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169 Commits

Author SHA1 Message Date
Eric Schulte b183da4be6 Babel: fixing compiler warnings 
* lisp/ob-R.el (ess-make-buffer-current): declared
  (ess-ask-for-ess-directory): declared
  (ess-local-process-name): declared
* lisp/ob-latex.el (org-babel-latex-tex-to-pdf): capturing free
  variable
* lisp/ob.el (org-edit-src-code): fixing arguments
  (org-edit-src-exit): declared
  (org-outline-overlay-data): declared
  (org-set-outline-overlay-data): declared
 2010-08-27 14:45:55 -06:00
Glenn Morris e314478511 Fix some more Org `check-declare' issues. 
* ob.el: Require org when compiling.
(org-save-outline-visibility): Remove macro declaration.
* ob-emacs-lisp.el: Require ob-comint when compiling, for macros.
Remove unnecessary/macro declarations.
* org-docview.el: Require doc-view when compiling.
(doc-view-goto-page): Autoload rather than declaring.
(doc-view-current-page): Remove macro declaration.
* ob.el (tramp-compat-make-temp-file, org-edit-src-code)
(org-entry-get, org-table-import): Fix declarations.
(org-match-string-no-properties): Remove declaration.
* ob-sh.el (org-babel-comint-in-buffer)
(org-babel-comint-wait-for-output, org-babel-comint-buffer-livep)
(org-babel-comint-with-output): Remove unnecessary declarations.
* ob-R.el (orgtbl-to-tsv): Fix declaration.
* org-list.el (org-entry-get): Fix declaration.
 2010-08-27 14:45:48 -06:00
Eric Schulte 7b00073f2d Babel now cleans up any temporary files created using org-babel-temp-file 
* lisp/ob.el (org-babel-temporary-directory): variable to hold the
  value of the Babel temporary directory

  (org-babel-temp-file): replacement for make-temp-file with cleanup
  on exit of Emacs

  (org-babel-remove-temporary-directory): cleanup function run on exit
  of Emacs

  (kill-emacs-hook): now includes babel cleanup function

* lisp/ob-C.el (org-babel-C-execute): using org-babel-temp-file
  instead of make-temp-file

* lisp/ob-R.el (org-babel-R-assign-elisp): using `org-babel-temp-file'
  instead of `make-temp-file'

  (org-babel-R-evaluate-external-process): using `org-babel-temp-file'
  instead of `make-temp-file'

  (org-babel-R-evaluate-session): using `org-babel-temp-file' instead of
  `make-temp-file'

* lisp/ob-asymptote.el (org-babel-execute:asymptote): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-clojure.el (org-babel-clojure-evaluate-external-process):
  using `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-ditaa.el (org-babel-execute:ditaa): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-dot.el (org-babel-execute:dot): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): using
  `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-execute:gnuplot): using `org-babel-temp-file' instead of
  `make-temp-file'

* lisp/ob-haskell.el (org-babel-load-session:haskell): using
  `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-haskell-export-to-lhs): using `org-babel-temp-file' instead
  of `make-temp-file'

* lisp/ob-latex.el (org-babel-execute:latex): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-ledger.el (org-babel-execute:ledger): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-lisp.el (org-babel-execute:lisp): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-octave.el (org-babel-octave-evaluate-external-process):
  using `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-octave-evaluate-session): using `org-babel-temp-file'
  instead of `make-temp-file'

  (org-babel-octave-import-elisp-from-file): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-perl.el (org-babel-perl-evaluate): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-python.el (org-babel-python-evaluate): using
  `org-babel-temp-file' instead of `make-temp-file'
  using `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-ruby.el (org-babel-ruby-evaluate): using
  `org-babel-temp-file' instead of `make-temp-file'
  using `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-sass.el (org-babel-execute:sass): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-sh.el (org-babel-sh-evaluate): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-sql.el (org-babel-execute:sql): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-sqlite.el (org-babel-execute:sqlite): using
  `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-sqlite-expand-vars): using `org-babel-temp-file' instead of
   `make-temp-file'
 2010-08-25 14:47:47 -06:00
Erik Iverson 1d1439f91e babel: R: Respect value of `ess-ask-for-ess-directory' 2010-08-23 23:06:55 -04:00
Dan Davison bf64d25744 babel: R: Refactor evaluation code 
* ob-R.el (org-babel-R-evaluate): Break the two branches into
    two separate functions
    (org-babel-R-evaluate-external-process): New function to
    handle external process evaluation
    (org-babel-R-evaluate-session): New function to handle session
    evaluation
 2010-08-18 20:20:54 -04:00
Dan Davison a4c8bcd31b babel: implement association of R code buffers with R session 
* ob-R.el (org-babel-R-associate-session): New function
    to associate R code edit buffers with ESS comint session.
 2010-08-17 17:32:23 -04:00
Dan Davison 5122aee4a7 babel: R: Specify that tables are tab-delimited 
2010-08-03  Dan Davison  <davison@stats.ox.ac.uk>

	* ob-R.el (org-babel-R-evaluate): Specify that tabular data is
	tab-delimited

Prior to this we had

 #+begin_src R
  c("some words", "with spaces")
 #+end_src

 #+results:
 | some | words  |
 | with | spaces |
 2010-08-03 00:14:56 -04:00
Eric Schulte dc92eaa08d ob-R: improved prompt-stripping regexp thanks to Charles C. Berry 
* lisp/ob-R.el (org-babel-R-evaluate): improved prompt-stripping
  regexp
 2010-07-28 08:05:30 -06:00
Eric Schulte 24bb01afc8 ob-R: clean up extra prompts in session output 
Thanks to Charles C. Berry for pointing this issue out

* lisp/ob-R.el (org-babel-R-evaluate): clean up extra prompts in
  session output
 2010-07-27 12:20:00 -06:00
Carsten Dominik 6268cceec3 Mention release 7.01 on the website, push release number to 7.01trans 2010-07-19 08:33:24 +02:00
Tom Dye 333526b8aa Wondering if error messages ought to be standardized? 2010-07-13 15:56:17 -07:00
Eric Schulte c53fc7d246 babel: consolidate execution messaging into ob.el 
* lisp/ob.el (org-babel-execute-src-block): consolidate execution
  messaging into ob.el rather than spread out amongst all the language
  files
 2010-07-12 22:26:25 -07:00
Eric Schulte 0a109680ee fixed list nesting error in ob-R.el 2010-07-05 11:14:51 -07:00
Eric Schulte baa6e1d3d7 babel: absolutely no babel related compiler warnings 
had to nest an argument in a trivial `or' to trick the compiler in
  the large ob-comint macro.
 2010-07-05 11:14:51 -07:00
Eric Schulte 3416a0e323 babel: clean compile 2010-07-05 11:14:51 -07:00
Eric Schulte d1ba364572 babel: cleaned up R code 2010-07-05 11:14:50 -07:00
Eric Schulte 15b36e2380 ext: prefix on external file names 2010-07-05 11:14:50 -07:00
Eric Schulte 6c2e35003f babel: all languages compiling cleanly (but R has a small problem) 
For some reason ob-R refuses to compile when it requires ob-comint.

  When (require 'ob-comint) is not included in  ob-R.el everything
  compiles without error, but warnings are thrown because the
  arguments to a macro defined in ob-comint are mis-interpreted as
  functions.

  When (require 'ob-comint) is added to ob-R.el then it throws errors
  complaining that the last argument to a function is nil and should
  be a string.  I don't understand this error at all and can't fix it.
 2010-07-05 11:14:50 -07:00
Eric Schulte d7b7025eac flattening out lisp directory structure 
all babel and babel/langs files now live in the base of the lisp directory.
 2010-07-05 11:14:49 -07:00