Commit Graph

145 Commits

Author SHA1 Message Date
Jack Kamm 939cf16bc7 ob-python: Fix hanging on emacs-26.3 by adding indicator token
* lisp/ob-python.el (org-babel-python-eoe-indicator): Add back
variable for end-of-expression indicator.
(org-babel-python--shift-right): New function to indent source body.
(org-babel-python-evaluate-external-process): Call new function org-babel-python--shift-right.
(org-babel-python--send-string): Wrap body in try-except-finally,
print indicator token, and find end of output via the token.

cf https://orgmode.org/list/871rjcan53.fsf@kyleam.com/
2020-09-09 06:24:07 -07:00
Jack Kamm 6f9929fc3b ob-python: Replace session value format string with function
* lisp/ob-python.el (org-babel-python--eval-ast): Removed.
(org-babel-python-format-session-value): New function that returns
Python code to evaluate for sessions with value results.
(org-babel-python-evaluate-session): Replace
org-babel-python--eval-ast with org-babel-python-format-session-value.

Motivation is that the new function is more flexible than the old
format string.  We can pass in the full result-params, which can be
used to add more formatting options in future.  We could also add more
optional arguments in the future to extend this functionality.

This function will be particularly helpful for a couple patches after
9.4:
- ob-reticulate
  - https://orgmode.org/list/875z98gj4f.fsf@gmail.com/
- Improved formatting
  - https://orgmode.org/list/87eenpfe77.fsf@gmail.com/

However, I add this function in now 9.4, so those future patches can
rely on it in 9.4.  In particular, ob-reticulate will probably be
packaged separately from org-mode, and I want to provide a stable
interface to it so that it can be released after 9.4.
2020-09-07 09:39:21 -07:00
Jack Kamm 4df12ea391 ob-python: Improve robustness of session evaluation
* lisp/ob-python.el (py-send-string-no-output): Remove external function.
(py-shell-send-string): Add external function.
(org-babel-python--eval-ast): Remove blank lines.
(org-babel-python--send-string): New function to send string to Python
process and return output.
(org-babel-python-evaluate-session): Call
org-babel-python--send-string to evaluate code.

New function to send code to Python session.  It has the following
desirable properties:
- Wait for evaluation to finish before returning.
- Input can have arbitrary spaces/newlines.
- Avoid echoing input to the session.
- Echo all output to the session.
- Output is also captured and returned separately.
- Avoid adding extra prompts to the session.
- Work well with both Python and IPython repls.

The implementation borrows from `python-shell-send-string-no-output'
and `org-babel-comint-with-output'.  This commit is related to
632ceabb1, which tried to implement the same thing, but also
introduced bugs, and had to be partially reverted in b5709ddc9.
2020-09-06 18:15:04 -07:00
Jack Kamm 5d289d2b3e ob-python: fix startup messages leaking into output
* lisp/ob-python.el (org-babel-python-initiate-session-by-key): Remove
workaround for emacs<24.1.  Sleep after starting Python, to prevent
startup messages leaking into output results.
* testing/lisp/test-ob-python.el (test-ob-python/session-multiline):
Remove workaround for startup message leaking into results.
2020-09-06 18:15:04 -07:00
Jack Kamm e617d1afd0 ob-python: Add maintainer to header 2020-09-04 17:59:18 -07:00
Jack Kamm b5709ddc98 ob-python: Fix session blocks not waiting for value result
* lisp/ob-python.el (py-shell-send-string): Remove unneeded
declare-function.
(org-babel-python-eoe-indicator): Add back this const.
(org-babel-python--eval-ast): Fix spacing so the block can be entered
line by line into the interpreter.
(org-babel-python-evaluate-session): Revert previous changes to
evaluation for value results.
* testing/lisp/test-ob-python.el (test-ob-python/session-value-sleep):
New test for session blocks that don't return immediately.

632ceabb1 introduced a bug where session blocks don't wait for value
results if not returned immediately.  This reverts part of that
commit, specifically for evaluation of session blocks with value
results.  It leaves other parts of that commit alone, for example the
changes to session output results, which is more robust handling
prompts from ipython interpreter.

A downside of reverting the session value implementation is that the
ugly code from org-babel-python--eval-ast is again printed in the
console, but this is less bad than the new bug that was introduced by
the change, hence reverted.
2020-09-04 17:51:37 -07:00
Jack Kamm 632ceabb14 ob-python: Refactor session evaluation
* lisp/ob-python.el: Require python.el at top-level.
(org-babel-python-eoe-indicator): Remove unused variable.
(org-babel-python-initiate-session-by-key): Rename
python-buffer to avoid obsolete warning.
(org-babel-python-evaluate-external-process): Remove unnecessary
require.
(org-babel-python--exec-tmpfile): Simplify this template.
(org-babel-python--eval-ast): Add printing of results to this
template, requiring additional string escapes.
(org-babel-python-evaluate-session): Simplify to use adjusted
templates, and call out to functionality in python.el or
python-mode.el.
(org-babel-python-evaluate-session): Simplified to use adjusted templates.

This commit refactors and cleans up code related to session
evaluation. python.el is now required at the top-level. Python
templates for wrapping code are simplified. Instead of directly
pasting code to the REPL, functionality from python.el and
python-mode.el are used; this fixes issues with code being echoed to
the REPL, and should be generally more robust. Finally, in the
:results value case, special handling of exceptions is removed, and we
no longer print None when the last statement isn't an expression.
2020-08-28 22:07:56 -07:00
Jack Kamm 30a50d1c0f ob-python: Fix discrepancy of single/multi-line code blocks
* lisp/ob-python.el (org-babel-python-evaluate-session): Fix
discrepancy between how single-line and multiline code blocks return
output.

For example, before this commit, the 2 blocks behaved differently:

+begin_src python :session :results output
  pass
  "foo"
+end_src

+RESULTS:

+begin_src python :session :results output
  "foo"
+end_src

+RESULTS:
: 'foo'

But now, they both behave as the former.
2020-08-28 07:39:06 -07:00
Christian Vanderwall 312a646fb8 ob-python.el: Fix issue with sessions on remote machines
* lisp/ob-python.el (org-babel-python-evaluate-session): Process
temporary file name with `org-babel-process-file-name' before
inserting it into code Python code snippets.

Before this change, the entire temporary filename was sent to the
Python session for execution, causing a 'No such file' error when the
filename had a Tramp format such as
/ssh:user@server:/tmp/python-ABCDEF.

TINYCHANGE
2020-08-20 18:34:00 -07:00
Jack Kamm 3cec17cde5 ob-python.el: Fix multiline strings in non-session :results value
* lisp/ob-python.el (org-babel-python-evaluate-external-process): Use
functions from python.el to indent lines, avoiding multiline strings.
* testing/lisp/test-ob-python.el (test-ob-python/multiline-var): Set
test as expected to succeed.
(test-ob-python/multiline-str): Add test for multiline string in body.
(test-ob-python/header-var-assignment): Test that :var is in correct
scope and can be assigned to.

cf. https://orgmode.org/list/87tv009l9a.fsf@gmail.com/#t
2020-06-09 21:01:12 -07:00
Jack Kamm d73fd145c0 ob-python.el: Revert fix for multiline var
* lisp/ob-python.el (org-babel-execute:python,
org-babel-python-evaluate): Move variable assignment back to body from
preamble.
* testing/lisp/test-ob-python.el (test-ob-python/multiline-var): Mark
unit test for multiline-variable as expected to fail.

Reverts 6149b6cb6 which fixed multiline vars in ob-python, but caused
a new bug (https://lists.gnu.org/archive/html/emacs-orgmode/2020-05/msg00719.html).
2020-05-28 07:29:31 -07:00
Jack Kamm 6149b6cb6d ob-python.el: Assign variables in preamble instead of body
* lisp/ob-python.el (org-babel-execute:python): Add variable
assignment to preamble instead of body.
(org-babel-python-evaluate): Concatenate preamble (which now includes
variable assignment) to body before session evaluation.

Fixes
https://lists.gnu.org/archive/html/emacs-orgmode/2020-03/msg00126.html. For
non-session evaluation, ob-python adds indentation to the body inside
main(), but this was adding spurious indentation for multiline strings
passed through :var. This commit fixes the issue by moving variable
assignment out of the body and into the preamble.
2020-05-24 07:49:22 -07:00
stardiviner 4f31aa2d3b ob-python.el: Fix session initiation when using python-mode.el
* lisp/ob-python.el (org-babel-python-initiate-session-by-key): Fixes
new session initiation when org-babel-python-mode is
python-mode.el.
2020-02-19 07:39:28 -08:00
Bastien 6a1f6ee1f8 Tiny formatting fixes
* lisp/ox.el (org-export-table-dimensions):
* lisp/ox-texinfo.el (org-texinfo-template):
* lisp/ox-md.el (org-md-link):
* lisp/ox-icalendar.el (org-icalendar-use-UTC-date-time-p):
* lisp/ox-ascii.el (org-ascii-fixed-width):
* lisp/org.el (org-context):
* lisp/org-table.el (org-table-eval-formula)
(org-table-export):
* lisp/org-refile.el:
* lisp/org-plot.el (org-plot/gnuplot-to-grid-data):
* lisp/org-num.el (org-num):
* lisp/org-mouse.el (org-mouse-popup-global-menu)
(org-mouse-context-menu):
* lisp/org-macro.el (org-macro):
* lisp/org-lint.el (org-lint):
* lisp/org-keys.el (org-keys):
* lisp/org-duration.el:
* lisp/org-clock.el (org-clock-get-last-clock-out-time)
(org-clock-update-mode-line, org-find-open-clocks):
* lisp/org-agenda.el (org-diary)
(org-agenda-check-for-timestamp-as-reason-to-ignore-todo-item)
(org-agenda-highlight-todo, org-cmp-alpha)
(org-agenda-filter-by-category):
* lisp/ol.el (org-link-expand-abbrev, ol):
* lisp/ol-docview.el (ol-docview):
* lisp/ol-bibtex.el (org-execute-file-search-in-bibtex)
(org-bibtex, org-bibtex-read):
* lisp/ol-bbdb.el (org-bbdb-anniversary-description):
* lisp/ob-tangle.el (org-babel-tangle-jump-to-org):
* lisp/ob-table.el (org-babel-table-truncate-at-newline):
* lisp/ob-stan.el:
* lisp/ob-sqlite.el (org-babel-sqlite-table-or-scalar):
* lisp/ob-sql.el:
* lisp/ob-shen.el:
* lisp/ob-shell.el (org-babel-prep-session:shell)
(org-babel-prep-session:shell):
* lisp/ob-sed.el (org-babel-execute:sed)
(org-babel-execute:sed):
* lisp/ob-screen.el:
* lisp/ob-sass.el:
* lisp/ob-ruby.el (org-babel-prep-session:ruby)
(org-babel-prep-session:ruby):
* lisp/ob-ref.el (org-babel-ref-resolve, ob-ref):
* lisp/ob-python.el (org-babel-prep-session:python)
(org-babel-prep-session:python):
* lisp/ob-plantuml.el:
* lisp/ob-picolisp.el:
* lisp/ob-perl.el:
* lisp/ob-org.el:
* lisp/ob-octave.el (org-babel-prep-session:octave)
(org-babel-prep-session:octave)
(org-babel-octave-evaluate-session):
* lisp/ob-ocaml.el:
* lisp/ob-mscgen.el (org-babel-execute:mscgen)
(org-babel-execute:mscgen):
* lisp/ob-maxima.el:
(ob-maxima):
* lisp/ob-matlab.el:
* lisp/ob-makefile.el:
* lisp/ob-lua.el (org-babel-prep-session:lua)
(org-babel-prep-session:lua):
* lisp/ob-lisp.el:
* lisp/ob-ledger.el:
* lisp/ob-latex.el (org-babel-expand-body:latex)
(org-babel-expand-body:latex, ob-latex):
* lisp/ob-js.el:
* lisp/ob-java.el:
* lisp/ob-io.el (org-babel-prep-session:io)
(org-babel-prep-session:io):
* lisp/ob-hledger.el:
* lisp/ob-haskell.el:
* lisp/ob-groovy.el (org-babel-groovy-wrapper-method)
(org-babel-groovy-evaluate):
* lisp/ob-gnuplot.el:
* lisp/ob-fortran.el (org-babel-expand-body:fortran)
(org-babel-expand-body:fortran):
* lisp/ob-forth.el (org-babel-forth-session-execute):
* lisp/ob-exp.el (ob-exp):
* lisp/ob-eval.el:
* lisp/ob-emacs-lisp.el:
* lisp/ob-ebnf.el:
* lisp/ob-dot.el:
* lisp/ob-ditaa.el:
* lisp/ob-css.el:
* lisp/ob-core.el (org-babel-put-rownames):
* lisp/ob-coq.el:
* lisp/ob-comint.el:
* lisp/ob-calc.el:
* lisp/ob-awk.el:
* lisp/ob-asymptote.el:
* lisp/ob-abc.el:
* lisp/ob-R.el (org-babel-prep-session:R): Formatting fixes.
2020-02-18 22:57:37 +01:00
Bastien fc3f1e6b28 Revert "ob-python: Session returns empty string if no return value"
This reverts commit 5fc4576548.
2020-02-17 23:46:49 +01:00
Jack Kamm 5fc4576548 ob-python: Session returns empty string if no return value
* lisp/ob-python.el (org-babel-python--eval-ast): Change sessions to
return an empty string, instead of None, if there is no return value.
2020-02-17 18:30:47 +01:00
Jack Kamm 9b22f597a0 ob-python: Remove unused variable
* lisp/ob-python.el (org-babel-python-evaluate-session): Remove unused
lexical variable `last-indent' that was causing a compilation warning
2020-02-04 06:53:58 -08:00
Jack Kamm cc89d5523f ob-python: Fix several issues with :session :results value
* lisp/ob-python.el (org-babel-python-evaluate-session): Fix a few
related issues with :session :results value blocks, including broken
if-else statements, indented blocks with blank lines, and returning
the wrong value when underscore has been used.
(org-babel-python--eval-ast): New constant variable, a string
consisting of Python code to execute a source block using ast.

Previously, python blocks with parameters ":session :results value"
were entered line-by-line into the Python session, which could cause
issues around indentation and new lines.  Now, such python blocks are
written to temp files, then the built-in ast python module is used to
parse and execute them, and to extract the last line separately to
return as a result.  Introduces a change in behavior, requiring that
the last line must be a top-level expression statement if its result
is to be saved (otherwise, the result is None).
2020-02-03 21:17:38 -08:00
Kyle Meyer ff5fc050d3 Update copyright year to 2020 2020-01-01 13:38:46 -05:00
Juanma Barranquero 97feee0469 Backport commit 114323226 from Emacs
* lisp/ob-C.el (org-babel-prep-session:C)
(org-babel-load-session:C):
* lisp/ob-J.el (org-babel-execute:J):
* lisp/ob-asymptote.el (org-babel-prep-session:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-core.el (org-babel-process-file-name):
* lisp/ob-ebnf.el (org-babel-execute:ebnf):
* lisp/ob-forth.el (org-babel-execute:forth):
* lisp/ob-fortran.el (org-babel-execute:fortran)
(org-babel-prep-session:fortran, org-babel-load-session:fortran):
* lisp/ob-groovy.el (org-babel-execute:groovy):
* lisp/ob-io.el (org-babel-execute:io):
* lisp/ob-js.el (org-babel-execute:js):
* lisp/ob-lilypond.el (org-babel-default-header-args:lilypond)
(org-babel-lilypond-compile-post-tangle)
(org-babel-lilypond-display-pdf-post-tangle)
(org-babel-lilypond-tangle)
(org-babel-lilypond-execute-tangled-ly)
(org-babel-lilypond-compile-lilyfile)
(org-babel-lilypond-check-for-compile-error)
(org-babel-lilypond-process-compile-error)
(org-babel-lilypond-mark-error-line)
(org-babel-lilypond-parse-error-line)
(org-babel-lilypond-attempt-to-open-pdf)
(org-babel-lilypond-attempt-to-play-midi)
(org-babel-lilypond-switch-extension)
(org-babel-lilypond-set-header-args):
* lisp/ob-lua.el (org-babel-prep-session:lua):
* lisp/ob-picolisp.el (org-babel-execute:picolisp):
* lisp/ob-processing.el (org-babel-prep-session:processing):
* lisp/ob-python.el (org-babel-prep-session:python):
* lisp/ob-scheme.el (org-babel-scheme-capture-current-message)
(org-babel-scheme-execute-with-geiser, org-babel-execute:scheme):
* lisp/ob-shen.el (org-babel-execute:shen):
* lisp/org-agenda.el (org-agenda-entry-types)
(org-agenda-move-date-from-past-immediately-to-today)
(org-agenda-time-grid, org-agenda-sorting-strategy)
(org-agenda-filter-by-category, org-agenda-forward-block):
* lisp/org-faces.el (org-verbatim, org-cycle-level-faces):
* lisp/org-indent.el (org-indent-set-line-properties):
* lisp/org-macs.el (org-get-limited-outline-regexp):
* lisp/org-mobile.el (org-mobile-files):
* lisp/org.el (org-use-fast-todo-selection)
(org-extend-today-until, org-use-property-inheritance)
(org-refresh-effort-properties)
(org-track-ordered-property-with-tag, org-shiftright):
* lisp/ox-html.el (org-html-checkbox-type):
* lisp/ox-man.el (org-man-source-highlight)
(org-man-verse-block):
* lisp/ox-publish.el (org-publish-sitemap-default): Assorted
docfixes.

lisp/*.el: Fix typos and other trivial doc fixes
11432322650830fe9ae365f4113733a79226056d
Juanma Barranquero
Sat Sep 21 00:27:53 2019 +0200
2019-09-29 15:47:58 -04:00
Bastien f584d37a67 Update copyright year 2019-01-01 11:50:56 +01:00
Aaron Ecay ccfe51d83c ob-*: single armed “if” -> “when”
* lisp/ob-C.el (org-babel-C-val-to-base-type):
* lisp/ob-comint.el (org-babel-comint-buffer-livep):
* lisp/ob-fortran.el (org-babel-fortran-ensure-main-wrap):
* lisp/ob-octave.el (org-babel-octave-import-elisp-from-file):
* lisp/ob-scheme.el (org-babel-scheme-get-repl): Transform ‘if’ with
no else branch to ‘when’
* lisp/ob-lua.el (org-babel-lua-evaluate-external-process):
* lisp/ob-python.el (org-babel-python-evaluate-external-process):
Simplify conditional logic slightly.
2018-05-10 01:14:24 +01:00
Aaron Ecay 4afb7f747b Update declare-function calls for functions that have moved.
In cases where functions have moved from org.el into org-macs.el, it
is often possible to replace declare-function by (require 'org-macs)
2018-05-10 01:04:12 +01:00
Nicolas Goaziou 3e1f111c3b ob-python: Small refactoring
* lisp/ob-python.el (org-babel-python-evaluate-session): Small
  refactoring.
2018-04-03 21:27:59 +02:00
Gong Qijian 1966d58b25 ob-python: Insert blank line when sending code to interpreter
* lisp/ob-python.el (org-bable-python-evaluate-session):

Syntax error occurs when evaluating the following code block:

\#+begin_src python :session
if True:
    1
2
\#+end_src

A blank line is required for top level module code to end an indented block, such as a for loop, try/except, or if statement.

https://www.python.org/dev/peps/pep-0008/#blank-line

TINYCHANGE
2018-04-03 21:24:18 +02:00
Tim Landscheidt b289a65be7 Use https for links to orgmode.org
TINYCHANGE
2018-01-19 18:14:58 +01:00
Kyle Meyer 3e1641ef0a Update copyright years 2018-01-07 00:27:54 -05:00
Jack Kamm b506bb68d0 ob-python: Fix :session :results output multiline behavior
* lisp/ob-python.el (orb-babel-python-evaluate-session): When :session
:results output, send multiline code blocks to tmpfile and execute in
Python with exec().
(org-babel-python--exec-tmpfile): New variable.
* testing/lisp/test-ob-python.el (test-ob-python/session-multiline):
Test for :session with multiple lines and indentation.
2017-12-18 23:59:04 -05:00
Paul Eggert ff0dcf52a5 Backport commit bc511a64f from Emacs
Prefer HTTPS to FTP and HTTP in documentation
bc511a64f6da9ab51acc7c8865e80c4a4cb655c2
Paul Eggert
Wed Sep 13 15:54:37 2017 -0700
2017-09-17 00:28:38 -04:00
Nathaniel Nicandro e527e49c38 ob-python: Honor the :python header argument in python src blocks
* lisp/ob-python.el (org-babel-execute:python):
`org-babel-python-command` should be set before calling
`org-babel-python-initiate-session`.

TINYCHANGE
2017-04-29 16:26:33 +02:00
Kyle Meyer 713f785017 Update copyright years 2017-01-05 20:19:37 -05:00
Aaron Ecay 140aacbf2f Use ‘eq’ instead of ‘equal’ for symbols
* lisp/ob-C.el (org-babel-C-val-to-C-type):
* lisp/ob-core.el (org-babel-get-colnames):
(org-babel-disassemble-tables):
* lisp/ob-lua.el (org-babel-lua-var-to-lua):
(org-babel-lua-table-or-string):
* lisp/ob-python.el (org-babel-python-var-to-python):
(org-babel-python-table-or-string):
* lisp/ob-ruby.el (org-babel-ruby-var-to-ruby):
(org-babel-ruby-table-or-string):
* lisp/ob-shell.el (org-babel-sh-var-to-string):
* lisp/ob-sqlite.el (org-babel-sqlite-table-or-scalar):
* lisp/org-agenda.el (org-agenda-prepare-window):
(org-compile-prefix-format):
* lisp/org-bibtex.el (org-bibtex-headline):
* lisp/org-capture.el (org-capture):
* lisp/org-colview.el (org-columns-next-allowed-value):
* lisp/org-mhe.el (org-mhe-store-link):
(org-mhe-get-message-real-folder):
(org-mhe-get-message-folder):
(org-mhe-get-message-num):
(org-mhe-get-header):
(org-mhe-follow-link):
* lisp/org-table.el (org-define-lookup-function):
* lisp/org.el (format-spec):
* lisp/ox-odt.el (org-odt--translate-description-lists):
* lisp/ox-publish.el (org-publish-compare-directory-files):
Use `eq' instead of `equal' when comparing to symbols.
* lisp/org-timer.el (org-timer-set-mode-line):
* lisp/org-capture.el (org-capture-finalize):
Use `cl-case' instead of `(cond ((eq x 'foo) ...) ...)'.
2016-09-25 16:29:06 +01:00
Aaron Ecay 79650ffbbd Use assq instead of assoc for :keywords
* lisp/ob-C.el (org-babel-C-execute):
* lisp/ob-J.el (org-babel-execute:J):
* lisp/ob-R.el (org-babel-edit-prep:R):
(org-babel-expand-body:R):
(org-babel-execute:R):
(org-babel-variable-assignments:R):
(org-babel-R-initiate-session):
* lisp/ob-abc.el (org-babel-execute:abc):
* lisp/ob-asymptote.el (org-babel-execute:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-clojure.el (org-babel-expand-body:clojure):
(org-babel-execute:clojure):
* lisp/ob-core.el (org-babel-expand-body:generic):
(org-babel-load-in-session):
(org-babel-initiate-session):
(org-babel-open-src-block-result):
(org-babel-process-params):
(org-babel-insert-result):
(org-babel-expand-noweb-references):
* lisp/ob-ditaa.el (org-babel-execute:ditaa):
* lisp/ob-dot.el (org-babel-execute:dot):
* lisp/ob-ebnf.el (org-babel-execute:ebnf):
* lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp):
(org-babel-execute:emacs-lisp):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
(org-babel-exp-do-export):
(org-babel-exp-code):
* lisp/ob-forth.el (org-babel-execute:forth):
* lisp/ob-fortran.el (org-babel-execute:fortran):
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars):
(org-babel-expand-body:gnuplot):
(org-babel-execute:gnuplot):
* lisp/ob-groovy.el (org-babel-execute:groovy):
* lisp/ob-haskell.el (org-babel-execute:haskell):
* lisp/ob-io.el (org-babel-execute:io):
* lisp/ob-java.el (org-babel-execute:java):
* lisp/ob-js.el (org-babel-execute:js):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/ob-ledger.el (org-babel-execute:ledger):
* lisp/ob-lilypond.el (org-babel-lilypond-process-basic):
* lisp/ob-lisp.el (org-babel-expand-body:lisp):
(org-babel-execute:lisp):
* lisp/ob-lua.el (org-babel-execute:lua):
* lisp/ob-maxima.el (org-babel-execute:maxima):
* lisp/ob-mscgen.el (org-babel-execute:mscgen):
* lisp/ob-ocaml.el (org-babel-execute:ocaml):
* lisp/ob-octave.el (org-babel-execute:octave):
* lisp/ob-org.el (org-babel-execute:org):
* lisp/ob-perl.el (org-babel-execute:perl):
* lisp/ob-picolisp.el (org-babel-execute:picolisp):
* lisp/ob-plantuml.el (org-babel-execute:plantuml):
* lisp/ob-python.el (org-babel-execute:python):
* lisp/ob-ruby.el (org-babel-execute:ruby):
* lisp/ob-sass.el (org-babel-execute:sass):
* lisp/ob-scala.el (org-babel-execute:scala):
* lisp/ob-scheme.el (org-babel-execute:scheme):
* lisp/ob-screen.el (org-babel-execute:screen):
(org-babel-prep-session:screen):
* lisp/ob-shell.el (org-babel-execute:shell):
(org-babel-variable-assignments:shell):
(org-babel-sh-evaluate):
* lisp/ob-shen.el (org-babel-execute:shen):
* lisp/ob-sql.el (org-babel-execute:sql):
* lisp/ob-sqlite.el (org-babel-execute:sqlite):
* lisp/ob-tangle.el (org-babel-tangle):
(org-babel-tangle-single-block):
* lisp/org-src.el (org-src-associate-babel-session):
* lisp/org.el (org-next-link):
Use `assq' instead of `assoc' with :keyword keys.
2016-09-23 11:20:09 +01:00
Aaron Ecay 6b52bc6a21 Clean up string handling.
* lisp/org-compat.el (string-prefix-p, string-suffix-p):
Add compatibility definitions for 24.3.

* lisp/ob-R.el (org-babel-edit-prep:R):
* lisp/ob-core.el (org-babel-demarcate-block):
* lisp/ob-js.el (org-babel-js-read):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/ob-ref.el (org-babel-ref-parse):
* lisp/ob-shell.el (org-babel-variable-assignments:shell):
* lisp/org-protocol.el (org-protocol-create):
* lisp/org-table.el (org-table-field-info):
* lisp/org.el (org-get-buffer-for-internal-link):
* lisp/ox-publish.el (org-publish-compare-directory-files):
* lisp/ox-texinfo.el (org-texinfo-template):
Use `string-{suffix,prefix}-p' instead of `string-match(-p)'.

* lisp/ob-python.el (org-babel-python-read-string):
Ditto, also use `substring' rather than `match-string'.

* lisp/org-table.el (org-table-copy-down):
(org-table-insert-hline, org-table-current-field-formula):
(org-table-get-formula): Use `string-match-p' instead of
`string-match'.
2016-08-24 16:05:54 +01:00
Nicolas Goaziou c4da20a2f3 Silence byte-compiler
* lisp/ob-core.el (org-babel-process-params): Silence byte-compiler.
* lisp/ob-groovy.el (org-babel-groovy-evaluate):
* lisp/ob-haskell.el (org-babel-execute:haskell):
* lisp/ob-io.el (org-babel-io-evaluate):
* lisp/ob-octave.el (org-babel-octave-evaluate-external-process):
(org-babel-octave-evaluate-session):
* lisp/ob-perl.el (org-babel-perl-evaluate):
* lisp/ob-python.el (org-babel-python-evaluate-external-process):
(org-babel-python-evaluate-session):
* lisp/ob-ruby.el (org-babel-ruby-pp-wrapper-method):
(org-babel-ruby-evaluate):
* lisp/ob-scala.el:
* lisp/ob-tangle.el:
(org-babel-tangle-collect-blocks):
* lisp/org-agenda.el (org-agenda-get-category-icon):
(org-agenda-todo-yesterday):
* lisp/org-bbdb.el (org-bbdb-anniv-extract-date):
(org-bbdb-make-anniv-hash):
(org-bbdb-anniversaries-future):
* lisp/org-bibtex.el (org-bibtex-fleshout):
(org-bibtex-read):
(org-bibtex-write):
* lisp/org-capture.el (org-capture-set-target-location):
(org-capture-get-indirect-buffer):
(org-mks):
* lisp/org-clock.el (org-clock--oldest-date):
(org-clock-resolve):
(org-clock-sum):
(org-clock-special-range):
(org-clocktable-steps):
* lisp/org-ctags.el (org-ctags-create-tags):
* lisp/org-element.el (org-element--interpret-affiliated-keywords):
(org-element--cache-shift-positions):
(org-element--cache-sync):
(org-element--cache-submit-request):
* lisp/org-habit.el (org-habit-parse-todo):
* lisp/org-inlinetask.el (org-inlinetask-hide-tasks):
* lisp/org-lint.el (org-lint--generate-reports):
* lisp/org-mouse.el (org-mouse-get-context):
* lisp/org-plot.el (org-plot/gnuplot-to-grid-data):
(org-plot/gnuplot):
* lisp/ox-ascii.el (org-ascii--current-text-width):
(org-ascii--current-justification):
(org-ascii--build-caption):
(org-ascii--checkbox):
(org-ascii-item):
* lisp/ox-html.el (org-html-footnote-section):
* lisp/ox-latex.el (org-latex--make-option-string):
* lisp/ox-odt.el (org-odt-toc):
(org-odt-add-automatic-style):
(org-odt-format-label):
(org-odt-link--inline-image):
(org-odt--render-image/formula):
(org-odt--enumerable-image-p):
(org-odt--enumerable-latex-image-p):
(org-odt--enumerable-formula-p):
(org-odt-do-format-code):
(org-odt-table-cell): Silence byte-compiler.
2016-07-25 17:10:53 +02:00
Nicolas Goaziou e7f2379297 Remove unnecessary (require 'cl) 2016-07-25 15:41:02 +02:00
Nicolas Goaziou 4f63cfabb3 Deprecate `org-babel-trim' in favor of `org-trim'
* lisp/org.el (org-trim): Add optional argument.

* contrib/lisp/ob-mathematica.el (org-babel-execute:mathematica):
* contrib/lisp/org-bibtex-extras.el (obe-html-export-citations):
* contrib/lisp/org-mime.el (org-mime-compose):
* lisp/ob-C.el (org-babel-C-execute):
* lisp/ob-calc.el (org-babel-execute:calc):
* lisp/ob-clojure.el (org-babel-expand-body:clojure):
* lisp/ob-core.el (org-babel-initiate-session):
(org-babel-parse-multiple-vars):
(org-babel-read-element):
(org-babel-insert-result):
(org-babel-expand-noweb-references):
(org-babel-trim): Mark obsolete.
* lisp/ob-forth.el (org-babel-forth-session-execute):
* lisp/ob-fortran.el (org-babel-execute:fortran):
* lisp/ob-haskell.el (org-babel-execute:haskell):
* lisp/ob-latex.el (org-babel-expand-body:latex):
* lisp/ob-lisp.el (org-babel-expand-body:lisp):
* lisp/ob-ocaml.el (org-babel-execute:ocaml):
* lisp/ob-octave.el (org-babel-octave-evaluate-session):
* lisp/ob-python.el (org-babel-python-evaluate-external-process):
(org-babel-python-evaluate-session):
* lisp/ob-ref.el (org-babel-ref-split-args):
* lisp/ob-ruby.el (org-babel-ruby-evaluate):
* lisp/ob-shell.el (org-babel-sh-evaluate):
* lisp/ob-table.el (org-sbe):
* lisp/ob-tangle.el (org-babel-spec-to-string):
* lisp/org-bibtex.el (org-bibtex-get):
* testing/lisp/test-ob.el (test-ob/parse-header-args): Use `org-trim'
  instead of `org-babel-trim'.
2016-06-21 15:33:00 +02:00
Nicolas Goaziou 4129ae6737 Remove some XEmacs compatibility layer
* lisp/ob-calc.el (calc-trail):
* lisp/ob-python.el (org-babel-python-mode):
* lisp/org-agenda.el (org-agenda-tags-column):
(org-agenda-show-new-time):
* lisp/org-clock.el (org-clock-update-mode-line):
(org-clock-put-overlay):
(org-clock-resolve):
* lisp/org-faces.el (org-faces):
* lisp/org-indent.el (org-indent-mode):
* lisp/org-macs.el (org-load-noerror-mustsuffix):
* lisp/org-table.el (orgtbl-setup):
* lisp/org.el (org-key):
(org-self-insert-cluster-for-undo):
(org-tags-column):
(org-emphasis-alist):
(org-mode):
(org-set-font-lock-defaults):
(org-cycle-internal-local):
(org-tree-to-indirect-buffer):
(org-set-frame-title):
(org-priority):
(org-set-tags):
(org-set-current-tags-overlay):
(org-toggle-time-stamp-overlays):
(org-display-custom-time):
(org-diary-to-ical-string):
(org--format-latex-make-overlay):
(org-dvipng-color):
(org-latex-color):
(org-mode-map):
(org-speed-commands-default):
(org-reload):
(org-display-warning):
(org-end-of-line):
* lisp/ox-man.el (org-man-inline-src-block):
* contrib/lisp/org-vm.el (org-vm-follow-link):
* contrib/lisp/ox-groff.el (org-groff-inline-src-block):
(org-groff-src-block): Remove some XEmacs compatibility layer.
2016-05-26 11:30:11 +02:00
Kyle Meyer 4925d5be7b Merge branch 'maint' 2016-05-15 19:00:30 -04:00
Paul Eggert 1f046ea4b1 Backport commit 65c8c7c from Emacs
* lisp/ob-awk.el (orgtbl-to-generic):
* lisp/ob-core.el (orgtbl-to-generic):
* lisp/ob-exp.el (org-element-context):
* lisp/ob-gnuplot.el (org-time-string-to-time)
(orgtbl-to-generic):
* lisp/ob-haskell.el (org-export-to-file):
* lisp/ob-latex.el (org-create-formula-image)
(org-latex-compile):
* lisp/ob-python.el (run-python):
* lisp/ob-tangle.el (org-link-escape, org-back-to-heading):
* lisp/org-colview.el (org-agenda-redo):
* lisp/org-feed.el (url-retrieve-synchronously):
* lisp/org-info.el (Info-find-node):
* lisp/org-list.el (org-previous-line-empty-p):
* lisp/org-macs.el (org-string-match-p):
* lisp/org.el (org-beamer-mode):
Fix prototype to match current definition.
* lisp/ob-comint.el (tramp-flush-directory-property):
* lisp/ob-tangle.el (org-babel-update-block-body):
* lisp/org-bibtex.el (org-babel-trim):
* lisp/org-pcomplete.el (org-export-backend-options):
* lisp/org-protocol.el (org-publish-get-project-from-filename):
Fix file name in declare-function.
* lisp/ob-comint.el (with-parsed-tramp-file-name)
* lisp/ob-core.el (with-parsed-tramp-file-name):
* lisp/org.el (org-beamer-mode):
Append ‘t’ to declare-function, since the declaration isn’t a defun.
* lisp/ob-core.el (org-save-outline-visibility):
Remove; not needed.
* lisp/ob-scheme.el (run-geiser, geiser-mode)
(geiser-eval-region, geiser-repl-exit):
* lisp/ox-org.el (htmlize-buffer):
Prepend "ext:" to file name, since it is not part of Emacs.
* lisp/org-gnus.el (nnimap-group-overview-filename):
Remove decl, since function was removed.
* lisp/org-macro.el (org-with-wide-buffer):
Omit unnecessary (and mismatching) decl.
* lisp/org-clock.el (calendar-iso-to-absolute):
Declare calendar-iso-to-absolute instead, since it is the
non-obsolete version of this function.
* lisp/org-compat.el (w32-focus-frame):
Remove decl, since function is now obsolete.

Pacify ‘make check-declare’
65c8c7cb96c14f9c6accd03cc8851b5a3459049e
Paul Eggert
Sat May 14 19:57:44 2016 -0700
2016-05-15 18:59:16 -04:00
Kyle Meyer 6345de2d05 Merge branch 'maint' 2016-01-09 17:43:27 -05:00
Kyle Meyer 6bc48c5f41 Update copyright years 2016-01-09 17:12:03 -05:00
Aaron Ecay 0d000f5680 babel: small change in API.
* lisp/ob-core.el (org-babel--get-vars): New function.
(org-babel-get-header): Delete.
* lisp/ob-C.el (org-babel-C-expand-C):
(org-babel-C-expand-D):
* lisp/ob-R.el (org-babel-variable-assignments:R):
* lisp/ob-abc.el (org-babel-expand-body:abc):
* lisp/ob-asymptote.el (org-babel-variable-assignments:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-calc.el (org-babel-execute:calc):
* lisp/ob-clojure.el (org-babel-expand-body:clojure):
* lisp/ob-dot.el (org-babel-expand-body:dot):
* lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp):
* lisp/ob-fortran.el (org-babel-expand-body:fortran):
(org-babel-fortran-ensure-main-wrap):
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars):
* lisp/ob-haskell.el (org-babel-variable-assignments:haskell):
* lisp/ob-js.el (org-babel-variable-assignments:js):
* lisp/ob-latex.el (org-babel-expand-body:latex):
* lisp/ob-lilypond.el (org-babel-expand-body:lilypond):
* lisp/ob-lisp.el (org-babel-expand-body:lisp):
* lisp/ob-maxima.el (org-babel-maxima-expand):
* lisp/ob-ocaml.el (org-babel-variable-assignments:ocaml):
* lisp/ob-octave.el (org-babel-variable-assignments:octave):
* lisp/ob-org.el (org-babel-expand-body:org):
* lisp/ob-perl.el (org-babel-variable-assignments:perl):
* lisp/ob-picolisp.el (org-babel-expand-body:picolisp):
* lisp/ob-processing.el (org-babel-variable-assignments:processing):
* lisp/ob-python.el (org-babel-variable-assignments:python):
* lisp/ob-ruby.el (org-babel-variable-assignments:ruby):
* lisp/ob-scheme.el (org-babel-expand-body:scheme):
* lisp/ob-shell.el (org-babel-variable-assignments:shell):
* lisp/ob-shen.el (org-babel-expand-body:shen):
* lisp/ob-sql.el (org-babel-expand-body:sql):
* lisp/ob-sqlite.el (org-babel-expand-body:sqlite): Adapt to change.
* etc/ORG-NEWS: Document change.
2015-10-29 19:26:11 +00:00
Nicolas Goaziou f0bf77e82a Activate lexical binding in some libraries
* lisp/ob-C.el (org-babel-prep-session:C):
(org-babel-load-session:C):
* lisp/ob-J.el:
(org-babel-expand-body:J):
(org-babel-execute:J):
* lisp/ob-R.el:
(org-babel-expand-body:R):
* lisp/ob-abc.el:
(org-babel-execute:abc):
(org-babel-prep-session:abc):
* lisp/ob-asymptote.el:
(org-babel-execute:asymptote):
(org-babel-prep-session:asymptote):
* lisp/ob-awk.el:
(org-babel-expand-body:awk):
* lisp/ob-calc.el:
(org-babel-expand-body:calc):
* lisp/ob-clojure.el:
* lisp/ob-comint.el:
(org-babel-comint-in-buffer):
(org-babel-comint-with-output):
(org-babel-comint-eval-invisibly-and-wait-for-file):
* lisp/ob-coq.el:
* lisp/ob-css.el:
(org-babel-execute:css):
(org-babel-prep-session:css):
* lisp/ob-ditaa.el:
(org-babel-execute:ditaa):
(org-babel-prep-session:ditaa):
* lisp/ob-dot.el:
(org-babel-execute:dot):
(org-babel-prep-session:dot):
* lisp/ob-ebnf.el:
* lisp/ob-emacs-lisp.el:
* lisp/ob-eval.el:
* lisp/ob-forth.el:
* lisp/ob-fortran.el:
(org-babel-execute:fortran):
(org-babel-prep-session:fortran):
(org-babel-load-session:fortran):
* lisp/ob-gnuplot.el:
(org-babel-expand-body:gnuplot):
(org-babel-prep-session:gnuplot):
(org-babel-gnuplot-initiate-session):
* lisp/ob-groovy.el:
(org-babel-prep-session:groovy):
(org-babel-groovy-initiate-session):
* lisp/ob-haskell.el:
(org-babel-haskell-initiate-session):
* lisp/ob-io.el:
(org-babel-prep-session:io):
(org-babel-io-initiate-session):
* lisp/ob-java.el:
(org-babel-execute:java):
* lisp/ob-js.el:
* lisp/ob-keys.el:
* lisp/ob-latex.el:
(org-babel-prep-session:latex):
* lisp/ob-ledger.el:
(org-babel-execute:ledger):
(org-babel-prep-session:ledger):
* lisp/ob-lilypond.el:
(org-babel-lilypond-commands):
(org-babel-lilypond-process-basic):
(org-babel-prep-session:lilypond):
(org-babel-lilypond-parse-line-num):
* lisp/ob-lisp.el:
* lisp/ob-makefile.el:
(org-babel-execute:makefile):
(org-babel-prep-session:makefile):
* lisp/ob-matlab.el:
* lisp/ob-maxima.el:
(org-babel-prep-session:maxima):
* lisp/ob-mscgen.el:
(org-babel-prep-session:mscgen):
* lisp/ob-ocaml.el:
(org-babel-execute:ocaml):
(org-babel-prep-session:ocaml):
* lisp/ob-octave.el:
(org-babel-execute:octave):
(org-babel-octave-initiate-session):
* lisp/ob-org.el:
(org-babel-prep-session:org):
* lisp/ob-perl.el:
(org-babel-prep-session:perl):
(org-babel-perl--var-to-perl):
(org-babel-perl-initiate-session):
* lisp/ob-picolisp.el:
(org-babel-expand-body:picolisp):
(org-babel-execute:picolisp):
* lisp/ob-plantuml.el:
(org-babel-execute:plantuml):
(org-babel-prep-session:plantuml):
* lisp/ob-processing.el:
(org-babel-prep-session:processing):
* lisp/ob-python.el:
(org-babel-python-initiate-session):
* lisp/ob-ref.el:
(org-babel-ref-resolve):
* lisp/ob-ruby.el:
(org-babel-ruby-initiate-session):
* lisp/ob-sass.el:
(org-babel-execute:sass):
(org-babel-prep-session:sass):
* lisp/ob-scala.el:
(org-babel-execute:scala):
(org-babel-prep-session:scala):
(org-babel-scala-initiate-session):
* lisp/ob-scheme.el:
* lisp/ob-screen.el:
(org-babel-prep-session:screen):
(org-babel-screen-session-write-temp-file):
(org-babel-screen-test):
* lisp/ob.el:
* lisp/org-colview.el:
(org-columns-todo):
(org-columns-set-tags-or-toggle):
(org-columns-new):
(org-columns-uncompile-format):
(org-agenda-colview-summarize):
* lisp/org-footnote.el:
(electric-indent-mode):
* lisp/org-indent.el:
(org-indent-refresh-maybe):
* lisp/org-list.el:
* lisp/org-macro.el:
(org-macro--collect-macros):
* lisp/org-src.el:
* lisp/org-table.el:
(sort-fold-case):
(org-table-create):
(org-table-field-info):
(org-table-transpose-table-at-point):
(org-table-remove-rectangle-highlight):
(orgtbl-create-or-convert-from-region):
(org-define-lookup-function):
* lisp/ox-ascii.el:
(org-ascii-format-drawer-function):
(org-ascii--has-caption-p):
(org-ascii-bold):
(org-ascii-center-block):
(org-ascii-clock):
(org-ascii-code):
(org-ascii-dynamic-block):
(org-ascii-entity):
(org-ascii-example-block):
(org-ascii-export-snippet):
(org-ascii-export-block):
(org-ascii-fixed-width):
(org-ascii-footnote-reference):
(org-ascii-horizontal-rule):
(org-ascii-inline-src-block):
(org-ascii-format-inlinetask-default):
(org-ascii-italic):
(org-ascii-keyword):
(org-ascii-latex-environment):
(org-ascii-latex-fragment):
(org-ascii-line-break):
(org-ascii-node-property):
(org-ascii-planning):
(org-ascii-quote-block):
(org-ascii-radio-target):
(org-ascii-special-block):
(org-ascii-src-block):
(org-ascii-statistics-cookie):
(org-ascii-subscript):
(org-ascii-superscript):
(org-ascii-strike-through):
(org-ascii-timestamp):
(org-ascii-underline):
(org-ascii-verbatim):
(org-ascii-verse-block):
(org-ascii-filter-headline-blank-lines):
(org-ascii-filter-paragraph-spacing):
(org-ascii-filter-comment-spacing): Use lexical binding.
2015-10-26 01:56:00 +01:00
Kyle Meyer 0839dc4322 Protect remaining apostrophes in docstrings
Protect apostrophes not covered by the last backport.  Convert
expressions like '(...)  to \\='(...)  and symbols written as 'name to
`name'.  (In addition to ensuring the correct display, the latter also
improves consistency with many Org docstrings.)

If these aren't protected, Emacs 25 may display them as curved quotes in
the help buffer, depending on the value of text-quoting-style.
2015-09-21 18:38:39 -04:00
Kyle Meyer d77a52a502 Backport quote-related commits from Emacs
These changes are the combination of the commits below (in order
applied).  Unlike other backports, these are applied in one commit
because they are closely related and because some of the later commits
reverse changes in earlier commits.  Changes to message and help quote
display for Emacs 25 seem to be here to stay.  The quote protections are
required to ensure grave accents and apostrophes are displayed as
intended in Emacs 25, and they should not affect earlier versions.

  Quoting fixes in lisp/org
  6cd2629bd1b3ce77d29ac28e29237c94a4197116
  Paul Eggert
  Mon Aug 31 00:29:40 2015 -0700

  More-conservative ‘format’ quote restyling
  fbb5531fa11d13854b274d28ccd329c9b6652cfc
  Paul Eggert
  Sun Aug 23 22:39:06 2015 -0700

  Prefer directed to neutral quotes
  875a5d0ead827d3da32ecbd30e739a29f07bbc87
  Paul Eggert
  Mon Aug 24 23:57:25 2015 -0700

  Escape ` and ' in doc
  19532d147b431a4fe34f088d6de07891c48e2c5c
  Paul Eggert
  Tue Sep 1 18:23:21 2015 -0700

  Fix some more docstring etc. quoting problems
  26bd978d87dfbf9baa115cd961a67d42b416c4bf
  Paul Eggert
  Thu Sep 3 15:32:54 2015 -0700

  Go back to grave quoting in source-code docstrings etc.
  6afef3f6ca2f3009c722b84e249903b7f807b044
  Paul Eggert
  Mon Sep 7 16:09:27 2015 -0700
2015-09-21 18:38:18 -04:00
Nicolas Goaziou 0d24086657 Update some copyright years 2015-02-16 01:40:07 +01:00
Aaron Ecay a0095ce1a7 ob-python: Convert two defvars to defconsts.
* lisp/ob-python.el (org-babel-python-wrapper-method):
(org-babel-python-pp-wrapper-method): Convert from defvar to defconst.
2015-01-22 01:55:23 -05:00
Achim Gratz 5bf928bae7 Merge branch 'maint'
Conflicts:
	lisp/ob-core.el
	lisp/org.el
	lisp/ox.el
2014-05-28 16:23:08 +02:00
Achim Gratz 790f5b4d3a ob-core, ob-exp, ob-haskell, ob-python: declarations for org-src-preserve-indentations
* lisp/ob-core.el: Add comment to forward declaration of
  'org-src-preserve-indentations'.
* lisp/ob-exp.el: Require org-src to import
  'org-src-preserve-indentations'.
* lisp/ob-haskell.el, lisp/ob-python.el: Remove superfluous forward
  declaration of 'org-src-preserve-indentations', since it gets
  imported by other requires.
2014-05-28 14:52:14 +02:00