Commit Graph

165 Commits

Author SHA1 Message Date
Nicolas Goaziou df10309489 ob-ref: Properly resolve references in ":post" arguments
* lisp/ob-core.el (org-babel-exp-reference-buffer): New variable, as
  a replacement for `org-current-export-file'.
(org-babel-check-confirm-evaluate): Use new variable.
* lisp/ob-exp.el (org-babel-exp-in-export-file): Use new variable.
(org-babel-exp-get-export-buffer): Remove function.
(org-babel-exp-process-buffer): Change signature.
* lisp/ob-ref.el (org-babel-ref-resolve): Use new variable during
  export in order to properly resolve references.
* lisp/ox.el (org-export-execute-babel-code): Use new variable.

* contrib/lisp/org-wikinodes.el (org-wikinodes-process-links-for-export):
  Remove a cond branch as it is always
  false (`org-current-export-file' couldn't be a string).

* testing/lisp/test-ob-lob.el (test-ob-lob/export-lob-lines): Update
  test.
* testing/lisp/test-ob.el (test-ob/eval-header-argument): Update test.
* testing/lisp/test-ob-exp.el (ob-export/reference-in-post-header):
  New test.

During export, Babel executes sequentially all blocks in the buffer
being exported.  This can lead to modifications preventing some
references from being resolved.  As a workaround, Babel stores
a pristine copy of the buffer in a variable so it can always find
needed references.

Before this patch, the variable storing this copy was
`org-current-export-file' and was dynamically bound in "ox.el".  It
was used to resolve noweb references (`org-babel-expand-noweb-references')
but not regular references (`org-babel-ref-resolve').

Now, the variable is `org-babel-exp-reference-buffer' and it is bound
from `org-babel-exp-process-buffer'.  It is used to resolve all
references.  In particular, this allows to use references in :post
header.

Thanks to Jarmo Hurri for reporting it.
2014-03-19 21:34:56 +01:00
Nicolas Goaziou 05f69e5bf8 ob-exp: During export ignore Babel code under commented headlines
* lisp/ob-exp.el (org-babel-exp-process-buffer): Skip code under
  a commented headline.
* testing/lisp/test-ob-exp.el (ob-export/export-under-commented-headline):
  New test.
2014-03-15 19:40:13 -06:00
Nicolas Goaziou 8f91f657e1 Merge branch 'maint' 2014-02-01 21:54:03 +01:00
Nicolas Goaziou ac2f516edf ob-exp: Do not ignore `org-src-preserve-indentation'
* lisp/ob-exp.el (org-babel-exp-process-buffer): Also check
  `org-src-preserve-indentation' to know when to preserve indentation.
* testing/lisp/test-ob-exp.el (ob-export/export-and-indentation): New
  test.

Thanks to John Hendy for reporting it.
2014-02-01 21:52:43 +01:00
Nicolas Goaziou 98eed5baf9 Merge branch 'maint' 2014-01-29 09:05:44 +01:00
Nicolas Goaziou 63a2a403a9 ob-exp: Fix switches handling upon exporting
* lisp/ob-exp.el (org-babel-exp-code-template): Include switches in
  template.
(org-babel-exp-code): Provide %switches placeholder.
* testing/lisp/test-ob-exp.el (ob-export/export-src-block-with-switches):
  New test.
(ob-export/export-src-block-with-flags): Fix indentation.

This fixes dde6af3a62.  The confusion
came from the fact that "flags" placeholder had two meanings:
the :flags value and the block's switches (e.g., "-n").  This patch
separates these two meanings.
2014-01-29 09:01:43 +01:00
Nicolas Goaziou e5617b88cb Merge branch 'maint' 2014-01-20 17:16:32 +01:00
Nicolas Goaziou dde6af3a62 ob-exp: Fix export of src blocks with flags
* lisp/ob-exp.el (org-babel-exp-code): Fix export of src blocks with
  flags.
* testing/lisp/test-ob-exp.el (ob-export/export-src-block-with-flags):
  New test.

Thanks to Giuseppe Lipari for reporting it.
2014-01-20 14:20:06 +01:00
Nicolas Goaziou c25c80e3f3 Merge branch 'maint' 2014-01-18 15:40:43 +01:00
Nicolas Goaziou 3f9a6916aa ob-exp: Fix code execution in some corner cases
* lisp/ob-exp.el (org-babel-exp-process-buffer): Make processing more
  robust when results are inserted before source block or when source
  block is followed by multiple blank lines.
* testing/lisp/test-ob-exp.el (ob-export/export-with-results-before-block):
  Add test.
2014-01-18 15:32:41 +01:00
Bastien Guerry f8e1745440 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-07 14:19:03 +01:00
Bastien Guerry 7d9a883b50 Update copyright years again.
Hint: copyright years are all updated in Emacs.
2014-01-07 14:18:17 +01:00
Bastien Guerry c41f5075ac Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-05 06:36:11 +01:00
Bastien Guerry 0beda99171 Revert "Update copyright years."
This reverts commit 21105594fc.
2014-01-05 06:28:07 +01:00
Bastien Guerry 096ff7e078 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-04 18:58:12 +01:00
Bastien Guerry 21105594fc Update copyright years. 2014-01-04 18:56:11 +01:00
Nicolas Goaziou 5d359d864f Merge branch 'maint'
Conflicts:
	lisp/ob-exp.el
2013-12-06 16:42:43 +01:00
Nicolas Goaziou ba20e937ae ob-exp: Fix duplicate evaluation with :wrap src
* lisp/ob-exp.el (org-babel-exp-process-buffer): Fix duplicate
  evaluation with :wrap src.
(org-babel-exp-non-block-elements): Removed function.
* testing/lisp/test-ob-lob.el (test-ob-lob/export-lob-lines): Fix test.
2013-12-06 16:40:23 +01:00
Nicolas Goaziou 2b22886005 org-element: Prepare signature change
* lisp/ob-exp.el: Declare signature change.
* lisp/org-macro.el: Declare signature change.
* lisp/org.el (org-backward-element, org-drag-element-backward): Avoid
  using optional argument from `org-element-at-point'.
* testing/lisp/test-org-element.el: Update test.
2013-11-26 18:08:19 +01:00
Eric Schulte 6a4dfd3182 fixed export of inline src blocks
* lisp/ob-exp.el (org-babel-exp-non-block-elements): Fixed export of
  inline src blocks.
2013-11-23 12:24:58 -07:00
Bastien Guerry 71884cc039 Merge branch 'maint'
Conflicts:
	lisp/ob-C.el
	lisp/ob-clojure.el
	lisp/ob-core.el
	lisp/ob-lisp.el
	lisp/org-clock.el
2013-11-12 21:00:49 +01:00
Bastien Guerry f95641c443 Backport changes from Emacs revs 115081 and 115082
2013-11-12  Stefan Monnier  <monnier@iro.umontreal.ca>

	Address some byte-compiler warnings.
	* ob-abc.el (org-babel-expand-body:abc): Use dolist.
	(org-babel-execute:abc): Fix regexp quoting.
	* ob-calc.el (org--var-syms): Rename from `var-syms'.
	* ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding.
	* ob-table.el (sbe): Move debug declaration.
	* org-clock.el (org--msg-extra): Rename from `msg-extra'.
	* org.el (org-version): Avoid var name starting with _.
	(org-inhibit-startup, org-called-with-limited-levels)
	(org-link-search-inhibit-query, org-time-was-given)
	(org-end-time-was-given, org-def, org-defdecode, org-with-time):
	* org-colview.el (org-agenda-overriding-columns-format):
	* org-agenda.el (org-agenda-multi, org-depend-tag-blocked)
	(org-agenda-show-log-scoped):
	* ob-python.el (py-which-bufname, python-shell-buffer-name):
	* ob-haskell.el (org-export-copy-to-kill-ring):
	* ob-exp.el (org-link-search-inhibit-query):
	* ob-R.el (ess-eval-visibly-p):
	* ob-core.el (org-src-window-setup): Declare before use.
	(org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'.
	* ox-odt.el (org-odt-hfy-face-to-css):
	* org-src.el (org-src-associate-babel-session, org-src-get-lang-mode):
	* org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex)
	(org-bibtex-check):
	* ob-tangle.el (org-babel-tangle, org-babel-spec-to-string)
	(org-babel-tangle-single-block, org-babel-tangle-comment-links):
	* ob-table.el (sbe):
	* ob-sqlite.el (org-babel-sqlite-expand-vars):
	* ob-sql.el (org-babel-sql-expand-vars):
	* ob-shen.el (org-babel-execute:shen):
	* ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate):
	* ob-scala.el (org-babel-scala-evaluate):
	* ob-ruby.el (org-babel-ruby-table-or-string)
	(org-babel-ruby-evaluate):
	* ob-python.el (org-babel-python-table-or-string)
	(org-babel-python-evaluate-external-process)
	(org-babel-python-evaluate-session):
	* ob-picolisp.el (org-babel-execute:picolisp):
	* ob-perl.el (org-babel-perl-evaluate):
	* ob-maxima.el (org-babel-execute:maxima):
	* ob-lisp.el (org-babel-execute:lisp):
	* ob-java.el (org-babel-execute:java):
	* ob-io.el (org-babel-io-evaluate):
	* ob-haskell.el (org-babel-execute:haskell):
	* ob-fortran.el (org-babel-execute:fortran):
	* ob-exp.el (org-babel-exp-code):
	* ob-emacs-lisp.el (org-babel-execute:emacs-lisp):
	* ob-ditaa.el (org-babel-execute:ditaa):
	* ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash)
	(org-babel-parse-header-arguments, org-babel-reassemble-table)
	(org-babel-goto-src-block-head, org-babel-mark-block)
	(org-babel-expand-noweb-references, org-babel-script-escape)
	(org-babel-process-file-name):
	* ob-clojure.el (org-babel-execute:clojure):
	* ob-calc.el (org-babel-execute:calc):
	* ob-awk.el (org-babel-execute:awk):
	* ob-abc.el (org-babel-execute:abc):
	* ob-R.el (org-babel-expand-body:R):
	* ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...).

2013-11-12  Glenn Morris  <rgm@gnu.org>

	* ox-html.el (org-html-scripts): Add 2013 to copyright years.
	(org-html-infojs-template): Copyright holder to FSF.
2013-11-12 20:57:31 +01:00
Eric Schulte 51638aed3e change wording of processing message
* lisp/ob-exp.el (org-babel-exp-src-block): Tweak wording of
  processing message.
2013-11-11 09:33:05 -07:00
Sebastien Vauban cd35ad9314 Improve "Processing Org code block" message
* ob-exp.el (org-babel-exp-src-block): Improve message by adding line number.
2013-11-11 09:32:09 -07:00
Nicolas Goaziou fe1289b382 Revert "ignore inline source block on #+ prefixed lines"
This reverts commit 24812caff4.  This is
a wrong fix sinc the function already calls `org-element-context',
which cannot find Babel code in macros anyway.
2013-09-03 14:10:38 +02:00
Eric Schulte 24812caff4 ignore inline source block on #+ prefixed lines
* lisp/ob-exp.el (org-babel-exp-non-block-elements): Ignore inline
  source block on #+ prefixed lines.
2013-09-02 10:33:55 -06:00
Eric Schulte ef8039f189 Use lob call name when exporting.
* lisp/ob-exp.el (org-babel-exp-non-block-elements): Use lob call name
  when exporting.
2013-07-01 07:10:09 -06:00
Eric Schulte 884f5ced13 named call lines insert results like code blocks
* lisp/ob-core.el (org-babel-find-named-result): Call lines are not
  results.
  (org-babel-where-is-src-block-result): Don't implicitly name the
  results of call lines.

* lisp/ob-exp.el (org-babel-exp-non-block-elements): There is now
  another element on the call line info list.
* lisp/ob-lob.el (org-babel-lob-get-info): Return the name (if any)
  at the end of the info list.
  (org-babel-lob-execute): Pass the name through to execution.
2013-06-30 17:46:32 -06:00
Eric Schulte a79fd4be28 fix babel merge params bug from commit 693dda67
The `org-babel-params-from-properties' command was calling
  `org-babel-merge-params', the output of which was then being fed back
  to another call to `org-babel-merge-params'.  The merge params
  function is not designed to allow this form of recursive calling, and
  as a result many variables were being set to empty values.

  The first noticed side effect of this bug was the breakage of the
  org-babel-load-file command, which relies on default header
  arguments (namely :tangle), which were overwritten by the bug above.

  The fix involved having the `org-babel-params-from-properties'
  function return a list of alists, which may then all be handed to the
  top-level merge-params call.

* lisp/ob-core.el (org-babel-params-from-properties): Now returns a list
  of alists and does *not* call `org-babel-merge-params'.
  (org-babel-parse-src-block-match): Handle new list of lists output of
  `org-babel-params-from-properties'.
  (org-babel-parse-inline-src-block-match): Handle new list of lists
  output of `org-babel-params-from-properties'.
* lisp/ob-exp.el (org-babel-exp-src-block): Handle new list of lists
  output of `org-babel-params-from-properties'.
  (org-babel-exp-non-block-elements): Handle new list of lists output of
  `org-babel-params-from-properties'.
* lisp/ob-lob.el (org-babel-lob-execute): Handle new list of lists
  output of `org-babel-params-from-properties'.
2013-06-20 09:53:56 -06:00
Eric Schulte c3711b14d6 org-babel-current-exec-src-block-head -> org-babel-current-src-block-location
* lisp/ob-core.el (org-babel-current-src-block-location): Rename
  org-babel-current-exec-src-block-head to
  org-babel-current-src-block-location.
(org-babel-execute-src-block): Rename
  org-babel-current-exec-src-block-head to
  org-babel-current-src-block-location.
* lisp/ob-exp.el (org-babel-exp-results): Rename
  org-babel-current-exec-src-block-head to
  org-babel-current-src-block-location.
* lisp/ob-lob.el (org-babel-lob-execute): Rename
  org-babel-current-exec-src-block-head to
  org-babel-current-src-block-location.
2013-06-08 13:19:38 -06:00
Eric Schulte 805d1e63d6 save code block location during export
* lisp/ob-exp.el (org-babel-exp-results): Save the code block location
  into `org-babel-current-exec-src-block-head' during export.
2013-06-08 12:00:53 -06:00
Nicolas Goaziou 4b0f0fdecf Merge branch 'maint' 2013-05-30 15:19:03 +02:00
Nicolas Goaziou 8b431a8021 ob-exp: Tiny cleanup related to 87ab99
* lisp/ob-exp.el (org-babel-exp-process-buffer): Tiny cleanup related
  to 87ab99f563.
2013-05-30 15:18:17 +02:00
Achim Gratz 3768cec391 Babel: complete fix for priority order of header arguments from e79e8943de
* lisp/ob-core.el (org-babel-parse-inline-src-block-match),
  lisp/ob-exp.el (org-babel-exp-src-block): Give header arguments from
  properties priority over default header arguments.

The previous commit e79e8943de did fix this only in
ob-core.el (org-babel-parse-src-block-match).  It was already correct
in ob-lob.el (org-babel-lob-execute).
2013-05-19 21:06:53 +02:00
Aaron Ecay 25869e5670 Add 'inline-only option to org-export-babel-evaluate
* lisp/ob-exp.el (org-export-babel-evaluate): Add a 'inline-only option.
  (org-babel-exp-results): Implement 'inline-only for
  `org-export-babel-evaluate'.
* doc/org.texi (Exporting code blocks): Document the 'inline-only setting
  for `org-export-babel-evaluate'.

This is useful because there is no way for inline results to be stored.
The imagined usecase is that all non-inline source blocks will be
evaluated manually by the user.  Inline blocks, however, must be
evaluated during export, or they will be simply deleted by the exporter.
2013-04-18 10:41:47 +02:00
Achim Gratz 56bf3d7891 Babel: avoid superfluous confirmation for internal wrapper
* lisp/ob-exp.el (org-babel-exp-results): Suppress user confirmation
  of the emacs-lisp wrapper execution around a lob call.

* lisp/ob-lob.el (org-babel-lob-execute): Suppress user confirmation
  of the emacs-lisp wrapper execution around a lob call.
2013-04-13 08:06:58 +02:00
Bastien Guerry a2e13d7e73 ob-exp.el (org-babel-exp-src-block): Tiny docstring fix
* ob-exp.el (org-babel-exp-src-block): Tiny docstring fix.
2013-04-10 16:19:04 +02:00
Nicolas Goaziou 1cac3127c2 Fix tests related to export
* lisp/ob-exp.el (org-babel-exp-process-buffer): Renamed from
  `org-export-blocks-preprocess'.
* lisp/ox.el (org-export-execute-babel-code): Apply previous renaming.
* testing/org-test.el (org-test-at-id): Make sure the function returns
  the value of the last form in its body.
* testing/lisp/test-ob-exp.el: Fix tests.
* testing/lisp/test-ob-lob.el: Fix tests.
2013-02-06 23:06:31 +01:00
Nicolas Goaziou 413a35f7f8 ob-exp: Fix code indentation after src block evaluation
* lisp/ob-exp.el (org-export-blocks-preprocess): Do not use
  `indent-code-rigidly' as it doesn't indent contents of strings.
2013-02-03 17:07:55 +01:00
Bastien Guerry 5fc740a230 Merge branch 'maint' 2013-01-08 15:04:40 +01:00
Bastien Guerry 72bc144c15 Update Copyright lines to match Emacs format. 2013-01-08 15:04:32 +01:00
Bastien Guerry 60b23bdeac Merge branch 'maint'
Conflicts:
	contrib/lisp/htmlize.el
	etc/schema/od-manifest-schema-v1.2-os.rnc
	etc/schema/od-schema-v1.2-os.rnc
	lisp/org-exp-blocks.el
2013-01-01 16:06:17 +01:00
Bastien Guerry 98cd4687a2 Update copyright years.
Happy new year!
2013-01-01 16:04:24 +01:00
Bastien Guerry 26d24900e1 Merge branch 'maint' 2012-12-13 17:37:04 +01:00
Bastien Guerry 0584dffefe ob-exp.el (obe-marker): Delete useless var.
* ob-exp.el (obe-marker): Delete useless var.
2012-12-13 17:36:52 +01:00
Eric Schulte ff0081847c requiring ob now pulls in all of Babel 2012-12-12 10:48:56 -07:00
Nicolas Goaziou 2f4c85e6b4 ob-exp: Repair inline code evaluation after last commit.
* lisp/ob-exp.el (org-babel-exp-non-block-elements): Make sure to
  parse inline babel call or inline src block instead of the following
  object.
2012-11-24 22:30:06 +01:00
Nicolas Goaziou 78c5838e4e ob-exp: Escape code when re-creating a src blocks
* lisp/ob-exp.el (org-babel-exp-code): Escape code when re-creating
  a src blocks.
2012-10-25 16:24:48 +02:00
Nicolas Goaziou 866d28d48e ob-exp: Fix small bug
* lisp/ob-exp.el (org-export-blocks-preprocess): Pos can sometimes be
  set to a value greater than start, because of indentation, and lead
  to a search bound error.
2012-10-23 22:27:58 +02:00
Nicolas Goaziou 4dead66693 ob-exp: Remove comma-escaping special rule for Org blocks
* lisp/ob-exp.el (org-babel-exp-code): Remove comma-escaping special
  rule for Org blocks.
2012-10-22 19:23:05 +02:00