbdb-anniversary-description):
* lisp/ob-tangle.el (org-babel-tangle-jump-to-org):
* lisp/ob-table.el (org-babel-table-truncate-at-newline):
* lisp/ob-stan.el:
* lisp/ob-sqlite.el (org-babel-sqlite-table-or-scalar):
* lisp/ob-sql.el:
* lisp/ob-shen.el:
* lisp/ob-shell.el (org-babel-prep-session:shell)
(org-babel-prep-session:shell):
* lisp/ob-sed.el (org-babel-execute:sed)
(org-babel-execute:sed):
* lisp/ob-screen.el:
* lisp/ob-sass.el:
* lisp/ob-ruby.el (org-babel-prep-session:ruby)
(org-babel-prep-session:ruby):
* lisp/ob-ref.el (org-babel-ref-resolve, ob-ref):
* lisp/ob-python.el (org-babel-prep-session:python)
(org-babel-prep-session:python):
* lisp/ob-plantuml.el:
* lisp/ob-picolisp.el:
* lisp/ob-perl.el:
* lisp/ob-org.el:
* lisp/ob-octave.el (org-babel-prep-session:octave)
(org-babel-prep-session:octave)
(org-babel-octave-evaluate-session):
* lisp/ob-ocaml.el:
* lisp/ob-mscgen.el (org-babel-execute:mscgen)
(org-babel-execute:mscgen):
* lisp/ob-maxima.el:
(ob-maxima):
* lisp/ob-matlab.el:
* lisp/ob-makefile.el:
* lisp/ob-lua.el (org-babel-prep-session:lua)
(org-babel-prep-session:lua):
* lisp/ob-lisp.el:
* lisp/ob-ledger.el:
* lisp/ob-latex.el (org-babel-expand-body:latex)
(org-babel-expand-body:latex, ob-latex):
* lisp/ob-js.el:
* lisp/ob-java.el:
* lisp/ob-io.el (org-babel-prep-session:io)
(org-babel-prep-session:io):
* lisp/ob-hledger.el:
* lisp/ob-haskell.el:
* lisp/ob-groovy.el (org-babel-groovy-wrapper-method)
(org-babel-groovy-evaluate):
* lisp/ob-gnuplot.el:
* lisp/ob-fortran.el (org-babel-expand-body:fortran)
(org-babel-expand-body:fortran):
* lisp/ob-forth.el (org-babel-forth-session-execute):
* lisp/ob-exp.el (ob-exp):
* lisp/ob-eval.el:
* lisp/ob-emacs-lisp.el:
* lisp/ob-ebnf.el:
* lisp/ob-dot.el:
* lisp/ob-ditaa.el:
* lisp/ob-css.el:
* lisp/ob-core.el (org-babel-put-rownames):
* lisp/ob-coq.el:
* lisp/ob-comint.el:
* lisp/ob-calc.el:
* lisp/ob-awk.el:
* lisp/ob-asymptote.el:
* lisp/ob-abc.el:
* lisp/ob-R.el (org-babel-prep-session:R): Formatting fixes.
 2020-02-18 22:57:37 +01:00
Kyle Meyer ff5fc050d3 Update copyright year to 2020 2020-01-01 13:38:46 -05:00
Bastien f584d37a67 Update copyright year 2019-01-01 11:50:56 +01:00
Tim Landscheidt b289a65be7 Use https for links to orgmode.org 
TINYCHANGE
 2018-01-19 18:14:58 +01:00
Kyle Meyer 3e1641ef0a Update copyright years 2018-01-07 00:27:54 -05:00
Paul Eggert ff0dcf52a5 Backport commit bc511a64f from Emacs 
Prefer HTTPS to FTP and HTTP in documentation
bc511a64f6da9ab51acc7c8865e80c4a4cb655c2
Paul Eggert
Wed Sep 13 15:54:37 2017 -0700
 2017-09-17 00:28:38 -04:00
Kyle Meyer 0d3683f2cd Merge branch 'maint' 2017-01-05 20:23:58 -05:00
Kyle Meyer 713f785017 Update copyright years 2017-01-05 20:19:37 -05:00
Charles Berry ed0c8cb995 org-babel-execute:R fix `:colnames yes' clash with `:results graphics' 
* lisp/ob-R.el (org-babel-execute:R): The `:colnames' and `:rownames'
  header arguments are ignored if `:results graphics' is specified.

Reported by: Kodi Arfer <kodi@arfer.net>
Archived-At: <http://permalink.gmane.org/gmane.emacs.orgmode/111072>
 2016-12-28 18:35:59 -08:00
Aaron Ecay 79650ffbbd Use assq instead of assoc for :keywords 
* lisp/ob-C.el (org-babel-C-execute):
* lisp/ob-J.el (org-babel-execute:J):
* lisp/ob-R.el (org-babel-edit-prep:R):
(org-babel-expand-body:R):
(org-babel-execute:R):
(org-babel-variable-assignments:R):
(org-babel-R-initiate-session):
* lisp/ob-abc.el (org-babel-execute:abc):
* lisp/ob-asymptote.el (org-babel-execute:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-clojure.el (org-babel-expand-body:clojure):
(org-babel-execute:clojure):
* lisp/ob-core.el (org-babel-expand-body:generic):
(org-babel-load-in-session):
(org-babel-initiate-session):
(org-babel-open-src-block-result):
(org-babel-process-params):
(org-babel-insert-result):
(org-babel-expand-noweb-references):
* lisp/ob-ditaa.el (org-babel-execute:ditaa):
* lisp/ob-dot.el (org-babel-execute:dot):
* lisp/ob-ebnf.el (org-babel-execute:ebnf):
* lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp):
(org-babel-execute:emacs-lisp):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
(org-babel-exp-do-export):
(org-babel-exp-code):
* lisp/ob-forth.el (org-babel-execute:forth):
* lisp/ob-fortran.el (org-babel-execute:fortran):
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars):
(org-babel-expand-body:gnuplot):
(org-babel-execute:gnuplot):
* lisp/ob-groovy.el (org-babel-execute:groovy):
* lisp/ob-haskell.el (org-babel-execute:haskell):
* lisp/ob-io.el (org-babel-execute:io):
* lisp/ob-java.el (org-babel-execute:java):
* lisp/ob-js.el (org-babel-execute:js):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/ob-ledger.el (org-babel-execute:ledger):
* lisp/ob-lilypond.el (org-babel-lilypond-process-basic):
* lisp/ob-lisp.el (org-babel-expand-body:lisp):
(org-babel-execute:lisp):
* lisp/ob-lua.el (org-babel-execute:lua):
* lisp/ob-maxima.el (org-babel-execute:maxima):
* lisp/ob-mscgen.el (org-babel-execute:mscgen):
* lisp/ob-ocaml.el (org-babel-execute:ocaml):
* lisp/ob-octave.el (org-babel-execute:octave):
* lisp/ob-org.el (org-babel-execute:org):
* lisp/ob-perl.el (org-babel-execute:perl):
* lisp/ob-picolisp.el (org-babel-execute:picolisp):
* lisp/ob-plantuml.el (org-babel-execute:plantuml):
* lisp/ob-python.el (org-babel-execute:python):
* lisp/ob-ruby.el (org-babel-execute:ruby):
* lisp/ob-sass.el (org-babel-execute:sass):
* lisp/ob-scala.el (org-babel-execute:scala):
* lisp/ob-scheme.el (org-babel-execute:scheme):
* lisp/ob-screen.el (org-babel-execute:screen):
(org-babel-prep-session:screen):
* lisp/ob-shell.el (org-babel-execute:shell):
(org-babel-variable-assignments:shell):
(org-babel-sh-evaluate):
* lisp/ob-shen.el (org-babel-execute:shen):
* lisp/ob-sql.el (org-babel-execute:sql):
* lisp/ob-sqlite.el (org-babel-execute:sqlite):
* lisp/ob-tangle.el (org-babel-tangle):
(org-babel-tangle-single-block):
* lisp/org-src.el (org-src-associate-babel-session):
* lisp/org.el (org-next-link):
Use `assq' instead of `assoc' with :keyword keys.
 2016-09-23 11:20:09 +01:00
Aaron Ecay ab21e2b72d Use file-name-extension where appropriate 
* lisp/ob-R.el (org-babel-R-construct-graphics-device-call):
* lisp/ob-asymptote.el (org-babel-execute:asymptote):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/org-agenda.el (org-agenda-write):
* lisp/ox-odt.el (org-odt--copy-formula-file): Use `file-name-extension'
instead of string munging.
 2016-09-01 18:46:48 +01:00
Aaron Ecay 6b52bc6a21 Clean up string handling. 
* lisp/org-compat.el (string-prefix-p, string-suffix-p):
Add compatibility definitions for 24.3.

* lisp/ob-R.el (org-babel-edit-prep:R):
* lisp/ob-core.el (org-babel-demarcate-block):
* lisp/ob-js.el (org-babel-js-read):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/ob-ref.el (org-babel-ref-parse):
* lisp/ob-shell.el (org-babel-variable-assignments:shell):
* lisp/org-protocol.el (org-protocol-create):
* lisp/org-table.el (org-table-field-info):
* lisp/org.el (org-get-buffer-for-internal-link):
* lisp/ox-publish.el (org-publish-compare-directory-files):
* lisp/ox-texinfo.el (org-texinfo-template):
Use `string-{suffix,prefix}-p' instead of `string-match(-p)'.

* lisp/ob-python.el (org-babel-python-read-string):
Ditto, also use `substring' rather than `match-string'.

* lisp/org-table.el (org-table-copy-down):
(org-table-insert-hline, org-table-current-field-formula):
(org-table-get-formula): Use `string-match-p' instead of
`string-match'.
 2016-08-24 16:05:54 +01:00
Nicolas Goaziou 31b30e5aee ob-R: Silence byte-compiler 
* lisp/ob-R.el (org-babel-R-evaluate-external-process):
(org-babel-R-evaluate-session): Silence byte-compiler.
 2016-07-25 16:24:14 +02:00
Nicolas Goaziou d13b0745dc Mark a few functions as obsolete 
* lisp/ob-R.el (org-babel-variable-assignments:R):
* lisp/ob-ref.el (org-babel-ref-goto-headline-id):
* lisp/org-agenda.el (org-agenda-prepare-window):
(org-agenda-switch-to):
* lisp/org-capture.el (org-capture-goto-target):
* lisp/org-clock.el (org-clock-goto):
(org-clock-special-range):
* lisp/org-ctags.el (org-ctags-visit-buffer-or-file):
* lisp/org-eshell.el (org-eshell-open):
* lisp/org-feed.el (org-feed-show-raw-feed):
* lisp/org-id.el (org-id-goto):
* lisp/org-irc.el (org-irc-visit-erc):
* lisp/org-macs.el (org-string-nw-p):
* lisp/org-mobile.el (org-mobile-apply):
* lisp/org-src.el (org-src-switch-to-buffer):
* lisp/org.el (org-get-location):
(org-tree-to-indirect-buffer):
(org-mark-ring-goto):
(org-refile):
(org-add-log-note):
(org-revert-all-org-buffers):
(org-switchb):
(org-cycle-agenda-files):
(org-submit-bug-report):
(org-goto-marker-or-bmk):
* lisp/ox-html.el (org-html-htmlize-generate-css): Silence byte
  compiler.

The following functions are marked as obsolete:
- `org-string-match-p'
- `org-number-sequence'
- `org-floor*'
- `org-pop-to-buffer-same-window'
- `org-delete-directory'
- `org-buffer-narrowed-p'
 2016-06-23 10:00:00 +02:00
Kyle Meyer 4925d5be7b Merge branch 'maint' 2016-05-15 19:00:30 -04:00
Kyle Meyer 19cf68da90 Fix remaining declare-function issues 
* lisp/ob-shell.el (org-babel-comint-in-buffer):
(org-babel-comint-with-output):
* lisp/org-table.el (org-export-create-backend):
* lisp/org.el (org-babel-do-in-edit-buffer): Indicate that FN is not a
defun.
* lisp/ob-tangle.el (org-string-nw-p):
* lisp/org-table.el (org-export-create-backend):
(org-export-data-with-backend):
(org-export-filter-apply-functions):
(org-export-first-sibling-p):
(org-export-get-backend):
(org-export-get-environment):
(org-export-install-filters):
(org-export-table-has-special-column-p):
(org-export-table-row-is-special-p): Correct source file name.
* lisp/ob-R.el (ess-wait-for-process):
* lisp/org-clock.el (calendar-iso-to-absolute):
* lisp/org-list.el (org-previous-line-empty-p):
* lisp/org-pcomplete.el (org-entry-properties):
* lisp/org-table.el (org-export-data-with-backend):
(org-export-get-environment):
* lisp/org.el (org-element-interpret-data): Correct argument list.
 2016-05-15 18:59:20 -04:00
Nicolas Goaziou 7213aa0f76 ob-R: Silence byte-compiler 
* lisp/ob-R.el (org-babel-expand-body:R): Silence byte-compiler.
 2016-02-02 18:02:08 +01:00