dc2baab09c
babel: protecting restrictions on `org-babel-execute-subtree'
2010-06-07 11:52:04 -07:00
ee94addaac
babel: now strips protective commas from code blocks on tangling
2010-06-07 11:46:11 -07:00
4e43e7fea8
babel: adding library-of-babel functions for file I/O
...
* contrib/babel/lisp/org-babel.el (org-babel-insert-result): Replaced
call to `org-cycle' with a call to the simpler and more appropriate
`org-table-align'.
* contrib/babel/library-of-babel.org (Read/Write): adding
library-of-babel functions for file I/O
2010-06-06 19:56:09 -07:00
367d81d9dc
babel: all code blocks with sessions are now evaluated on export
...
* contrib/babel/lisp/org-babel-exp.el (org-babel-exp-do-export):
This brings babel more inline with Sweave, by ensuring that any code
block which could change the state in a persistent session is
executed. Prior to this change the following org-mode text like would
not export as expected because the x variable would not be
initialized.
** inline expressions
:PROPERTIES:
:session: *R*
:END:
#+begin_src R :exports code :results silent
x<-5
#+end_src
the sum of 1 and 4 is equal to src_R{x}
2010-06-06 19:13:14 -07:00
359a86cda4
babel-asymptote: now accepts variables in a variety of types
2010-06-04 09:51:18 -06:00
198780f1ff
babel: adding some newline padding around tangle code blocks
2010-06-02 14:07:20 -06:00
c5e3660fa9
babel: tangle works when buffer name and file name differ
...
Thanks to "w t" from the mailing list for reporting this bug and
providing reproduction information.
2010-06-02 09:07:23 -06:00
47a6c25df3
org-babel-tangle: fixing indentation
2010-06-02 09:07:22 -06:00
afab7897a5
babel: fixed error resolving references on export
...
Thanks to Nicolas Goaziou for reporting this problem
2010-06-02 09:07:01 -06:00
b7e273f25d
babel-exp: minor documentation and indentation changes
2010-06-02 09:07:00 -06:00
8fac7aa38b
Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode
2010-05-28 08:48:22 -06:00
ff58dacc7c
babel: `org-babel-tangle-w-comments' controls comment insertion in tangled code
...
* contrib/babel/lisp/org-babel-tangle.el (org-babel-spec-to-string):
The insertion of automatically generated comments into tangled code
is now customizable through the `org-babel-tangle-w-comments'
variable.
2010-05-28 08:48:03 -06:00
e5d8764de6
babel: Declare R-specific header arguments
...
* babel/lisp/langs/org-babel-R.el
(org-babel-header-arg-names:R):
New variable to contain R-specific header args
2010-05-28 09:53:13 -04:00
71cd358e21
babel: check properties for language-specific header arguments
...
* contrib/babel/lisp/org-babel.el
(org-babel-params-from-properties):
Check for language-specific header arguments
(org-babel-parse-src-block-match):
Pass lang parameter when checking properties for header args
(org-babel-parse-inline-src-block-match):
Pass lang parameter when checking properties for header args
2010-05-28 09:50:20 -04:00
6fc2ea3b9b
Xemacs incompatibilities
...
Carsten Dominik <carsten.dominik@gmail.com> writes:
> On May 17, 2010, at 4:39 PM, Michael Sperber wrote:
>
>> In particular, fixing the require won't be enough: org-babel-python.el
>> uses `run-python' and interacts with the inferior Python, whereas
>> python-mode.el defines `py-shell'.
>>
>> Should I try to abstract over the differences?
>
> Yes, this would be much appreciated. (I think, Eric or Dan?)
OK, I've attached a patch that makes `org-babel-python' work on XEmacs.
Most of the issues are pure XEmacs issues. Notes:
- XEmacs doesn't have [[:digit:]] - I hope to rectify this in the
future, but it seems there's no downside in this particular case to
replacing by [0-9].
- XEmacs doesn't have `move-end-of-line', but does have `end-of-line'.
I don't understand the intent of having both of these, but the code
seems fine with `end-of-line'.
- It seems there are way too few `require's throughout org-babel. I
don't know if it's OK to add the ones I needed.
- `org-babel-python-evaluate' looked broken as-is: It doesn't use the
`body' argument properly, the result is (I think) processed in the
wrong order and not properly split into lines. I've fixed all these,
but a review is probably in order.
2010-05-26 22:45:01 -06:00
5d52daab10
babel: org-babel-execute-buffer is no longer flummoxed by hidden subtrees
2010-05-26 19:44:04 -06:00
8d78778c89
babel: updated key bindings in refcard
...
and removed a binding which was shadowing the `keyboard-quit'
2010-05-26 16:55:48 -06:00
4f113630f8
org-babel-exp: no longer throws errors on empty bodies
2010-05-25 20:20:13 -06:00
ceeb4681ef
babel: tangled files which include shebang lines are now made executable
2010-05-25 20:01:20 -06:00
6151c88f10
babel: replaced `line-number-at-pos' with `count-lines'
2010-05-25 17:31:34 -06:00
d84699459e
babel: xemacs variable compatibility check -- thanks to Volker Zell
2010-05-25 17:29:41 -06:00
2139651c0d
babel: org-babel-clean-text-properties now checks for valid argument
...
thanks to Michael Sperber for pointing this out
2010-05-17 17:13:20 -06:00
236f209b25
babel: changes to org-babel key bindings
2010-05-17 17:08:32 -06:00
38b4fcc90c
XEmacs compatibility
2010-05-14 14:40:44 +02:00
b7555ae433
babel: new keymap `org-babel-map' and new prefix keys "C-c C-v"
2010-05-12 23:51:41 -06:00
98af57cdbd
babel: ob-sh.el now respects the :results "scalar" option
2010-05-07 17:18:38 -06:00
2d1025298e
babel: More concise matlab/octave code template
...
Patch by Christopher Long
2010-05-03 21:45:27 -04:00
245d98786d
babel: matlab: detect end of evaluation under Emacs Link
...
Currently, this uses the presence of a temporary file to signal that
Matlab Emacs Link evaluation is not yet complete.
Emacs Link support added in collaboration with Christopher Long.
2010-05-03 21:45:01 -04:00
c133dd394e
babel: Fix org-babel-screen after expand changes
2010-05-02 21:30:13 -04:00
d2b9343029
babel: Avoid trouble with '%' in matlab/octave output
...
Patch by Christopher Long
2010-05-02 18:26:22 -04:00
65a98e3282
babel: fix editing error in org-babel-octave.el
2010-05-02 00:41:53 -04:00
1a43a5939b
Merge branch 'octave-matlab'
2010-04-30 18:26:37 -04:00
a61de7b130
babel: matlab: don't try matlab-shell if using emacs link
2010-04-30 18:23:36 -04:00
a3cc050a96
babel: `org-babel-get-colnames' no longer requires hline
2010-04-30 13:03:46 -06:00
6f399c20b6
babel: Allow EmacsLink to be used for matlab session evaluation
...
To use EmacsLink, the user will need to set
org-babel-matlab-with-emacs-link to a non-nil value, and also arrange
that (matlab-with-emacs-link) evaluates to a non-nil value.
2010-04-30 14:39:31 -04:00
10a07a644b
babel: R: allow forcing of colnames without hline
2010-04-30 14:14:27 -04:00
7f3e64bfb4
babel: R: output colnames when other languages would
2010-04-30 14:14:13 -04:00
6a1f5b2bcb
babel: ob-emacs-lisp now wraps body in a progn on execute
2010-04-27 13:55:48 -06:00
837e898936
babel: Fall back to generic expand function during tangling
2010-04-27 15:02:55 -04:00
44bb82d38e
babel: `org-babel-ref-resolve-reference' doesn't break paren nesting when resolving indicies
2010-04-24 13:26:34 -06:00
b8adc74894
babel: ob-emacs-lisp and ob-clojure now only wrap bodies in `let' forms when variables are present
2010-04-24 09:21:14 -06:00
bc0a6c624d
babel: adding :no-expand option to code blocks to inhibit body expansion
2010-04-24 09:08:27 -06:00
c12e18b6cf
babel: org-babel-reassemble-table checks for matching table/name dimensions
2010-04-23 11:54:31 -06:00
b8c4bb27ba
babel: Use org-src edit buffer for expanded body preview
2010-04-23 10:10:01 -06:00
2f71d79e5e
org-babel-c: now using org-babel-read on outline-property parameters
2010-04-23 10:10:00 -06:00
9124e9055d
fixed bug in org-babel-execute:C
2010-04-23 10:10:00 -06:00
59251c8d08
babel: fixed bug in org-babel-execute:gnuplot related to body-expand changes
2010-04-23 10:10:00 -06:00
d0dde7c6d5
babel: flip default values of :hlines header arg
2010-04-23 10:10:00 -06:00
9fdd058669
org-babel-expand-body:R
2010-04-23 10:10:00 -06:00
32c7ae42c3
babel: remove superfluous newlines from tangled C code bodies
2010-04-23 10:10:00 -06:00
03f13106fb
babel: adding org-babel-expand-body:generic for languages w/o body expansion support
2010-04-23 10:10:00 -06:00
626cb079e4
babel: fixed bug in org-babel-expand-body:sass
2010-04-23 10:10:00 -06:00
7decdec3b2
babel: erase previous contents of preview buffer
2010-04-23 10:10:00 -06:00
8872454566
org-babel-expand-body:R
2010-04-23 10:10:00 -06:00
0917218da5
babel: fixed bug in org-babel-expand-body:python
2010-04-23 10:10:00 -06:00
9ff31a5110
babel: bound `org-babel-expand-src-block' to (C-c M-b p)
2010-04-23 10:09:59 -06:00
0734bf96ba
org-babel-expand-body:sql
2010-04-23 10:09:59 -06:00
1fdc012e3d
org-babel-expand-body:sh
2010-04-23 10:09:59 -06:00
e6c979f0d7
org-babel-expand-body:screen
2010-04-23 10:09:59 -06:00
35434e1389
org-babel-expand-body:sass
2010-04-23 10:09:59 -06:00
394031eb38
org-babel-expand-body:ruby
2010-04-23 10:09:59 -06:00
1bcafa5d9f
org-babel-expand-body:python
2010-04-23 10:09:59 -06:00
598dc1ad67
org-babel-expand-body:perl
2010-04-23 10:09:59 -06:00
41663b0ce4
org-babel-expand-body:oz
2010-04-23 10:09:59 -06:00
2759b6621d
org-babel-expand-body:octave
2010-04-23 10:09:59 -06:00
8e9f4eec88
org-babel-expand-body:ocaml
2010-04-23 10:09:58 -06:00
e07aced178
org-babel-expand-body:matlab
2010-04-23 10:09:58 -06:00
7bd0712ac2
org-babel-expand-body:latex
2010-04-23 10:09:58 -06:00
dd500005ef
org-babel-expand-body:haskell
2010-04-23 10:09:58 -06:00
58c8ddd5c6
org-babel-expand-body:gnuplot
2010-04-23 10:09:58 -06:00
01918dffc4
org-babel-expand-body:dot
2010-04-23 10:09:58 -06:00
4d862912b2
org-babel-expand-body:ditaa
2010-04-23 10:09:58 -06:00
b805089eb8
org-babel-expand-body:css
2010-04-23 10:09:58 -06:00
6d61edd1ea
org-babel-expand-body:clojure
2010-04-23 10:09:58 -06:00
4ba08f9b5b
org-babel-expand-body:asymptote
2010-04-23 10:09:58 -06:00
34eed9b48d
org-babel-expand-body:c, org-babel-expand-body:c++
2010-04-23 10:09:58 -06:00
8c8c96972e
org-babel-expand-body:emacs-lisp
2010-04-23 10:09:58 -06:00
2fe12b99f4
babel: adding new function `org-babel-expand-src-block'
...
org-babel-expand-body:lang function needs to be implemented by every
language, and is used to expand the body of a code block for
execution or tangling
2010-04-23 10:09:57 -06:00
788779e16c
babel: typo in org-babel-get-rownames
2010-04-23 10:09:57 -06:00
c777e729fb
babel: bring R row- and col-names into line with others
2010-04-23 10:09:57 -06:00
bd3c85ed60
babel: add :rownames header arg for R
2010-04-23 10:09:57 -06:00
d5dd160b23
babel: bug fix in org-babel-get-colnames
2010-04-23 10:09:57 -06:00
b9aa92ba21
org-babel: splitting `org-babel-pick-name' into it's own function
...
also renaming org-babel-manicure-tables to org-babel-disassemble-tables
2010-04-23 10:09:57 -06:00
bfc93ca808
babel: added row/col-name support to all applicable languages
2010-04-23 10:09:57 -06:00
10b3da72fc
babel: adding row/col-names functions
...
adding a suite of functions to org-babel.el which can be used to
handle hlines, rownames, and columnnames in input tables. These
functions can be called from any org-babel-language.el file.
done in close collaboration with Dan Davison
2010-04-23 10:09:57 -06:00
0c8b86e9a9
org-babel: keep within 80 columns
...
this is exclusively whitespace and indentation changes, with the
goal of cleaning up the file, and keep all lines within 80 columns
2010-04-23 10:09:57 -06:00
927ff1125b
babel: `org-babel-ref-index-list' now converts trivial lists to scalars
...
Thanks to Darlan Cavalcante Moreira for this suggestion.
2010-04-21 09:35:13 -06:00
c6ea2a1457
Use overlay-in and overlay-at instead of compatibility functions
2010-04-20 12:17:06 +02:00
97e20048b2
Use `add-to-invisibility-spec' directly
2010-04-18 19:41:05 +02:00
b35b9914e6
Revert "Use `add-to-invisibility-spec' directly"
...
This reverts commit c2e5b13a2d
2010-04-18 19:38:10 +02:00
c2e5b13a2d
Use `add-to-invisibility-spec' directly
2010-04-18 19:26:30 +02:00
f45e6a28b1
Use the normal overlay API, not Org's one
2010-04-18 16:49:58 +02:00
70ba21e699
babel: new function `org-babel-tangle-publish' allows for tangling during project publish
2010-04-11 23:58:44 -06:00
7cbb35920d
org-babel-c: new header argument ":main no" allows inhibiting main wrap
2010-04-10 15:54:40 -06:00
99a07f1d4a
org-babel-c: cleaning up header arguments
2010-04-10 15:43:31 -06:00
0e8c9f7a49
org-babel: no longer over evaluating header arguments
2010-04-10 15:43:19 -06:00
3386a702f8
org-babel: all languages now returning lists as pure emacs-lisp, not quoted emacs-lisp
2010-04-10 15:15:06 -06:00
59d499ff51
babel: Allow table to end neatly with terminal hline
...
Prior to this, a terminal hline would leave dangling empty cells:
#+TBLNAME: A
|---+---+---|
| a | b | c |
|---+---+---|
#+begin_src emacs-lisp :var tab=A
tab
#+end_src
#+results:
|---+---+---|
| a | b | c |
|---+---+---|
| | | |
2010-04-10 16:49:40 -04:00
8c827ba5ba
babel: Allow output tables to start with 'hline
2010-04-10 16:12:28 -04:00
98b4ae28a9
babel: allow lisp quoted expansion of variable values when starting with `
2010-04-09 19:06:07 -06:00
Eric Schulte
Nicolas Goaziou
Dan Davison
Michael Sperber
Carsten Dominik
Benjamin Andresen
Julien Barnier