Commit Graph

404 Commits

Author SHA1 Message Date
Eric Schulte f075ada9a1 Adding a note for a future enhancement.
* lisp/ob.el (org-babel-check-src-block): Adding a note for a future
  enhancement.
2011-09-15 09:11:12 -06:00
Eric Schulte 0037ef9261 more robust to code blocks with empty bodies
* lisp/ob.el (org-babel-parse-src-block-match): More robust to code
  blocks with empty bodies.
2011-09-13 09:36:03 -06:00
Eric Schulte 597e1eb4fe Don't error on empty code block body.
* lisp/ob.el (org-babel-parse-src-block-match): Don't error on empty
  code block body.
2011-09-13 08:57:29 -06:00
Eric Schulte a4e881207d better error message for unassigned variables
* lisp/ob.el (org-babel-merge-params): Better error message for
  unassigned variables.
2011-09-08 11:44:49 -06:00
Martyn Jago 223ac13486 Inline source block and test fixes * lisp/ob.el: Fixed late night refactoring error * testing/examples/babel.org: whitespace * testing/lisp/test-ob.el: Fixed test-org-babel/inline-src-block-regexp (regression error) Renamed test-org-babel/parse-header-args2 since duplicate test heading Made test-org-babel/parse-header-args less brittle 2011-09-06 08:53:07 -06:00
Martyn Jago d7d052ec7c Bug fixes to inline source block execution triggering. * lisp/ob.el: Created org-babel-get-inline-src-block-matches() to fix problems with org-ctrl-c-ctrl-c not triggering inline src block execution when point is on or after a space within the inline src block body. Also fixed execution problems where inline src block is on buffer line 1. * testing/examples/babel.org: Test data for org-babel-get-inline-src-block-matches()
* testing/lisp/test-ob.el: Tests for
  org-babel-get-inline-src-block-matches()
2011-09-06 08:52:59 -06:00
Eric Schulte 0d580520cc better code block demarcation
* lisp/ob.el (org-babel-demarcate-block): Copy headers and indent to
  column of point when a block is split.
2011-09-04 17:06:07 -06:00
Eric Schulte 0b6de9a026 corrected file insertion for inline results
* lisp/ob.el (org-babel-insert-result): Corrected file insertion for
  inline results.
2011-09-04 10:51:34 -06:00
Eric Schulte cae9f947be babel: don't check for header arguments in properties with leading ":"s
* lisp/ob.el (org-babel-params-from-properties): Don't check for
  header arguments in properties with leading ":"s.
2011-08-30 14:51:00 -06:00
Nicolas Goaziou 2ff74fc5b6 ob: allow inline src blocks to start at bol
* lisp/ob.el (org-babel-inline-src-block-regexp): Allow regexp to
  start at bol.
2011-08-29 16:05:18 -06:00
Achim Gratz ccc99317de backport copyright and license headers from Emacs trunk 2011-08-24 22:32:38 +02:00
Eric Schulte 21fd1523be Don't require full variable resolution when finding results
* lisp/ob.el (org-babel-where-is-src-block-result): Don't try to
  resolve variables when simply checking if we're inside of a code
  block.
2011-08-23 09:46:32 -06:00
Eric Schulte cb449a672e improve export of inline code blocks
* lisp/ob-exp.el (org-babel-exp-inline-src-blocks): Save match data
  around `org-babel-exp-do-export' which now searches in this case.
  (org-babel-exp-results): Position the point in the inline source
  block during export evaluation.
* lisp/ob.el (org-babel-insert-result): More readable code.
2011-08-22 08:23:52 -06:00
Eric Schulte 96ad99ba07 ob: idempotent code block evaluation and result removal
* lisp/ob.el (org-babel-remove-result): Idempotent code block
  evaluation and result removal.
2011-08-19 08:58:24 -06:00
Bastien Guerry 58f1dbccf8 Remove the "Version" header in Org libraries (leave it in org.el).
Also remove blank lines before the ";;; org*el ends here" declarations.

Having a "Version" header forced us to update every file when releasing a
new version of Org; it also forced us to update every file when merging Org
with Emacs trunk, thus cluttering the diffs between the previously merged
version and the new one with useless information.

Glenn Morris suggested this in emacs-devel:
http://lists.gnu.org/archive/html/emacs-devel/2011-08/msg00322.html
2011-08-17 14:42:34 +02:00
Bastien Guerry 7a18799e25 Remove arch-tag at the bottom of files. 2011-08-15 20:04:38 +02:00
Bastien Guerry 904ed18bc2 Fix copyright years for elisp files in core and contrib.
Also add "This file is not part of GNU Emacs." when this is the case.
2011-08-15 15:23:11 +02:00
David Maus 545bfddeea Provide edebug specifications for macros
* org-macs.el (org-with-gensyms, org-called-interactively-p)
(with-silent-modifications, org-bound-and-true-p)
(org-unmodified, org-re, org-preserve-lc)
(org-without-partial-completion, org-with-point-at)
(org-no-warnings, org-if-unprotected, org-if-unprotected-1)
(org-if-unprotected-at, org-with-remote-undo)
(org-no-read-only, org-save-outline-visibility)
(org-with-wide-buffer, org-with-limited-levels)
(org-eval-in-environment): Provide edebug specifications.
* org-src.el (org-src-do-at-code-block): Dto.
* org-publish.el (org-publish-with-aux-preprocess-maybe): Dto.
* org-compat.el (org-xemacs-without-invisibility): Dto.
* org-clock.el (org-with-clock-position, org-with-clock): Dto.
* org-agenda.el (org-agenda-with-point-at-orig-entry)
(org-batch-agenda, org-batch-agenda-csv)
(org-batch-store-agenda-views): Dto.
* ob.el (org-babel-do-in-edit-buffer)
(org-babel-map-src-blocks, org-babel-map-inline-src-blocks): Dto.
* ob-tangle.el (org-babel-with-temp-filebuffer): Dto.
* ob-table.el (sbe): Dto.
* ob-exp.el (org-babel-exp-in-export-file): Dto.
* ob-comint.el (org-babel-comint-in-buffer)
(org-babel-comint-with-output): Dto.
2011-08-12 08:38:59 +02:00
Eric Schulte dc904a834d removed use of copy-seq from ob.el
* lisp/ob.el (org-babel-sha1-hash): Removed use of copy-seq.
2011-08-05 14:31:59 -04:00
Eric Schulte 41bf22f4dc Revert "new interactive function for removing code block results"
This reverts commit 72817926d7.
2011-08-01 15:45:58 -06:00
Eric Schulte b8ae6a6bdb Revert "fix compilation errors introduced by most recent changes"
This reverts commit 9ff7f80f51.
2011-08-01 15:31:24 -06:00
Eric Schulte 274823c858 if a code block has a body, its last character must be a newline
* lisp/ob.el (org-babel-src-block-regexp): If a code block has a body,
  its last character must be a newline.
2011-07-29 16:04:36 -06:00
Eric Schulte 9ff7f80f51 fix compilation errors introduced by most recent changes
* lisp/ob-exp.el (org-babel-inline-src-block-regexp): Declare this variable.
* lisp/ob.el (defvar): Wrap variable declaration in eval-when-compile.
2011-07-29 10:36:39 -06:00
Eric Schulte 72817926d7 new interactive function for removing code block results
* lisp/ob-keys.el (org-babel-key-bindings): Bound to C-c C-v k.

* lisp/ob.el (org-babel-map-regexp): New generic mapping macro.
  (org-babel-map-inline-src-blocks): Rewritten to use new macro.
  (org-babel-kill-results): Remove some or all results in the current
  file.

* lisp/ob-lob.el (org-babel-map-call-lines): Map over all lob call
  lines in the current file.

* doc/orgcard.tex: Document new keybinding.
2011-07-29 10:31:56 -06:00
emacs 7340cee33a Update website to show 7.7 as current release 2011-07-28 10:33:35 +00:00
Eric Schulte b1724e02fb adding a function for inspecting code block information e.g., header arguments
* lisp/ob.el (org-babel-view-src-block-info): New function to inspect code blocks.
* lisp/ob-keys.el (org-babel-key-bindings): Key bindings for org-babel-view-src-block-info.
* doc/orgcard.tex: Documentation of new Babel function.
2011-07-25 10:50:56 -06:00
Eric Schulte 4b6bfab817 ob: only call copy-seq on proper lists
* lisp/ob.el (org-babel-sha1-hash): Only call copy-seq on proper
  lists.
2011-07-21 11:05:33 -06:00
Eric Schulte 0b9cc74c56 ob: replaced call to defunct function `org-babel-result-hash'
* lisp/ob.el (org-babel-execute-src-block): Replaced call to defunct
  function `org-babel-result-hash'.
2011-07-19 07:25:35 -06:00
Eric Schulte 8854497c35 ob-exp: on export resolve hashes in the current (not original) file buffer
* lisp/ob-exp.el (org-babel-exp-results): Resolve hashes in the
  current (not original) file buffer.
* lisp/ob.el (org-babel-current-result-hash): More informative name,
  and remove useless optional argument.
2011-07-18 17:08:37 -06:00
Bastien Guerry b93da58e1f ob.el: Bugfix about `nil' body variable when parsing block.
* ob.el (org-babel-strip-protective-commas): Return `nil'
instead of an error if no argument is given.
(org-babel-parse-src-block-match): Make sure body is defined
in the let construct.
2011-07-16 18:40:36 +02:00
Eric Schulte 8834bde39f ob: strip *single* trailing newline from code block bodies 2011-07-15 09:26:43 -06:00
Eric Schulte c6e69cd85b ob: enforce "verbatim" as synonym for "scalar"
* lisp/ob-awk.el (org-babel-execute:awk): Use "verbatim" as synonym
  for "scalar".
* lisp/ob-sh.el (org-babel-sh-evaluate): Use "verbatim" as synonym for
  "scalar".
* lisp/ob-sqlite.el (org-babel-execute:sqlite): Use "verbatim" as
  synonym for "scalar".
* lisp/ob.el (org-babel-merge-params): Use "verbatim" as synonym for
  "scalar".
2011-07-10 09:42:54 -06:00
Eric Schulte cef17b6340 ob-clojure: parse odd parens when nested isnide lists
* lisp/ob.el (org-babel-script-escape): Parse odd parens when nested
  isnide lists.
2011-07-10 09:42:54 -06:00
Bastien Guerry 9c05a7c781 Bump to version 7.6 2011-07-06 21:06:03 +02:00
Eric Schulte 6ddad0a91a ob: not including export-variable headers in cache sha1
* lisp/ob.el (org-babel-sha1-hash): Improving code layout and removing
  export-variable headers in cache sha1.
2011-07-01 12:56:22 -07:00
Eric Schulte 0a0969303a ob: declare variable to appease compiler
* lisp/ob.el (org-babel-inline-lob-one-liner-regexp): Declare variable
  to appease compiler.
2011-06-29 16:29:19 -07:00
Michael Markert b3e8b3f87c adding optional argument KIND to all org-called-interactively-p function invocations
* lisp/ob.el (org-babel-sha1-hash): Adding optional argument KIND to
  all org-called-interactively-p function invocations.
* lisp/org-agenda.el (org-agenda-redo): Adding optional argument KIND to
  all org-called-interactively-p function invocations.
  (org-agenda-show-1): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-agenda-set-tags): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
* lisp/org-ascii.el (org-export-as-latin1): Adding optional argument
  KIND to all org-called-interactively-p function invocations.
  (org-export-as-latin1-to-buffer): Adding optional argument KIND to
  all org-called-interactively-p function invocations.
  (org-export-as-utf8-to-buffer): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-export-region-as-ascii): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
* lisp/org-docbook.el (org-export-region-as-docbook): Adding optional
  argument KIND to all org-called-interactively-p function
  invocations.
* lisp/org-html.el (org-export-region-as-html): Adding optional
  argument KIND to all org-called-interactively-p function
  invocations.
* lisp/org-latex.el (org-export-region-as-latex): Adding optional
  argument KIND to all org-called-interactively-p function
  invocations.
* lisp/org-table.el (org-table-blank-field): Adding optional argument
  KIND to all org-called-interactively-p function invocations.
  (org-table-current-column): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-table-current-dline): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-table-sort-lines): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-table-sum): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-table-rotate-recalc-marks): Adding optional argument KIND to
  all org-called-interactively-p function invocations.
  (org-table-eval-formula): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (orgtbl-send-table): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
* lisp/org.el (org-mode): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-copy-subtree): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-paste-subtree): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-store-link): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-todo): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
  (org-occur): Adding optional argument KIND to all
  org-called-interactively-p function invocations.
2011-06-29 16:22:58 -07:00
Bastien Guerry 2b7dbee193 Replace interactive-p with the org-called-interactively-p macro.
Interactive-p is an obsolete function as of Emacs 23.2.
`org-called-interactively-p' takes care of the current (x)Emacs
version and use either `interactive-p' (for XEmacs and Emacs<23.2)
or `called-interactively-p'.
2011-06-29 18:24:08 +02:00
Eric Schulte b055f0d372 ob: escaping scripts now treats {} in the same manner as []
* lisp/ob.el (org-babel-script-escape): Treats {} in the same manner
  as [] and allows for forcing string conversion.
2011-06-28 16:38:30 -07:00
Eric Schulte 5b7646ce08 ob: expand noweb references to headline contents
* lisp/ob-ref.el (org-babel-ref-goto-headline-id): Split out into its
  own function.
  (org-babel-ref-headline-body): Split out into its own function.
  (org-babel-ref-resolve): Using new functions, and alignment.
* lisp/ob.el (org-babel-ref-goto-headline-id): Declare function.
  (org-babel-ref-headline-body): Declare function.
  (org-babel-expand-noweb-references): Now expands noweb references to
  headlines during expansion.
2011-06-28 13:04:58 -07:00
Eric Schulte 27c3cad589 ob: preserve the order of variable parameters
* lisp/ob.el (org-babel-merge-params): Ensure variable parameters are
  not reversed.

* lisp/ob-ref.el (org-babel-ref-split-args): Ensure variable
  parameters are not reversed.
2011-06-27 11:31:12 -07:00
Eric Schulte d1f0ae650f ob: fix results insertion for inline blocks which happen to start a line
* lisp/ob.el (org-babel-insert-result): Fix results insertion for
  inline blocks which happen to start a line.
2011-06-27 10:36:27 -07:00
Eric Schulte 9e686bd681 ob: ensure that un-named variables are assigned correctly
* lisp/ob.el (org-babel-merge-params): Do not reverse variable order,
  and be sure to increment variable index as appropriate.
2011-06-25 15:20:05 -07:00
Eric Schulte 1b95d2e9ce ob: unnamed variables are assigned in order
* lisp/ob.el (org-babel-merge-params): If variables are not named they
  are assigned in order.
2011-06-25 14:11:53 -07:00
Eric Schulte 4127e53cda ob: remove code comments pointing to online documentation
* lisp/ob.el: Remove code comment about online documentation.
* lisp/ob-exp.el: Remove code comment about online documentation.
* lisp/ob-lob.el: Remove code comment about online documentation.
2011-06-25 13:17:31 -07:00
Eric Schulte 3d60c1a1d8 ob: replace call to called-interactively-p with backwards-compatible interactive-p
* lisp/ob.el (org-babel-sha1-hash): Replace call to
  called-interactively-p with backwards-compatible interactive-p.
2011-06-24 19:48:10 -07:00
Eric Schulte 6c771d236d ob: inserting inline call block results appropriately
* lisp/ob-lob.el (org-babel-inline-lob-one-liner-regexp): Removing
  this trailing space ensures that the insertion of the results looks
  nice.
* lisp/ob.el (org-babel-insert-result): Insert inline lob line results
  as inline results.
2011-06-24 14:53:30 -07:00
Eric Schulte 01ebf445aa ob: adding noweb-ref to the list of header argument names
* lisp/ob.el (org-babel-header-arg-names): Adding noweb-ref to the
  list of header argument names.
2011-06-15 21:49:55 -07:00
Eric Schulte 8c37281cb6 ob-tangle: continued code blocks now implemented with the :noweb-ref header arg
Now *all* code blocks which either are named `ref-name' or have the
  :noweb-ref header argument value `ref-name' will have their bodies
  concatenated when resolving the noweb reference <<ref-name>>.

* lisp/ob.el (org-babel-expand-noweb-references): Concatenating all
  bodies with the appropriate name or :noweb-ref header argument.
2011-06-15 21:14:03 -07:00
Eric Schulte 978cdf276d Babel: code block may have empty bodies, now passing all tests
* lisp/ob.el (org-babel-src-block-regexp): Babel: code block may have
  empty bodies.
* testing/lisp/test-ob-tangle.el
  (ob-tangle/no-excessive-id-insertion-on-tangle): Updated the ID.
* testing/lisp/test-ob.el (test-org-babel/src-block-regexp): Cleaned
  up the test.
  (test-org-babel/default-header-args): Removed trivial test.
  (test-org-babel/get-header): Indentation.
  (test-org-babel/sha1-hash): Updated Hash for new sorting schema.
2011-06-14 13:41:32 -07:00
Eric Schulte 95f9aa5ff5 fixing compiler warnings for Babel functions
* lisp/ob-R.el (ess-local-process-name): This variable wasn't known to
  be defined.
* lisp/ob-lisp.el (org-babel-lisp-dir-fmt): This defcustom now has a
  group specified.
* lisp/ob-tangle.el (org-bracket-link-regexp): This variable wasn't
  known to be defined.
  (org-babel-tangle-combine-named-blocks): Roll my own version of a
  forbidden common lisp function.
* lisp/ob.el (org-babel-sha1-hash): Using a non-deprecated version of
  called-interactively.
2011-06-14 11:23:56 -07:00
Lawrence Mitchell cfb05268f4 lisp/ob.el: Don't modify babel info when hashing it
* lisp/ob.el (org-babel-sha1-hash): Don't modify info argument by
side-effect when sorting result-params list.

copy-sequence only does shallow copies, so if we're going to modify a
sub-list, we need to make sure we copy it first.
2011-06-03 07:04:02 -06:00
Lawrence Mitchell 3f61432898 lisp/ob.el: Fix org-babel-result-regexp to match users
* lisp/ob.el (org-babel-result-regexp): Use non-shy group around
org-babel-data-names.

By default regexp-opt returns a shy group around its arguments.  But
users of org-babel-result-regexp expect the third match-string to
contain the hash.  With a shy group, the second match-string contains
the hash.
2011-06-02 12:07:21 -06:00
Eric Schulte 2da0ba6024 ob: keep \n inside of the code block body
* lisp/ob.el (org-babel-src-block-regexp): Keep the now-mandatory
  newline inside of the code block body.
2011-05-14 08:12:23 -06:00
Sean O'Halpin 12faa69330 * lisp/ob.el: Avoid spurious matches to literal
"#+end_src" inside a source block.

Added newline to org-babel-src-block-regexp.
2011-05-14 08:11:07 -06:00
Eric Schulte 7d12d45778 ob: new function to check header arguments for errors C-c C-v c
* doc/orgcard.tex: Adding line for org-babel-check-src-block.
* lisp/ob-keys.el (org-babel-key-bindings): Adding key sequence for
  org-babel-check-src-block.
* lisp/ob.el (org-babel-expand-src-block): Fit within 80 cols.
  (org-babel-edit-distance): Returns the edit distance of two strings.
  (org-babel-check-src-block): Check a code block for errors.
2011-05-13 10:54:44 -06:00
Eric Schulte ec293ae62b configurable names for inline data labels
* lisp/ob-ref.el (org-babel-ref-resolve): Using the new result regexp.
* lisp/ob.el (org-babel-data-names): Configurable list of names of data.
  (org-babel-result-regexp): Using new results regexp.
2011-05-06 14:45:38 -06:00
Eric Schulte 60864e851b ob: now looking for header arguments in #+Properties: as well as #+Babel:
* lisp/ob.el (org-babel-params-from-buffer): Now looking for header
  arguments in #+Properties: as well as #+Babel:.  Also, we're no
  longer caching these results into a file local variable.
2011-04-14 20:37:21 -06:00
Eric Schulte 7021f70f02 ob: fix collection of table column names during export
* lisp/ob.el (org-babel-process-params): Make this function
  idempotent, as it will sometimes be called multiple times.
2011-04-04 11:28:45 -06:00
Eric Schulte d0a4ed53f1 ob: new header argument `padline' controls newline padding around tangled code
* lisp/ob-tangle.el (org-babel-spec-to-string): Check value of padline
  on tangling, no longer use the now-removed variable
  `org-babel-tangle-pad-newline'.
* lisp/ob.el (org-babel-header-arg-names): Add padline to the list of
  header argument names.
  (org-babel-default-header-args): Set the default value of padline to
  "yes".
  (org-babel-merge-params): Cleaned up the merge logic, added padline.
* doc/org.texi (padline): Documentation of the new padline header
  argument.
2011-03-15 11:16:09 -06:00
Eric Schulte ae68febfbb ob: adding "shebang" to known code block header argument names
* lisp/ob.el (org-babel-header-arg-names): Adding "shebang" to known
  code block header argument names.
2011-03-15 10:44:26 -06:00
emacs 11a10bdfe7 Update website to show 7.5 as current release 2011-03-07 14:27:39 +00:00
Eric Schulte 60a8ba556d ob: read string variable values wrapped in double quotes, removing the quotes
* lisp/ob.el (org-babel-read): Read string variable values wrapped in
  double quotes, removing the quotes.
2011-03-02 07:55:39 -07:00
Eric Schulte 03a6844054 ob: fix compiler warnings
* lisp/ob-exp.el (org-babel-exp-in-export-file): Now takes the
  language as an argument.
  (org-babel-exp-src-block): Explicitly pass language to
  `org-babel-exp-in-export-file'.
  (org-babel-exp-inline-src-blocks): Removed unused code.
  (org-babel-exp-results): Explicitly pass language to
  `org-babel-exp-in-export-file'.

* lisp/ob.el (org-babel-library-of-babel): declare variable
  (org-babel-tangle-comment-links): declare function
2011-03-01 10:52:35 -07:00
Eric Schulte cfb06bc70b removing babel declarations for no-longer-used `org-in-item-p' 2011-03-01 10:42:47 -07:00
Eric Schulte b691233171 ob: allow passing elisp vectors through to code blocks
* lisp/ob.el (org-babel-read): Pass elisp vectors through to code
  blocks.
2011-03-01 10:31:00 -07:00
Carsten Dominik c895af44d4 Fix some compiler warnings
* lisp/ob.el (org-src-lang-modes): Defvar.
(org-at-item-p): Declare function.
* lisp/ob-calc.el (calc-store): Require.
(var-syms): Defvar.
* lisp/ob-python.el (py-default-interpreter): Defvar.
2011-03-01 08:08:36 +01:00
Eric Schulte be0b3ca1ca ob: inhibit lisp evaluation of values read from tables and lists
* lisp/ob.el (org-babel-read-table): Inhibit lisp evaluation of values
  when reading from tables.
  (org-babel-read-list): Inhibit lisp evaluation of values when
  reading from lists.
  (org-babel-read): Add optional argument which can be used to inhibit
  lisp evaluation of value.
2011-02-28 20:06:29 -07:00
Eric Schulte d0a93cee37 ob: code block regexp now matches blocks with empty bodies
Thanks to Martyn Jago for this patch

* lisp/ob.el (org-babel-src-block-regexp): Code block regexp now
  matches blocks with empty bodies.
2011-02-27 14:38:58 -07:00
Eric Schulte cfcf493c29 ob: If escaped return value doesn't parse cleanly, then return it literally.
* lisp/ob.el (org-babel-script-escape): If script escaped value
  doesn't parse cleanly, then return it literally.
2011-02-27 14:29:01 -07:00
Eric Schulte dd31a84af6 ob: canonical presentation of header arguments when hashing
* lisp/ob.el (org-babel-sha1-hash): Sort list values to header
  arguments, and sort the words in strings.
2011-02-27 09:40:35 -07:00
Eric Schulte 426d4182b3 ob: more adjustments for new list handling
* lisp/ob-ref.el (org-babel-ref-at-ref-p): Only try to read results as
  a list if at the *beginning* of a list item.
* lisp/ob.el (org-babel-read-result): Only try to read results as a
  list if at the *beginning* of a list item.
2011-02-22 21:12:13 -07:00
Eric Schulte 1e35a5ea37 ob: updates related to list changes
* lisp/ob.el (org-babel-read-list): Reading the value of a list has
  been updated to reflect the new structure of org-mode lists in
  elisp.
  (org-babel-insert-result): Writing code block results to lists has
  been updated to reflect the new list structure.
  (org-babel-result-end): Remove a previous change to end-of-list
  marker detection
2011-02-21 12:40:49 -07:00
Eric Schulte 39192b78d2 ob: allow elisp code in results header arguments
* lisp/ob.el (org-babel-process-params): Allow elisp code in
  specification of results header arguments.
2011-02-20 02:16:43 -07:00
Eric Schulte 10d76f720a ob: adjust to changes in list format
* lisp/ob.el (org-babel-result-end): Adjust marker of list end to
  changes in the list format.
2011-02-18 06:13:29 -07:00
Nicolas Goaziou bd68169b4b org-list: reorder file, rename functions, improve comments
* lisp/ob.el (org-babel-result-end): apply renaming.
* lisp/org-exp.el (org-export-mark-list-properties): apply renaming.
* lisp/org-list.el (org-list-prevs-alist): renamed from
  org-list-struct-prev-alist.
(org-list-parents-alist): renamed from org-list-struct-parent-alist.
(org-list-write-struct): renamed from org-list-struct-fix-struct.
(org-list-parse-list, org-sort-list, org-list-indent-item-generic,
org-toggle-checkbox, org-update-checkbox-count, org-cycle-list-bullet,
org-list-repair, org-insert-item, org-move-item-up, org-move-item-up,
org-move-item-down, org-next-item, org-previous-item,
org-end-of-item-list, org-beginning-of-item-list, org-apply-on-list):
apply renaming.
(org-get-bullet): removed function, as it is not needed anymore.
2011-02-18 12:45:11 +01:00
Nicolas Goaziou b219690f05 ob: compute correct end position when results are a list
* lisp/ob.el (org-babel-result-end): end position is end of current
  sublist instead of bottom point, as results might be inserted in a
  list themselves.
2011-02-18 12:45:10 +01:00
Nicolas Goaziou 2adbcfffe1 Remove uses of deprecated top-point and bottom-point functions
* lisp/org.el (org-skip-over-state-notes,org-store-log-note): use new
  accessors.

* list/ob.el (org-babel-result-end): use new accessors.

* list/org-exp.el (org-export-mark-list-ending): use new accessors.
2011-02-18 12:45:08 +01:00
Eric Schulte e9cba96b0a ob: fix indentation bug when inserting results from inline code blocks
* lisp/ob.el (org-babel-insert-result): Don't choke if indent is not a number.
2011-02-14 23:51:40 -07:00
Dan Davison 1d1368e142 ob: Maintain in-context text properties when listing search hits in minibuffer
* lisp/ob.el (org-babel-src-block-names): Don't strip text properties from search hits
(org-babel-result-names): Don't strip text properties from search hits
2011-02-13 11:13:32 +00:00
Dan Davison a8f2163d76 ob: `substring' comparison instead of regexp matching
* lisp/ob.el (org-babel-script-escape): Use `substring' comparison
instead of regexp matching

Workaround for regexp limitation, e.g.

(string-match
 "^\\[.+\\]$"
 (concat
  "["
  (mapconcat (lambda (i) "x") (number-sequence 1 33500) "")
  "]"))

gives "Stack overflow in regexp matcher" in several current builds.
2011-02-13 11:03:58 +00:00
Dan Davison 934e6b0510 ob: Allow ":header-arg-name" as matching property name.
* lisp/ob.el (org-babel-params-from-properties): Test for
"header-arg-name" and ":header-arg-name", in that order.
2011-02-12 18:26:10 +00:00
Bastien Guerry 03c33d0d38 Don't wrap org-entry-get into condition-case.
* ob.el (org-babel-params-from-properties): don't wrap
org-entry-get into condition-case.

* org-table.el (org-table-export): don't wrap org-entry-get
into condition-case.

* org.el (org-store-link): don't wrap org-entry-get into
condition-case.
2011-02-12 19:02:52 +01:00
Dan Davison 775d962788 ob: Fix bug in using #+babel properties in fresh buffer
* lisp/ob.el (org-babel-params-from-buffer): Return desired value
rather than nil from failed re search.
2011-02-12 15:29:07 +00:00
Eric Schulte 7b720d28a6 ob: adding no-expand to list of header argument names
* lisp/ob.el (org-babel-header-arg-names): no-expand is now part of
  the default header argument names list.
2011-02-10 09:34:46 -07:00
Eric Schulte 496ea6c527 ob: changing the default header args for inline code blocks 2011-02-04 13:28:51 -07:00
Dan Davison bbb28d5bf8 Get rid of extra help message when editing src code
* lisp/org-src.el (org-edit-src-persistent-message): Change docstring.
(org-edit-src-code): Get rid of help message in echo area.
* lisp/ob.el (org-babel-do-in-edit-buffer): Do not pass 'quietly
argument to org-edit-src-code as this has been removed
2011-02-01 11:44:32 +00:00
Dan Davison 9511f9e153 ob: Allow src block to be executed with point on #+header line
* lisp/ob.el (org-babel-where-is-src-block-head): Detect src block if
point is on a #+header line.
2011-01-31 15:38:49 +00:00
Dan Davison 4a2ed86f6d ob: Don't allow #+header lines to prevent block finding
* lisp/ob.el (org-babel-where-is-src-block-head): Skip over
intervening #+header lines when searching for block associated with
block name line.
2011-01-30 13:07:11 +00:00
Eric Schulte ba0f6d765f ob: safer insertion of results into a list
* lisp/ob.el (org-babel-result-end): Replace call to org-in-item-p to
  the more specific org-at-item-p.
2011-01-29 08:40:57 -07:00
Eric Schulte d0ca215105 ob: simplified code block exportation -- same process for inline and regular blocks
* lisp/ob-exp.el (org-babel-exp-inline-src-blocks): Simplified
  exportation of inline code blocks using normal code block execution
  mechanism to insert results.
  (org-babel-exp-results): Results exportation mechanism is unified
  for both inline and regular code blocks.
* lisp/ob.el (org-babel-where-is-src-block-result): Returns the point
  after an inline code block for inline code blocks.
2011-01-27 12:48:45 -07:00
Eric Schulte 8cca4424a4 ob: better insertion of inline code block results
* lisp/ob.el (org-babel-insert-result): Special handling of the
  position of results of inline code blocks.
  (org-babel-examplize-region): Now able to comment inline regions.
2011-01-27 11:31:47 -07:00
Eric Schulte 39c982eb49 ob: ob-exec-buf and ob-exec-tree now eval inline code blocks as well
* lisp/ob.el (org-babel-map-inline-src-blocks): Macro for executing
  code in each inline code block.
  (org-babel-execute-buffer): Executes inline code blocks as well as
  regular code blocks.
2011-01-25 10:15:47 -07:00
Eric Schulte db0e815a4c ob: fixed issue with ":results replace org"
* lisp/ob.el (org-babel-result-end): Now recognizes "#+begin_org"
  blocks for removal.
2011-01-25 09:15:06 -07:00
Dan Davison 8d00354704 ob: more permissive regexp match for inline src blocks
* lisp/ob.el (org-babel-inline-src-block-regexp): Character preceding
"src_" can now be anything as long as it is neither alphanumeric nor
'-'.
2011-01-21 17:47:51 +00:00
Dan Davison dcfeec887a docstring edits
* lisp/ob.el (org-babel-merge-params): docstring typo
2011-01-20 17:20:19 +00:00
Dan Davison 05ef2ae7cc ob: Allow babel settings to be made in multiple #+babel: lines
* lisp/ob.el (org-babel-params-from-buffer): Process all #+babel:
lines in the buffer
2011-01-20 17:20:18 +00:00
Dan Davison 624141cc68 ob: Make #+header lines override higher-level settings
* lisp/ob.el (org-babel-get-src-block-info): Alter order of merge arguments
2011-01-20 17:20:18 +00:00
Eric Schulte 3d4b884cb3 ob: Ensure all portions of results wrappers end in newlines
* lisp/ob.el (org-babel-insert-result): Ensure all parts of result
  wrappers end in newlines.
2011-01-20 09:30:28 -07:00
Eric Schulte eb3bf55d48 ob: new ":comments noweb" option for wrapping noweb references in comment links
* lisp/ob-tangle.el (org-babel-spec-to-string): Adding "noweb" as a
  linking comment type
  (org-babel-tangle-comment-links): Returns comment links for the
  source code block at point

* lisp/ob.el (org-babel-expand-noweb-references): When :comments is
  set to "noweb" then wrap noweb references in comment links.
2011-01-16 08:21:16 -07:00
Eric Schulte 47537dcda8 ob: allow detangling of text containing '\'s -- Thanks to Seth Burleigh
* lisp/ob.el (org-babel-update-block-body): Literal argument to
  `replace-match' to allow insertion of text containing '\'.
2011-01-13 10:00:39 -07:00
Eric Schulte 1c3ef40f24 ob: fixed bug in org-babel-read-result
Thanks to Leo Alekseyev for bringing this bug to my attention

* lisp/ob.el (org-babel-open-src-block-result): Must collect result
  *before* jumping to the result buffer.
2011-01-11 10:41:35 -07:00
Eric Schulte ea847dcb5f ob: fix small bug in `org-babel-src-block-names'
* lisp/ob.el (org-babel-src-block-names): Fix bug, wrong match-string
  used after update to regexp.
2011-01-11 10:14:13 -07:00
Eric Schulte e72f207c3e ob: ensure that org-babel-temporary-directory is bound before using
* lisp/ob.el (org-babel-temp-file):  Ensure that
  org-babel-temporary-directory is bound before using.
  (org-babel-remove-temporary-directory):  Safer error throwing.
2011-01-09 17:47:45 -07:00
Eric Schulte 8674006516 ob: Uses org-src-lang-modes to resolve language names for evaluation.
* lisp/ob.el (org-babel-execute-src-block): Uses org-src-lang-modes to
  resolve language names for evaluation.
2011-01-07 11:41:15 -07:00
Eric Schulte 1d3db31ca7 ob: better parsing of list output from scripting languages
* lisp/ob.el (org-babel-script-escape): Replace commas with spaces for
  better list reading when list items are packed with commas,
  e.g. Haskell list output.
2010-12-21 20:18:07 -07:00
Eric Schulte ece347e32c org-babel-confirm-evaluate: better doc and code when using function as
Thanks to Vladimir Alexiev for submitting this patch

* lisp/ob.el (org-babel-confirm-evaluate): Fix for the case when
  org-confirm-babel-evaluate is a function (used to always ask no matter
  what the function returns).
* doc/org.texi (Code evaluation security): Add example for using a
  function.
2010-12-21 09:37:19 -07:00
Eric Schulte 4e146a5ac2 ob: a little more refactoring
* lisp/ob.el (org-babel-execute-src-block): Removed unused flet function.
2010-12-21 14:19:25 +00:00
Dan Davison 366abc6175 ob: Refactoring
* lisp/ob.el (org-babel-format-result): New function to format results
of src block execution.
(org-babel-execute-src-block): Use `org-babel-format-result' when
writing to file.
(org-babel-open-src-block-result): Use `org-babel-format-result' when
displaying results in a buffer; name results buffer differently.
2010-12-21 14:19:24 +00:00
Dan Davison 70349cd0c2 ob: Bug fix in writing results to file
* lisp/ob.el (org-babel-execute-src-block): Avoid calling
`orgtbl-to-generic' on number results
2010-12-21 14:19:24 +00:00
Eric Schulte e0b7927678 ob: :sep specifies table separator when opening or writing tabular results
* lisp/ob.el (org-babel-execute-src-block): Allow specification of
  table separator with :sep header argument.
  (org-babel-open-src-block-result): Allow specification of table
  separator with :sep header argument.
2010-12-21 14:19:24 +00:00
Dan Davison 74d752b4b5 ob: Wipe error buffer before executing buffer/subtree
* lisp/ob.el (org-babel-execute-buffer): Wipe error buffer at outset
of executing buffer (note that this handles execute subtree also).
2010-12-21 11:06:35 +00:00
Dan Davison a871c6a77c new :results behavior 2010-12-20 16:44:24 +00:00
Dan Davison d6fefb406e babel: Interpret string results as file links with :results file
* lisp/ob.el (org-babel-execute-src-block): With :results file, when
:file is not supplied, interpret result as a file link as long as it
is a string.
2010-12-19 14:25:18 +00:00
Eric Schulte f5f2851401 Noweb references can now be resolved from the library of babel.
* lisp/ob.el (org-babel-expand-noweb-references): Noweb references can
  now be resolved from the library of babel.
2010-12-15 10:16:58 -07:00
Eric Schulte e919c97d7e fixed insertion of trailing newline after code block evaluation
* lisp/ob.el (org-babel-result-end): No longer leaving trailing new
  line after block removal.
2010-12-15 09:58:57 -07:00
Achim Gratz 8dfd6a6140 Fixup 95bb16661b
* org.el: remove spurious linebreak introduced by earlier patch
* ob.el, ob-ref.el: remove double fix of the same problem

Achim Gratz <Stromeko@Stromeko.DE> wrote:

> this patch had already been partially applied by Carsten and Eric (in
> slightly a different way than I suggested).  The changes to ob.el and
> ob-ref.el (the require statements) are therefore superfluous and should
> probably be backed out.  There was also a superfluous whitespace change
> in org.el (a closing paren that was broken onto the next line).  Patch
> to this effect is attached.  You've already cleaned up org-agenda.el and
> the conditions in org-macs...
2010-12-12 20:09:28 +01:00
Carsten Dominik 7666ba421f Version number back to 7.4 2010-12-10 18:49:40 +01:00
Carsten Dominik 76a25715c9 Bump version number to 7.5 2010-12-10 18:43:10 +01:00
Dan Davison c6a945e82c babel: Handle errors when temporary directory is on a different partition
* lisp/ob.el (org-babel-remove-temporary-directory): Handle exception
  with message informing of failure to remove directory.

Thanks to Antti Kaihola for the bug report:

http://thread.gmane.org/gmane.emacs.orgmode/34394

From: Antti Kaihola <akaihola <at> gmail.com>
Subject: Can't close Emacs+org-mode if /tmp and /home on different	partitions
Newsgroups: gmane.emacs.orgmode
Date: 2010-12-02 08:33:28 GMT (6 days, 1 hour and 22 minutes ago)
I have /tmp on my root partition and a separate partition for /home.
When trying to close an Emacs session which is using org-mode, I get
this error:

    move-file-to-trash: Non-regular file: Is a directory, /tmp/babel-XXXXXXX

(where XXXXXXX are random characters).

I tracked down the problem to org-babel-remove-temporary-directory
which ob.el adds to kill-emacs-hook. It tries to remove the temporary
directory using delete-directory, which in turn tries to move the
directory (by renaming) into trash, which is in my home directory.

I added this to my ~/.emacs.d/init.el:

   (custom-set-variables '(temporary-file-directory "/home/akaihola/tmp/"))

and closing Emacs works correctly again. However, since my init.el is
part of emacs-starter-kit which I update frequently, I'd prefer not to
modify that file. Unfortunately the customization hook
emacs-starter-kit provides (~/.emacs.d/custom.el) is loaded too late
to affect the temporary directory.

I'm running emacs-snapshot 1:20090909-1 in Ubuntu 10.10. Looks like
this is really an Emacs bug and is already fixed:
http://groups.google.com/group/gnu.emacs.bug/browse_thread/thread/0446b8684a8ef504
2010-12-08 10:11:49 +00:00
Eric Schulte 1ce04c5057 updating Code block evaluation messages
Thanks to Sébastien Vauban for suggesting these changes.

* lisp/ob.el (org-babel-insert-result): More informative code block
  evaluation messages.
2010-12-06 08:04:17 -07:00
Eric Schulte 201eb8ce23 ob: examplization of inserted results is smarter about markers
* lisp/ob.el (org-babel-examplize-region): Check if `end' is a marker
  or a point and handle appropriately.
2010-12-03 07:11:09 -07:00
Eric Schulte a9a77780dc change requirement order to ob-eval is always loaded
* lisp/ob-eval.el (require): No longer require ob.el to allow
  requiring by ob.el.
* lisp/ob.el (ob-eval): Require ob-eval.
2010-12-01 07:19:45 -07:00
Eric Schulte 232651a57e ob: mention code block name when ":eval query"
* lisp/ob.el (org-babel-confirm-evaluate): Show code block's name when
  it is available during evaluation query.
2010-11-30 22:02:02 -07:00
Eric Schulte c4418fc472 ob: fixed insertion of result error
* lisp/ob.el (org-babel-insert-result): Using markers instead of
  points for more robust buffer anchors.
2010-11-30 19:22:34 -07:00
Eric Schulte c3b7eca193 ob: fixed newly introduced empty result error
* lisp/ob.el (org-babel-examplize-region): Remove old assertion which
  no longer applies to the result insertion code.
2010-11-27 17:51:46 -07:00
Eric Schulte 01b4f63fe9 ob: no longer escaping results which will be wrapped in a block.
* lisp/ob.el (org-babel-insert-result): No longer escape results which
  will be wrapped in a block.
2010-11-26 15:48:22 -07:00
Eric Schulte 30b2d604c5 ob: more descriptive "Evaluation Aborted" message
* lisp/ob.el (org-babel-confirm-evaluate): More descriptive message
  when evaluation is aborted or disabled.
2010-11-25 10:28:04 -07:00
Eric Schulte b5f7b02814 "wrap" :results header argument wraps code block results
* lisp/ob.el (org-babel-insert-result): Responds to new "wrap" header
  argument.
  (org-babel-merge-params): Includes new "wrap" header argument in
  one of the results header argument exclusive groups.

* lisp/org.el (org-additional-option-like-keywords): Fontify begin and
  and results lines as comments.
2010-11-24 10:19:44 -07:00
Eric Schulte 950bea36f8 Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode 2010-11-23 09:39:41 -07:00
Eric Schulte d24b04d82f ob: cleaner parsing of header arguments
Thanks to Charles C. Berry for insisting on this issues existence

  This change is now secured with a unit test

* lisp/ob.el (org-babel-parse-header-arguments): Stripping trailing
  spaces off of header arguments (even the first one).
2010-11-23 09:39:26 -07:00
Dan Davison 666e6ed5e7 babel: Wipe error buffer clean at start of execution
* lisp/ob-eval.el (org-babel-error-buffer-name): Define new variable.

  (org-babel-eval-error-notify): Use new variable `org-babel-error-buffer-name'
  (org-babel-eval): Make temp error buffer invisible to the user with
		    initial space in name.
  (org-babel-eval-wipe-error-buffer): New function to wipe the error message buffer.

* lisp/ob-exp.el (org-babel-eval-wipe-error-buffer): Declare external function
  `org-babel-eval-wipe-error-buffer'.
  (org-babel-exp-results): Wipe error buffer clean at outset of execution

* lisp/ob.el (org-babel-execute-src-block-maybe): Wipe error buffer clean at
  outset of execution
  (org-babel-eval-wipe-error-buffer): Declare external function
				    `org-babel-eval-wipe-error-buffer'.
2010-11-23 13:26:31 +00:00
Eric Schulte b174975eb7 ob: safer conversion of results of scripting languages into elisp objects
* lisp/ob-python.el (org-babel-python-table-or-string): Using
  `org-babel-script-escape' for reading string input from scripting
  languages.

* lisp/ob-ruby.el (org-babel-ruby-table-or-string): Using
  `org-babel-script-escape' for reading string input from scripting
  languages.

* lisp/ob.el (org-babel-script-escape): Using
  `org-babel-script-escape' for reading string input from scripting
  languages.

* lisp/ob-haskell.el (org-babel-haskell-table-or-string): Using
  `org-babel-script-escape' for reading string input from scripting
  languages.
2010-11-22 18:51:00 -07:00
Achim Gratz 95bb16661b Fix byte compiler warnings
* org-macs.el (org-called-interactively-p): Wrap function call in
	with-no-warnings.
	(with-silent-modifications) Declare macro for Emacs < 23.2.

TINYCHANGE
2010-11-22 21:22:27 +01:00
Eric Schulte 3785722e92 ob: fix compiler warnings introduced by code-block list reading/writing 2010-11-22 07:21:18 -07:00
Eric Schulte 6baa78b2da ob: no longer adding extra ":" to singleton first header args
* lisp/ob.el (org-babel-parse-header-arguments): Removed addition of
  ":" to singleton first header arguments as it was leading to errors.
2010-11-22 06:44:06 -07:00
Eric Schulte 451acd11ce move ob-map-src-blocks up in ob.el and autoload it
* lisp/ob.el (org-babel-map-src-blocks): Moved to earlier in the file
  and now autoloading.
2010-11-19 01:16:29 -07:00
Eric Schulte e34033fec2 using higher level function for checking list membership
Thanks to Nicolas Goaziou for pointing this out

* lisp/ob-ref.el (org-babel-ref-at-ref-p): Use higher level function
  for testing list membership.
* lisp/ob.el (org-babel-read-result): Use higher level function for
  testing list membership.
  (org-babel-result-end): Use higher level function for testing list
  membership.
2010-11-18 09:34:21 -07:00
Eric Schulte 97f4c3f9a1 fixed (hopefully) error in compiled form of org-babel-map-src-blocks
* lisp/ob.el (org-babel-map-src-blocks): Ensure that the file argument
  is only evaluated once.
2010-11-17 17:03:44 -07:00
Eric Schulte 88947588bc lists are now a data type recognized by code blocks
* lisp/ob-ref.el (org-babel-ref-resolve): Recognize `list' as a unique
  type of data
  (org-babel-ref-at-ref-p): Recognize `list' as a unique type of data

* lisp/ob.el (org-babel-read-result): Recognize `list' as a unique
  type of data
  (org-babel-read-list): A function to read a textual Org-mode list
  into an emacs-lisp list.
  (org-babel-insert-result): Recognizes the "list" result param to
  insert data as an Org-mode list.
  (org-babel-result-end): Find the end of an Org-mode list.
  (org-babel-merge-params): Add "list" as a result param.

* doc/org.texi (results): Documentation of the new "list" results
  header argument.
2010-11-17 16:47:55 -07:00
Eric Schulte c676f62361 passing header arguments through to called code blocks
* lisp/ob-lob.el (org-babel-lob-get-info): including pass-through
  header arguments in results variable header argument string

* lisp/ob.el (org-babel-execute-src-block): working with new header
  argument setup
  (org-babel-parse-header-arguments): only split header argument
  strings when []'s are balanced
2010-11-08 14:18:33 -07:00
Bastien Guerry 6630edbd0f Set version number to 7.3 2010-11-07 14:52:14 +01:00
Dan Davison ed5665e1e2 babel: Use `copy-sequence' instead of `copy-tree'
* lisp/ob.el: `copy-sequence' suffices to copy alist; no need for
`copy-tree'
2010-10-31 13:22:13 +00:00
Dan Davison d6599c5699 babel: Ensure that result is a file link when that is intended
* lisp/ob.el (org-babel-execute-src-block): If ":results file" is in
effect, then ensure that the value of :file is returned as the result;
don't rely on language files for this.

Examples of languages that were not honouring :file are sh and
emacs-lisp.
2010-10-31 12:55:35 +00:00
Dan Davison cf0cdd7785 babel: Fix data structure corruption when sorting parameters
* lisp/ob.el (org-babel-sha1-hash): Avoid corrupting `info' data
structure by side-effects of `sort'.
2010-10-31 12:51:18 +00:00
Dan Davison 1ee54e0db7 babel: Don't resolve variable references unless requested
* lisp/ob.el (org-babel-initiate-session): Don't resolve variable
  references unless prefix arg is supplied.
2010-10-29 20:44:58 +01:00
Eric Schulte 2152f1ec28 ob-tangle: detangle changes in code files back to the original org files
* lisp/ob-tangle.el (org-babel-update-block-body): declaring function
  for updating code block bodies
  (org-babel-spec-to-string):
  (org-babel-detangle): detangle all tangled and commented code blocks
  in the current file back to org
  (org-babel-tangle-jump-to-org): jump from a tangled and commented
  file back to the originating org-mode code block
ob-tangle: detangle changes in code files back to the original org files

* lisp/ob-tangle.el (org-babel-update-block-body): declaring function
  for updating code block bodies
  (org-babel-spec-to-string):
  (org-babel-detangle): detangle all tangled and commented code blocks
  in the current file back to org
  (org-babel-tangle-jump-to-org): jump from a tangled and commented
  file back to the originating org-mode code block
2010-10-29 02:13:38 -06:00
Carsten Dominik 82af72eef7 Push version number to 7.02trans 2010-10-29 09:11:46 +02:00
Dan Davison 9c1acbc667 babel: Fix regexp parsing of functional-style arguments
* lisp/ob.el (org-babel-get-src-block-info): Retrieve contents of
  parentheses, excluding parentheses themselves
2010-10-27 16:31:34 +01:00
David Maus 095f9e298f Declare to silence byte compiler
* ob.el (org-babel-ref-resolve): Declare to silence byte compiler.
2010-10-24 20:45:26 +02:00
Eric Schulte d87e33ea19 babel: ob-execute-src-block respects prefix argument (which forces re-calculation)
* lisp/ob.el (org-babel-execute-src-block): respects prefix argument
  (which forces re-calculation)
2010-10-21 07:50:32 -06:00
Eric Schulte 3fd8d906e4 babel: removed needless param sorting from ob-execute-src-block
* lisp/ob.el (org-babel-execute-src-block): removed needless param
  sorting from ob-execute-src-block, the params are sorted already by
  ob-sha1-hash
2010-10-21 07:44:34 -06:00
Eric Schulte b664510ec4 babel: ensure that info is sorted at the header argument level
* lisp/ob.el (org-babel-sha1-hash): ensure that info is sorted at the
  header argument level
2010-10-21 07:11:13 -06:00
Dan Davison 7c44c8ca7d babel: Make test for identical input more stringent when hashing
* ob.el (org-babel-sha1-hash): Consider words in different
	order as different input.
2010-10-21 07:02:50 -06:00
Dan Davison f2e547c657 babel: Fix check for zero length sequences when constructing hash key
* ob.el (org-babel-sha1-hash): Fix check for zero length
	sequences
2010-10-21 07:02:22 -06:00
Eric Schulte 91f8cfaebb ob: ob-demarcate updated to reflect the new info list contents
* lisp/ob.el (org-babel-demarcate-block): updated to reflect the new
  info list contents
2010-10-21 13:06:56 +01:00
Eric Schulte b50125a1ac fixed minor bug in and improved efficiency of org-babel-map-src-blocks
* lisp/ob.el (org-babel-map-src-blocks): fixed minor bug in and
  improved efficiency of org-babel-map-src-blocks
2010-10-21 13:06:56 +01:00
Dan Davison 4247150094 babel: Don't resolve variable references during `org-babel-demarcate-block'
* ob.el (org-babel-demarcate-block): Use light version of
	`org-babel-get-src-block-info'
2010-10-21 13:06:55 +01:00
Eric Schulte e905dbe0f6 babel hashing now handles more complex types in params
* lisp/ob.el (org-babel-sha1-hash): now handles more complex types in
  params
* testing/examples/babel.org: whitespace
* testing/lisp/test-ob.el (test-org-babel/sha1-hash): new test for
  babel hashing
2010-10-21 13:06:55 +01:00
Eric Schulte cea9fd7421 sanding off some rough corners left by the reworking of process-params
* lisp/ob.el (org-babel-execute-src-block): generally using the new
  more informative params
  (org-babel-process-params): don't forget the :var portion of
  variable assignments
2010-10-21 13:06:55 +01:00
Dan Davison 83332fb69c babel: New version of generic expansion function
* ob.el (org-babel-expand-src-block): Supply variable
	assignment lines to generic expansion function
	(org-babel-expand-body:generic): Prepend body with optional
	variable assignment lines
2010-10-21 13:06:01 +01:00
Eric Schulte 43c712fccb unifying ob-process-params and ob-expand-variables
* lisp/ob-exp.el (org-babel-exp-results): replaced old function call

* lisp/ob-lob.el (org-babel-lob-execute): replaced old function call

* lisp/ob-ref.el (org-babel-ref-parse): removed obsolete optional
  params argument, also no longer chokes when handed an
  already-resolved reference

  (org-babel-ref-resolve): removed obsolete optional params argument

* lisp/ob.el (org-babel-ref-parse): updated function declaration
  (org-babel-get-src-block-info): replaced old function call
  (org-babel-header-arg-names): indentation
  (org-babel-execute-src-block): now expanding all parameters using
  the newly combined org-babel-process-params
  (org-babel-switch-to-session-with-code): indentation
  (org-mode-hook): indentation
  (org-babel-process-params): now packages all results into the
  parameter alist and does variable expansion, this should no longer
  be called from inside of language functions
  (org-babel-expand-noweb-references): updated function call for newly
  removed obsolete function parameter
2010-10-21 13:06:01 +01:00
Eric Schulte fd97cb9386 ob-lob: now working with the new variable resolution setup
* lisp/ob-lob.el (org-babel-lob-execute): now expanding variable
  references before execution

* lisp/ob.el (org-babel-merge-params): better indentation, and finally
  sorted out the proper replacement of conflicting variable
  definitions
2010-10-21 13:06:00 +01:00
Eric Schulte 71d50277b5 ob: only sort parameters if it's required for caching
* lisp/ob.el (org-babel-execute-src-block): only sort parameters if
  it's required for caching
2010-10-21 13:06:00 +01:00
Eric Schulte 1aed27c104 ob-merge-params: fixed order or precedence for variables
* lisp/ob.el (org-babel-merge-params): fixed order or precedence for
  variables
2010-10-21 13:06:00 +01:00
Eric Schulte 2ddcf9e255 removing obsoleted optional third argument from org-babel-expand-body:LANG
* lisp/ob-C.el (org-babel-expand-body:c++): removing obsoleted
  optional third argument
  (org-babel-expand-body:c++): removing obsoleted optional third
  argument
  (org-babel-C-expand): removing obsoleted optional third argument
* lisp/ob-R.el:
  (org-babel-expand-body:R): removing obsoleted optional third
  argument
  (org-babel-execute:R): removing obsoleted optional third argument
  (org-babel-R-variable-assignments): removing obsoleted optional
  third argument
* lisp/ob-asymptote.el:
  (org-babel-expand-body:asymptote): removing obsoleted optional third
  argument
  (org-babel-execute:asymptote): removing obsoleted optional third
  argument
* lisp/ob-clojure.el:
  (org-babel-expand-body:clojure): removing obsoleted optional third
  argument
  (org-babel-execute:clojure): removing obsoleted optional third
  argument
* lisp/ob-css.el:
  (org-babel-expand-body:css): removing obsoleted optional third
  argument
* lisp/ob-ditaa.el:
  (org-babel-expand-body:ditaa): removing obsoleted optional third
  argument
* lisp/ob-dot.el:
  (org-babel-expand-body:dot): removing obsoleted optional third
  argument
  (org-babel-execute:dot): removing obsoleted optional third argument
* lisp/ob-emacs-lisp.el:
  (org-babel-expand-body:emacs-lisp): removing obsoleted optional
  third argument
  (org-babel-execute:emacs-lisp): removing obsoleted optional third
  argument
* lisp/ob-gnuplot.el:
  (org-babel-expand-body:gnuplot): removing obsoleted optional third
  argument
* lisp/ob-haskell.el:
  (org-babel-expand-body:haskell): removing obsoleted optional third
  argument
  (org-babel-execute:haskell): removing obsoleted optional third
  argument
  (org-babel-load-session:haskell): removing obsoleted optional third
  (org-babel-prep-session:haskell): removing obsoleted optional third
* lisp/ob-js.el:
  (org-babel-expand-body:js): removing obsoleted optional third
  argument
  (org-babel-execute:js): removing obsoleted optional third argument
* lisp/ob-latex.el:
  (org-babel-expand-body:latex): removing obsoleted optional third
  argument
* lisp/ob-lisp.el:
  (org-babel-expand-body:lisp): removing obsoleted optional third
  argument
  (org-babel-execute:lisp): removing obsoleted optional third argument
* lisp/ob-mscgen.el:
  (org-babel-expand-body:mscgen): removing obsoleted optional third
  argument
* lisp/ob-ocaml.el:
  (org-babel-expand-body:ocaml): removing obsoleted optional third
  argument
  (org-babel-execute:ocaml): removing obsoleted optional third
  argument
* lisp/ob-octave.el:
  (org-babel-expand-body:matlab): removing obsoleted optional third
  argument
  (org-babel-expand-body:octave): removing obsoleted optional third
  argument
  (org-babel-execute:octave): removing obsoleted optional third
  argument
  (org-babel-octave-variable-assignments): removing obsoleted optional
  third
* lisp/ob-org.el:
  (org-babel-expand-body:org): removing obsoleted optional third
  argument
* lisp/ob-perl.el:
  (org-babel-expand-body:perl): removing obsoleted optional third
  argument
  (org-babel-execute:perl): removing obsoleted optional third argument
* lisp/ob-plantuml.el:
  (org-babel-expand-body:plantuml): removing obsoleted optional third
  argument
* lisp/ob-python.el:
  (org-babel-expand-body:python): removing obsoleted optional third
  argument
  (org-babel-execute:python): removing obsoleted optional third
  argument
  (org-babel-python-variable-assignments): removing obsoleted optional
  third
* lisp/ob-ruby.el:
  (org-babel-expand-body:ruby): removing obsoleted optional third
  argument
  (org-babel-execute:ruby): removing obsoleted optional third argument
* lisp/ob-sass.el:
  (org-babel-expand-body:sass): removing obsoleted optional third
  argument
* lisp/ob-scheme.el:
  (org-babel-expand-body:scheme): removing obsoleted optional third
  argument
  (org-babel-execute:scheme): removing obsoleted optional third
  argument
* lisp/ob-screen.el:
  (org-babel-expand-body:screen): removing obsoleted optional third
  argument
* lisp/ob-sh.el:
  (org-babel-expand-body:sh): removing obsoleted optional third
  argument
  (org-babel-execute:sh): removing obsoleted optional third argument
  (org-babel-sh-variable-assignments): removing obsoleted optional
  third
* lisp/ob-sql.el:
  (org-babel-expand-body:sql): removing obsoleted optional third
  argument
* lisp/ob-sqlite.el:
  (org-babel-expand-body:sqlite): removing obsoleted optional third
  argument
  (org-babel-execute:sqlite): removing obsoleted optional third
  argument
* lisp/ob.el:
  (org-babel-expand-body:generic): removing obsoleted optional third
  argument
2010-10-21 13:06:00 +01:00
Eric Schulte 832dc71f31 ob-lob: now working with the new ob-get-src-block-info
ob-get-src-block-info wasn't correctly returning the name of the
  code block

* lisp/ob-lob.el (org-babel-lob-ingest): now returns the count of
  ingested code blocks

* lisp/ob.el (org-babel-get-src-block-info): walks up possible
  additional header arg lines before checking for the code block name

  (org-babel-merge-params): can now handle empty variables gracefully
2010-10-21 13:06:00 +01:00
Eric Schulte 9931dae20a babel: exporting now working with the new ob-get-src-block-info schema
includes a simple export test

* lisp/ob-exp.el (org-babel-exp-in-export-file): wrapper for
  collecting information from within the original export file

  (org-babel-exp-src-blocks): simplified through use of the above
  macro

  (org-babel-exp-code): simplified through the use of new functions
  for parsing header arguments

  (org-babel-exp-results): simpler high-level organization, also this
  is now where the expansion of variable references takes place during
  export

* lisp/ob.el (org-babel-expand-variables): broke variable replacement
  in a parameter list into it's own function

  (org-babel-get-src-block-info): now using the above function
2010-10-21 13:05:59 +01:00
Eric Schulte 9ba9ef99a6 babel: now allows multi-line header arguments with #+headers: before code block
for example, from the test of this functionality
* multi-line header arguments
  :PROPERTIES:
  :ID:       b77c8857-6c76-4ea9-8a61-ddc2648d96c4
  :END:

  (map 'list #'list numbers letters)

| 1 | a |
| 2 | b |
| 3 | c |
| 4 | d |
| 5 | e |
| 6 | f |
| 7 | g |

* lisp/ob.el (org-babel-multi-line-header-regexp): new variable for
  matching header lines preceding code blocks

  (org-babel-src-name-w-name-regexp): now includes possible header
  lines between source name and code block

  (org-babel-get-src-block-info): now also collecting header arguments
  from preceding header lines

  (org-babel-src-block-names): updated match-string to reflect new
  value of org-babel-src-name-w-name-regexp

  (org-babel-merge-params): fixed error in variable string regexp
2010-10-21 13:05:59 +01:00
Eric Schulte 05054d5227 ensure ob-get-src-block-info returns nil if not matches
* lisp/ob.el (org-babel-get-src-block-info): small but crucial fix,
  this should return nil if not match found
2010-10-21 13:05:59 +01:00
Eric Schulte 529e7c98fd nominally working 2010-10-21 13:05:59 +01:00
Eric Schulte 9c0aae1814 more lightening -- resolving foreign functions between ob-ref and ob 2010-10-21 13:05:59 +01:00
Eric Schulte c2dce939e8 more lightening 2010-10-21 13:05:58 +01:00
Dan Davison 21e6738593 babel: Better variable names in `org-babel-initiate-session'
* ob.el (org-babel-initiate-session): Better variable names
2010-10-21 13:03:36 +01:00
Dan Davison 68b810dab5 Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode 2010-10-21 13:03:09 +01:00
Eric Schulte e290e9e2f4 fixed some compilation warnings
* lisp/ob.el (org-number-sequence): declared
* lisp/ob-R.el (org-number-sequence): declared
2010-10-20 14:49:41 -06:00
Dan Davison ba9236054a babel: Bug fix in `org-babel-map-src-blocks'
* ob.el (org-babel-map-src-blocks): Store correct value of `end-block'
2010-10-19 13:20:35 +01:00
Dan Davison a6d30d3b9b babel: New function to mark the body of a src block.
* ob.el (org-babel-mark-block): New function to mark the body
    of a src block in the style of `mark-defun'.

    * ob-keys.el (org-babel-key-bindings): Bind
    `org-babel-mark-block' to C-c C-v C-M-h
2010-10-19 13:19:33 +01:00
Carsten Dominik c5a8bc9db4 Improve XEmacs compatibility
* lisp/org-compat.el (org-number-sequence): New function.
* lisp/ob-R.el (org-babel-expand-body:R): Use `org-number-sequence'.
* lisp/ob.el (org-babel-where-is-src-block-result): Use `org-number-sequence'.
(org-babel-current-buffer-properties): Fix variable definition.
* lisp/ob-ref.el (org-babel-ref-index-list): Use `org-number-sequence'.
* lisp/ob-latex.el (org-babel-latex-tex-to-pdf): Use the 2-argument version
of `shell-command'.
* lisp/org-latex.el (org-export-as-pdf): Use the 2-argument version
of `shell-command'.
2010-10-18 14:23:38 +02:00
Eric Schulte 19785d667f ob: keep max line with at <=80
* lisp/ob.el (org-babel-params-from-properties): max line with at <=80
2010-10-14 07:17:08 -06:00
Dan Davison edaa4d7a6f babel: Allow header arguments set in properties to be lisp forms
* ob.el (org-babel-params-from-properties): Use
	`org-babel-read' to interpret property as header
	argument value
2010-10-14 13:15:39 +01:00
Dan Davison 82429ef406 babel: Simplify reading of header argument values
* ob.el (org-babel-parse-header-arguments): Simplify reading
	of header arg value
2010-10-14 13:15:29 +01:00
Eric Schulte 0901585105 ob: minor fix to a documentation string
* lisp/ob.el (org-babel-number-p): fixed documentation string
2010-10-06 10:50:39 -06:00
Eric Schulte 055f0e621e babel: fixing issues with org-babel-temporary-directory
Thanks to Achim Gratz

* lisp/ob.el (or): don't create org-babel-temporary-directory in batch
  as it won't be removed by emacs-kill-hook
  (org-babel-remove-temporary-directory): only try to remove this
  directory if it exists
2010-10-01 14:08:23 -06:00
Eric Schulte 773307d61a fixing byte-compilation warning in ob.el
Thanks to Achim Gratz for pointing this out

* lisp/ob.el (org-babel-temporary-directory): fixing byte-compilation
  warning in ob.el
2010-10-01 13:56:20 -06:00
Eric Schulte 2ce87e5e8c fixes compiler warning
* lisp/ob.el (org-babel-load-languages): fixes compiler warning
2010-09-30 16:19:05 -06:00
Eric Schulte a37072786c using `org-babel-temporary-directory' to collect and remove temporary files
We had stopped using this because users noticed that temporary
directories were accumulating in their /tmp directory.  I believe this
was due to repeatedly evaluating the ob.el emacs-lisp file, which
repeatedly re-defined the `org-babel-temporary-directory' variable
creating multiple directories.  This problem should be fixed by
wrapping the defvar holding this form in (unless (boundp org...)).

* lisp/ob.el (boundp): uncommenting defvar form for
  org-babel-temporary-directory
  (org-babel-temp-file): now using the org-babel-temporary-directory
  for holding new babel temporary files
  (org-babel-remove-temporary-directory): removes the babel temp dir
  when Emacs shutsdown
  (kill-emacs-hook): now removing the babel temp dir on Emacs shutdown
2010-09-30 07:39:59 -06:00
Dan Davison 6cd5777583 babel: `org-babel-get-src-block-info'
* ob.el (org-babel-get-src-block-info): remove optional
	HEADER-VARS-ONLY argument; further simplification
2010-09-27 15:08:42 +01:00
Eric Schulte 8d272b0d3b fixed bug causing extra prompt in ob-confirm-evaluate in some cases
* lisp/ob.el (org-babel-confirm-evaluate): fixed bug causing extra
  prompt in ob-confirm-evaluate in some cases
2010-09-27 07:43:33 -06:00
Eric Schulte eb0068e9cd ob-demarcate-block: visible region and completion during language selection
Thanks to Sébastien Vauban for the suggestion

* lisp/ob.el (org-babel-demarcate-block): visible region and
  completion during language selection
2010-09-27 07:18:00 -06:00
Dan Davison b7e11ff608 babel: Remove comment
* ob.el (org-babel-get-src-block-info): remove comment
2010-09-26 22:06:52 +01:00
Dan Davison ee96df5c73 babel: Simplify `org-babel-get-src-block-info'
* ob.el (org-babel-get-src-block-info): Simplify function
2010-09-26 22:06:12 +01:00
Dan Davison 8b327f2a77 babel: Fix bug in `org-babel-get-src-block-info'
* ob.el (org-babel-get-src-block-info): Form info list
	correctly when parenthesised arguments are missing
2010-09-26 21:36:24 +01:00
Dan Davison d398331b3f babel: Use `org-babel-map-src-blocks' in `org-babel-execute-buffer'
* ob.el (org-babel-execute-buffer): Re-implement using
	`org-babel-map-src-blocks'
2010-09-23 19:09:19 +01:00
Dan Davison ec0b3892b9 babel: New function to process file names for use in external processes
* ob.el (org-babel-process-file-name): New function
	(org-babel-maybe-remote-file): Delete function

	* ob-sql.el (org-babel-execute:sql):
	Use org-babel-process-file-name

	* ob-scheme.el (org-babel-execute:scheme):
	Use org-babel-process-file-name

	* ob-sass.el (org-babel-execute:sass):
	Use org-babel-process-file-name

	* ob-ruby.el (org-babel-ruby-evaluate):
	Use org-babel-process-file-name

	* ob-python.el (org-babel-python-evaluate-external-process):
	Use org-babel-process-file-name
	(org-babel-python-evaluate-session):
	Use org-babel-process-file-name

	* ob-plantuml.el (org-babel-execute:plantuml):
	Use org-babel-process-file-name

	* ob-perl.el (org-babel-perl-evaluate):
	Use org-babel-process-file-name

	* ob-octave.el (org-babel-octave-evaluate-external-process):
	Use org-babel-process-file-name
	(org-babel-octave-evaluate-session):
	Use org-babel-process-file-name,
	don't use org-babel-maybe-remote-file

	* ob-lisp.el (org-babel-execute:lisp):
	Use org-babel-process-file-name

	* ob-ledger.el (org-babel-execute:ledger):
	Use org-babel-process-file-name

	* ob-js.el (org-babel-execute:js):
	Use org-babel-process-file-name

	* ob-haskell.el (org-babel-haskell-export-to-lhs):
	Use org-babel-process-file-name

	* ob-gnuplot.el (org-babel-execute:gnuplot):
	Use org-babel-process-file-name

	* ob-eval.el (org-babel-eval-read-file): Don't use
	org-babel-maybe-remote-file

	* ob-dot.el (org-babel-execute:dot):
	Use org-babel-process-file-name

	* ob-ditaa.el (org-babel-execute:ditaa):
	Use org-babel-process-file-name

	* ob-clojure.el (org-babel-clojure-evaluate-external-process):
	Use org-babel-process-file-name

	* ob-asymptote.el (org-babel-execute:asymptote):
	Use org-babel-process-file-name

	* ob-R.el (org-babel-R-assign-elisp): Don't use
	org-babel-maybe-remote-file, use org-babel-process-file-name
	(org-babel-R-evaluate-external-process):
	Use org-babel-process-file-name
	(org-babel-R-evaluate-session):
	Use org-babel-process-file-name

	* ob-C.el (org-babel-C-execute):
	Use org-babel-process-file-name

In addition to passing the file path through `expand-file-name',
tramp-style remote file names are converted to conventional (local)
file paths. The reason is that, if a tramp file name was in use in
emacs, then the shell command will be executing on the remote machine
in question. Further, by default the file name is passed through
`shell-quote-argument'.
2010-09-22 22:10:13 +01:00
Eric Schulte 0ec264ddf7 org-babel-demarcate-block now works before first headline
fix suggested by Dan Davison

* lisp/ob.el (org-babel-demarcate-block): better initialization of stars
2010-09-21 09:34:50 -06:00
Eric Schulte 26b9263926 fixing compiler warnings in org-babel-demarcate-block
Thanks to Achim Gratz for pointing these out

* lisp/ob.el (org-babel-demarcate-block): fix compiler warnings
2010-09-21 07:03:12 -06:00
Eric Schulte 00eceedf0f Babel: better handling of empty space when demarcating code blocks
* lisp/ob.el (org-babel-demarcate-block): better handling of empty
  space around demarcated area
2010-09-21 06:44:17 -06:00
Eric Schulte 88b8b83951 interactive demarcation of code blocks
Thanks to Richard Riley for the initial idea and implementation

* lisp/ob.el (org-babel-demarcate-block): interactive demarcation of
  code blocks
* lisp/ob-keys.el (org-babel-key-bindings): key bindings for block
  demarcation
* doc/orgcard.tex: documentation in the ref card
2010-09-20 08:27:20 -06:00
Eric Schulte fbb828a107 ob: hash construction invariant to order of header arguments 2010-09-18 14:02:33 -04:00