Commit Graph

117 Commits

Author SHA1 Message Date
Eric Schulte cd3bc12a29 named and caching call lines working
* lisp/ob-core.el (org-babel-current-result-hash): Additional info
  argument so that named call line results may be found.
  (org-babel-set-current-result-hash): Additional info argument so
  that named call line results may be found.
* lisp/ob-lob.el (org-babel-lob-execute): Passing info to hash finding
  functions so that named results may be found.
2014-01-18 13:40:57 -07:00
Nicolas Goaziou b8028c607d Merge branch 'maint' 2014-01-09 21:37:11 +01:00
Nicolas Goaziou 81ce406d8f ob-core: Speed improvement
* lisp/ob-core.el (org-babel-get-inline-src-block-matches): Do not
  compute line number if all is needed is to know if we're on the
  first one.
2014-01-09 21:36:25 +01:00
Bastien Guerry f8e1745440 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-07 14:19:03 +01:00
Bastien Guerry 7d9a883b50 Update copyright years again.
Hint: copyright years are all updated in Emacs.
2014-01-07 14:18:17 +01:00
Bastien Guerry c41f5075ac Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-05 06:36:11 +01:00
Bastien Guerry 0beda99171 Revert "Update copyright years."
This reverts commit 21105594fc.
2014-01-05 06:28:07 +01:00
Bastien Guerry 096ff7e078 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-04 18:58:12 +01:00
Bastien Guerry 21105594fc Update copyright years. 2014-01-04 18:56:11 +01:00
Eric Schulte ea993c6d8c fixed insertion of results with hashes
No longer overwrites intervening #+ lines.

* lisp/ob-core.el (org-babel-where-is-src-block-result): Fixed
  insertion of results with hashes.
2013-12-13 15:06:06 -07:00
Eric Schulte 031d2565f7 don't change code block body during sha1 hashing
* lisp/ob-core.el (org-babel-sha1-hash): Don't change code block body
  during sha1 hashing.
2013-12-10 11:11:27 -07:00
Eric Schulte ed64845fd6 fix bug introduced by e6a6fed
* lisp/ob-core.el (org-babel-sha1-hash): Don't reference non-existent
  params variable.
2013-12-10 11:00:29 -07:00
Eric Schulte e6a6fed934 expanded noweb references when calculating hashes
The bulk of the new code in org-babel-sha1-hash is borrowed from
org-babel-expand-src-block.

* lisp/ob-core.el (org-babel-sha1-hash): Expanded noweb references
  when calculating hashes.
2013-12-10 00:36:16 -07:00
Bastien Guerry 487c74580c Fix bug when commenting source code.
* org.el (org-babel-do-in-edit-buffer): Declare.
(org-babel-load-file, org-insert-comment)
(org-comment-or-uncomment-region): Don't require 'ob-core.
(org-mode-map): Remap `comment-dwim' to `org-comment-dwim'.
(org-comment-dwim): New command.

* ob-core.el (org-babel-do-in-edit-buffer): Make an autoload.

See http://lists.gnu.org/archive/html/emacs-devel/2013-12/msg00154.html
for a discussion about this bug.
2013-12-06 10:45:35 +01:00
Eric Schulte 8c98879d7c declare function to appease compiler
* lisp/ob-C.el (org-remove-indentation): Declare function to appease
  compiler.
* lisp/ob-core.el (org-remove-indentation): Declare function to
  appease compiler.
* lisp/ob-fortran.el (org-remove-indentation): Declare function to
  appease compiler.
2013-11-23 17:02:22 -07:00
Eric Schulte 39070b7fc7 sometimes remove common indentation when trimming
* lisp/ob-C.el (org-babel-C-execute): Remove common indentation when
  trimming.

* lisp/ob-core.el (org-babel-read-result): Remove common indentation
  when trimming.
  (org-babel-update-block-body): Remove common indentation when
  trimming.

* lisp/ob-fortran.el (org-babel-execute:fortran): Remove common
  indentation when trimming.

* lisp/ob-tangle.el (org-babel-process-comment-text): Better default
  to process tangled comments.
2013-11-23 15:57:29 -07:00
Eric Schulte 89a35bc147 inline src block parser set "switches" in info
* lisp/ob-core.el (org-babel-parse-inline-src-block-match): Inline src
  block parser set "switches" in info, otherwise later offset are broken.
2013-11-22 08:28:29 -07:00
Eric Schulte bbcf17b969 set location info parameter for inline src blocks
* lisp/ob-core.el (org-babel-execute-src-block): Set location info
  parameter for inline src blocks.
  (org-babel-get-src-block-info): Set location info parameter for
  inline src blocks.
2013-11-22 08:28:29 -07:00
Eric Schulte 060d79f080 whitespace fixes 2013-11-22 08:28:29 -07:00
Bastien Guerry 9214000c21 Merge branch 'maint'
Conflicts:
	doc/org.texi
2013-11-17 09:17:39 +01:00
Bastien Guerry a6210cc9c2 Backport Paul's fixes from Emacs trunk (1/2)
See http://article.gmane.org/gmane.emacs.diffs/123123
2013-11-17 09:12:41 +01:00
Eric Schulte d840b84bbc Don't skip call lines searching for results
This fixes a bug noticed by Rick Frankel in which two subsequent
  #+call: lines will both update the same results.  Before this commit
  both of the following call lines would update the same result.

      #+name: call-me
      #+BEGIN_SRC emacs-lisp :var v="nil"
      v
      #+END_SRC

      #+call: call-me("one")

      #+call: call-me(v="two")

      #+RESULTS:
      : one

  Now both lines are given their own result.

      #+name: call-me
      #+BEGIN_SRC emacs-lisp :var v="nil"
      v
      #+END_SRC

      #+call: call-me("one")

      #+RESULTS:
      : one

      #+call: call-me(v="two")

      #+RESULTS:
      : two
2013-11-13 21:13:11 -07:00
Eric Schulte c67e3cda15 default to preserving hlines in call lines
* lisp/ob-core.el (org-babel-default-inline-header-args):
  Added (:hlines "yes") to the default value.
2013-11-13 21:13:11 -07:00
Bastien Guerry 487057fc26 Fix conflicts from previous merge 2013-11-12 21:11:23 +01:00
Bastien Guerry 71884cc039 Merge branch 'maint'
Conflicts:
	lisp/ob-C.el
	lisp/ob-clojure.el
	lisp/ob-core.el
	lisp/ob-lisp.el
	lisp/org-clock.el
2013-11-12 21:00:49 +01:00
Bastien Guerry f95641c443 Backport changes from Emacs revs 115081 and 115082
2013-11-12  Stefan Monnier  <monnier@iro.umontreal.ca>

	Address some byte-compiler warnings.
	* ob-abc.el (org-babel-expand-body:abc): Use dolist.
	(org-babel-execute:abc): Fix regexp quoting.
	* ob-calc.el (org--var-syms): Rename from `var-syms'.
	* ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding.
	* ob-table.el (sbe): Move debug declaration.
	* org-clock.el (org--msg-extra): Rename from `msg-extra'.
	* org.el (org-version): Avoid var name starting with _.
	(org-inhibit-startup, org-called-with-limited-levels)
	(org-link-search-inhibit-query, org-time-was-given)
	(org-end-time-was-given, org-def, org-defdecode, org-with-time):
	* org-colview.el (org-agenda-overriding-columns-format):
	* org-agenda.el (org-agenda-multi, org-depend-tag-blocked)
	(org-agenda-show-log-scoped):
	* ob-python.el (py-which-bufname, python-shell-buffer-name):
	* ob-haskell.el (org-export-copy-to-kill-ring):
	* ob-exp.el (org-link-search-inhibit-query):
	* ob-R.el (ess-eval-visibly-p):
	* ob-core.el (org-src-window-setup): Declare before use.
	(org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'.
	* ox-odt.el (org-odt-hfy-face-to-css):
	* org-src.el (org-src-associate-babel-session, org-src-get-lang-mode):
	* org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex)
	(org-bibtex-check):
	* ob-tangle.el (org-babel-tangle, org-babel-spec-to-string)
	(org-babel-tangle-single-block, org-babel-tangle-comment-links):
	* ob-table.el (sbe):
	* ob-sqlite.el (org-babel-sqlite-expand-vars):
	* ob-sql.el (org-babel-sql-expand-vars):
	* ob-shen.el (org-babel-execute:shen):
	* ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate):
	* ob-scala.el (org-babel-scala-evaluate):
	* ob-ruby.el (org-babel-ruby-table-or-string)
	(org-babel-ruby-evaluate):
	* ob-python.el (org-babel-python-table-or-string)
	(org-babel-python-evaluate-external-process)
	(org-babel-python-evaluate-session):
	* ob-picolisp.el (org-babel-execute:picolisp):
	* ob-perl.el (org-babel-perl-evaluate):
	* ob-maxima.el (org-babel-execute:maxima):
	* ob-lisp.el (org-babel-execute:lisp):
	* ob-java.el (org-babel-execute:java):
	* ob-io.el (org-babel-io-evaluate):
	* ob-haskell.el (org-babel-execute:haskell):
	* ob-fortran.el (org-babel-execute:fortran):
	* ob-exp.el (org-babel-exp-code):
	* ob-emacs-lisp.el (org-babel-execute:emacs-lisp):
	* ob-ditaa.el (org-babel-execute:ditaa):
	* ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash)
	(org-babel-parse-header-arguments, org-babel-reassemble-table)
	(org-babel-goto-src-block-head, org-babel-mark-block)
	(org-babel-expand-noweb-references, org-babel-script-escape)
	(org-babel-process-file-name):
	* ob-clojure.el (org-babel-execute:clojure):
	* ob-calc.el (org-babel-execute:calc):
	* ob-awk.el (org-babel-execute:awk):
	* ob-abc.el (org-babel-execute:abc):
	* ob-R.el (org-babel-expand-body:R):
	* ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...).

2013-11-12  Glenn Morris  <rgm@gnu.org>

	* ox-html.el (org-html-scripts): Add 2013 to copyright years.
	(org-html-infojs-template): Copyright holder to FSF.
2013-11-12 20:57:31 +01:00
Eric Schulte ac9d8012a4 fix compiler issues w/safe-header-args
* lisp/ob-core.el (org-every): Declared function for compiler.
  (org-babel-safe-header-args): Moved before first use.
  (org-babel-header-args-safe-fn): Moved before first use.
2013-10-30 11:58:50 -06:00
Aaron Ecay cba8718eac Mark some org-babel variables as safe locals under proper conditions
* lisp/ob-core.el (org-babel-inline-result-wrap,
org-babel-default-header-args,
org-babel-default-inline-header-args): mark as safe local variables
2013-10-30 11:23:34 -06:00
Eric Schulte 2eef1b4549 call org-confirm-babel-evaluate from code block
Always call org-confirm-babel-evaluate from the head of the code
  block being evaluated so that the info may be found with
  e.g., (org-babel-get-src-block-info 'light)

* lisp/ob-core.el (org-babel-check-confirm-evaluate): Call
  org-confirm-babel-evaluate from code block head.
2013-10-14 07:23:39 -06:00
Eric Schulte 5afd5d9785 optional arguments to org-babel-insert-header-arg
* lisp/ob-core.el (org-babel-insert-header-arg): Optional arguments
  for usage from Emacs Lisp programs.  In addition this function will
  now insert header arguments in the correct place instead of at the
  current point.
2013-10-06 09:07:42 -06:00
Eric Schulte 01467ae083 remove leading newline when removing a result
This fixes a number of new test failures

* lisp/ob-core.el (org-babel-remove-result): Remove leading newline
  when removing a result.
2013-10-01 06:25:31 -06:00
Michael Albinus 89f10a11fb * ob-core.el (org-babel-local-file-name): Simplify. (org-babel-process-file-name): Apply `expand-file-name' first. (org-babel-remote-temporary-directory): New defcustom. (org-babel-temp-file): Use it. 2013-09-28 05:37:45 -06:00
Eric Schulte d089170905 named results when keeping keyword of rm'd results
* lisp/ob-core.el (org-babel-remove-result): Fix recent keep-keyword
  option to include named result blocks as well.
2013-09-20 16:29:10 -06:00
Eric Schulte 136bdc0e83 org-babel-remove-result option keep result keyword
This patch is based off of a request and an initial patch supplied by
Daniele Pizzolli.

* lisp/ob-core.el (org-babel-remove-result): Added an option to keep
  the results keyword when removing the content of results.
2013-09-20 15:09:43 -06:00
Carsten Dominik fa61eb64cf Declare a function in ob-core.el 2013-09-19 05:21:06 +02:00
Eric Schulte 39a97fcf03 rm meaningless ":padnewlines" from default header args
* lisp/ob-core.el (org-babel-default-header-args): It is likely that
  someone meant to set :padlines to "yes", but accidentally set
  :padnewlines to "yes".  Either way lets just remove this which
  shouldn't have any functional effect.
2013-09-18 15:22:52 -06:00
Aditya Siram bbe8518118 Given a block with an empty body org-babel-src-block-regexp gobbled up everything until the ending delimiter of the next code block. Fixed this by making the body regexp non-greedy. 2013-09-14 09:25:05 -06:00
Eric Schulte 9a3d30626e condition code execution by org-element-context
Thanks to Nicolas Goaziou for suggesting this change.
2013-09-08 04:51:02 -06:00
Nicolas Goaziou 6fdc2361c9 ob-core: Fix wrong indentation of results
* lisp/ob-core.el (org-babel-get-src-block-info): Look for indentation
  value at the correct location.
* testing/lisp/test-ob.el: Add test.
2013-08-21 14:16:28 +02:00
Eric Schulte 184109d416 ob-core remove-if -> org-remove-if
* lisp/ob-core.el (org-babel-merge-params): Replace remove-if with
  org-remove-if.
2013-07-29 18:18:41 -06:00
Eric Schulte 99a8d97ffa don't modify missing header arguments during merge
* lisp/ob-core.el (org-babel-merge-params): More careful to check that
  the colname- and rowname-names header arguments exist during merge.
2013-07-29 07:58:22 -06:00
Eric Schulte 3142297d69 delete colnames/rownames for replaced variables
Thanks to Rick Frankel for help debugging this problem.

* lisp/ob-core.el (org-babel-merge-params): When merging parameters, if
  a variable is replaced with a new value, then delete colnames/rownames
  for the original value of that variable.
2013-07-26 18:53:13 -06:00
Eric Schulte 4899c79e66 org-src-lang-modes in block demarcation options
* lisp/ob-core.el (org-babel-demarcate-block): Include
  org-src-lang-modes in block demarcation options.
2013-07-13 12:37:09 -06:00
Achim Gratz 8387b3b07e Merge branch 'maint' 2013-07-01 22:21:47 +02:00
Achim Gratz 8cf4ceb304 ob-core: fix regression when org-confirm-babel-evaluate is a functionp
* lisp/ob-core.el (org-babel-check-confirm-evaluate): Return result of
  evaluating the function pointed to by`org-confirm-babel-evaluate'
  when it is a functionp and its value as a variable otherwise.

This fixes a regression introduced in 5fe486807e and restores the fix
applied earlier in 8d272b0d3b (and then replaced by a cond form in
ece347e32c, which later got factored out again).
2013-07-01 22:20:48 +02:00
Eric Schulte 895bae8774 fix bug when replacing results hashes
* lisp/ob-core.el (org-babel-set-current-result-hash): Updated the
  match-string holding the hash data, and correct overlay maintenance.
2013-06-30 17:57:13 -06:00
Eric Schulte 884f5ced13 named call lines insert results like code blocks
* lisp/ob-core.el (org-babel-find-named-result): Call lines are not
  results.
  (org-babel-where-is-src-block-result): Don't implicitly name the
  results of call lines.

* lisp/ob-exp.el (org-babel-exp-non-block-elements): There is now
  another element on the call line info list.
* lisp/ob-lob.el (org-babel-lob-get-info): Return the name (if any)
  at the end of the info list.
  (org-babel-lob-execute): Pass the name through to execution.
2013-06-30 17:46:32 -06:00
Bastien Guerry 5a36318511 Merge branch 'maint' 2013-06-28 09:13:41 +02:00
Achim Gratz 30581835bd do not use mapcar* for transposing tables
* lisp/ob-core.el (org-babel-get-rownames),
  lisp/org-table.el (org-table-transpose-table-at-point): Replace the
  inadvertent use of mapcar* (from cl) by plain mapcar and direct cons
  manipulation.

The error was not caught at compilation time since both source files
require cl during compilation for using cl macros.  These were the
only uses of mapcar* in Org, but I didn't check for other cl
_functions_ (as opposed to macros, which would need to be checked if
their implementation uses cl functions).
2013-06-27 20:17:22 +02:00
Eric Schulte 685b296724 evaluate elisp header args at original call site
* lisp/ob-core.el (org-babel-execute-src-block): Ensure that the
  location is set before anything else is done.
* lisp/ob-ref.el (org-babel-ref-parse): Evaluate Emacs Lisp values in
  header arguments at the location of the original code block.
* testing/lisp/test-ob.el (test-ob/location-of-header-arg-eval): Test
  defending the new header argument evaluation behavior.
2013-06-25 09:59:56 -06:00