ce96d45374
Added reminder/request that we bear ESS in mind when designing org-babel 'sessions'
2009-05-31 17:48:00 -04:00
e4263daf76
Make org table result have header row and hline when appropriate. (This should have been included with commit a39d68640e). The approach I've taken is to make R always write the column names into the tsv file. If the result does not have user-supplied column-names, then R writes default column names of the form V1,V2,...,V$numcols. After reading the tsv back into lisp, we check whether it has "real" column names or the R defaults. If it has real column names, then I give the org table an hline.
...
I expect this will conflict with Eric's work on sessions, but we can deal with that.
There is a remaining quoting issue that needs to be dealt
with. E.g. with an unquoted string in the input, it comes out as
quoted in the result. This seems bad, since if you use the output as
new input you get something different (with extra
quoting). (non-idempotence if that's the right term).
| col1 | col2 | col3 |
|------+---------+------|
| 1 | 2 | 3 |
| 4 | schulte | 6 |
tabel
| "col1" | "col2" | "col3" |
|--------+-----------+--------|
| 1 | 2 | 3 |
| 4 | "schulte" | 6 |
2009-05-30 16:45:26 -04:00
eb29bef93f
Made org-babel-remove-result interactive. Eric if you agree do you want to decide on a binding?
2009-05-30 15:59:46 -04:00
e7f860cb19
Altered the python code in the chained references example. AIui the example was producing the correct answer (ruby class Array) but for the wrong reason (python was returning None)
2009-05-30 15:01:55 -04:00
a39d68640e
Allowing org-tables with hline to be referred to and passed into R. If hline is present, the first row of the table becomes the column names in R. This allows the grades example to run for me which was not true before. Eric: any commits I make should be viewed as tentative -- feel free to reject or recode them.
2009-05-30 15:00:06 -04:00
2ca59eaa0f
Preventing end of buffer error when no newline after #+end_src
2009-05-29 23:34:50 -04:00
f87a673c9c
replacing parts of org-babel lost in a merge
...
namely some extended discussion of environments and sessions under
the "Create objects in top level (global) environment in R?" header
2009-05-29 18:01:38 -07:00
d49084b73d
small additions to org-babel-comint.el
2009-05-29 17:45:40 -07:00
2fe76cd094
adding discussion to PROPOSED conversion between org-babel and noweb (e.g. .Rnw) format
2009-05-29 17:45:25 -07:00
986fcb4652
DONE pass multiple reference arguments into R
...
This should be working, see the following example...
n + m
: 10
2009-05-29 16:45:03 -07:00
8967366a3b
back to the working version
2009-05-29 16:44:33 -07:00
fe22667f78
proposed org-babel <-> noweb interconversions
2009-05-29 16:22:09 -04:00
8deae3517b
Trying to resolve conflict while understanding very little about git
2009-05-29 16:21:12 -04:00
2adb00f678
proposed org-babel <-> noweb interconversions
2009-05-29 16:17:03 -04:00
e8e24c024b
added TODO fully purge org-babel-R of direct comint interaction
2009-05-27 19:01:29 -07:00
c5a58ad6aa
moving generalized comint functions to new file org-babel-comint.el
2009-05-27 19:00:13 -07:00
a54c27ec91
attempts at improving sb snippet
2009-05-27 18:42:15 -07:00
aca19b2efc
added my session thoughts for global variables
2009-05-27 16:40:47 -07:00
906c524234
Merge branch 'master' of git@github.com:eschulte/org-babel
...
Conflicts:
org-babel.org
2009-05-27 16:40:26 -07:00
2c3c91ed12
removed org-babel-ui (tabbing blocks) as the functionality will be included in org-mode core
2009-05-27 16:34:48 -07:00
2d1a5405d1
added task for improving the sb snippet
2009-05-27 16:33:22 -07:00
5db027b3e1
Noted in hline TODO that plotting histogram in the grades example is blocked by not being able to deal with hline in the input table. (AIUI)
2009-05-26 19:40:47 -04:00
57783f9ce2
A few new TODOS: deal with hlines in tables, how do we pass multiple args in R, and some extended wittering about scoping issues in R: basically I want to argue for not abandoning the Sweave-style mode where objects created in code blocks are persisten across different blocks.
2009-05-26 19:16:46 -04:00
db9f189649
fixed bug: DONE R-code broke on "org-babel" rename
2009-05-25 19:23:30 -07:00
aec7ec05d3
more fleshing out of the introduction
2009-05-25 18:20:32 -07:00
b5174f5a7d
misc changes
2009-05-25 15:13:56 -07:00
8d271e1e92
changed README
2009-05-25 14:52:42 -07:00
02634f7d85
tweaked grades example (need some R help in plotting histogram)
2009-05-24 15:47:21 -07:00
28c29ee51e
added another example
2009-05-24 15:40:54 -07:00
9aa713be8c
updated tag line
2009-05-24 14:10:03 -07:00
6614df037f
now passing all tests with new name "org-babel"
2009-05-24 14:08:02 -07:00
f3ed956d03
removing the "existing_tools" directory
2009-05-24 13:57:53 -07:00
9247200bb0
renaming the org-babel/ directory to the lisp/ directory
2009-05-24 13:56:20 -07:00
19ce859d05
organizing yasnippets snippets
2009-05-24 13:54:05 -07:00
6451d2df1a
more cleanup and removal of the term "litorgy"
2009-05-24 13:52:51 -07:00
36eb5751d8
re-organizing main org-babel.org file
...
- replacing litorgy with org-babel
- splitting old requirements discussion into separate file
2009-05-24 13:48:29 -07:00
10bc87beac
adding introduction (from litorgy.org) to main org-babel.org file
2009-05-24 13:43:56 -07:00
4136f27680
renamed main rorg.org to org-babel.org
2009-05-24 13:42:56 -07:00
2b9b2ee7a3
rename litorgy to org-babel
2009-05-24 13:41:14 -07:00
8e9d3a51b7
moving files to new names
2009-05-24 13:39:25 -07:00
e82fb2566c
replacing litrogy with babel
2009-05-24 13:38:01 -07:00
8c568ee5fa
stubbing out the introductory text in litorgy.org
2009-05-24 13:27:56 -07:00
ddbb32fdd5
renamed examples.org to litorgy.org
2009-05-24 13:02:08 -07:00
891ed7b37b
fleshing out examples
2009-05-24 12:23:44 -07:00
f2c334b30d
DONE ensure that table ranges work
2009-05-24 10:35:13 -07:00
b8ecf9596b
rename `org-table-truncate-at-newline' to `litorgy-table-truncate-at-newline'
2009-05-24 10:35:05 -07:00
acda13f208
DEFERRED re-implement R evaluation using ess-command or ess-execute
2009-05-23 14:44:30 -07:00
0e0e671cb9
DONE error on trivial R results
2009-05-23 14:22:46 -07:00
6206e23ffd
DONE global variable indicating default to vector output
2009-05-23 09:05:53 -07:00
e2745ba306
reorder the tasks by priority
2009-05-23 08:12:12 -07:00
Dan Davison
Eric Schulte