* lisp/ob-core.el (org-babel-insert-result): Fix output when result is
an improper list, which cannot be turned into a table.
* testing/lisp/test-ob.el (test-ob/org-babel-insert-result--improper-lists):
New test.
Reported-by: Daniele Pizzolli <dan@toel.it>
<http://permalink.gmane.org/gmane.emacs.orgmode/95348>
* testing/lisp/test-ob.el (test-ob/remove-inline-result): Check that
whitespace in `src_emacs-lisp{1} {{{results(=1=)}}}.' is removed by
`org-babel-remove-inline-result', and that whitespace following the
macro (if any) is left intact.
* test/examples/babel.org: Miscellaneous fixes for new inline src
block schema. Return a scalar to avoid unwanted error. Return a raw
result from `src_emacs-lisp' to make checking results cleaner than
dealing with `results' macro.
* testing/lisp/test-ob-exp.el: Wrap some expected results in
`{{{results(' and ')}}}' and drop `=%s=' formatting of others.
* testing/lisp/test-ob-lob.el: Wrap some expected results in
`{{{results(' and ')}}}'.
* testing/lisp/test-ob.el: Wrap some expected results in `{{{results('
and ')}}}'.
* testing/lisp/test-ob.el
(test-org-babel/org-babel-get-inline-src-block-matches,
test-org-babel/inline-src_blk-results-silent): Tests of inline src
block matches (and `org-ctrl-ctrl-c') conform to the `:begin' and
`:end' properties of `org-element-context'.
* testing/lisp/test-ob.el
(test-org-babel/inline-src_blk-default-results-replace-line-1,
test-org-babel/inline-src_blk-default-results-replace-line-2):
Inline results are self replacing.
* lisp/ob-core.el (org-babel--script-escape-inner): New function.
(org-babel-script-escape): Use it.
* testing/lisp/test-ob.el (test-org-babel/script-escape): New test.
* testing/examples/babel.org: Change spaces to dashes in #+name
lines.
* testing/lisp/test-ob-exp.el (org-test-with-expanded-babel-code):
(ob-exp/evaluate-all-executables-in-order):
(ob-exp/exports-inline-code):
(ob-exp/exports-inline):
(ob-exp/exports-inline-code-double-eval):
(ob-exp/exports-inline-code-eval-code-once):
(ob-exp/exports-inline-code-double-eval-exports-both):
(ob-exp/use-case-of-reading-entry-properties):
(ob-exp/export-from-a-temp-buffer):
(ob-export/export-with-results-before-block):
(ob-export/export-under-commented-headline):
* testing/lisp/test-ob-lob.el (test-ob-lob/export-lob-lines):
* testing/lisp/test-ob.el (test-org-babel/inline-src_blk-default-results-replace-line-1):
(test-org-babel/inline-src_blk-default-results-replace-line-2):
(test-org-babel/inline-src_blk-manual-results-replace):
(test-org-babel/inline-src_blk-results-scalar):
(test-org-babel/inline-src_blk-results-verbatim):
(test-org-babel/inline-src_blk-preceded-punct-preceded-by-point):
* testing/lisp/test-ox.el (test-org-export/export-scope):
Bind ‘org-babel-inline-result-wrap’ and/or ‘org-export-babel-evaluate’
so tests work when users have customized these variables.
* testing/lisp/test-ob-exp.el (ob-export/export-with-results-before-block):
Add ‘org-trim’ where an extra newline was creeping in.
* testing/lisp/test-ob-lob.el (test-ob-lob/call-with-header-arguments):
Neutralize org-babel-insert-result, which was stomping on the buffer
contents and disrupting the test
* testing/lisp/test-org-element.el (test-org-element/block-switches):
Replace (should (and ...)) with multiple (should ...). This gives
more precise indications of what is wrong when a test fails.
(test-org-element/link-parser): Require org-docview.
* testing/lisp/test-org-timer.el (test-org-timer/other-timer-error):
Add the error type for ‘should-error’.
* testing/lisp/test-ox.el (test-org-export/set-title):
(test-org-export/handle-options):
(test-org-export/with-timestamps):
(test-org-export/comment-tree):
(test-org-export/handle-inlinetasks): Let
‘org-export-filter-body-functions’ and
‘org-export-filter-final-output-functions’ to nil where an empty
string is the expected result. ‘org-export-filter-apply-functions’
treats an empty string as special, and changes it to nil. This
creates test failures when the user has customized these variables.
* testing/org-test.el (org-test-with-temp-text): Let ‘org-mode-hook’
to nil.
(org-test-table-target-expect): Require ert since this function calls
some of its should* functions.
* lisp/ob-core.el (org-babel-where-is-src-block-head): Refactor. In
particular, do not return a marker, ever. Also update docstring.
* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--results-org):
Fix tests containing invalid Org syntax.
* lisp/ob-exp.el (org-babel-exp-inline-code-template): New
customizable variable to export inline source code (similar to
`org-babel-exp-code-template').
(org-babel-exp-code): New `type' argument to differentiate between
inline and standard code blocks.
* lisp/ob-core.el (org-babel-inline-src-block-regexp): Allow empty set
of switches and header arguments as in "src_sh[]{echo foo;}". Also
permit spaces before them.
* testint/lisp/test-org-element.el
(test-org-element/inline-src-block-parser): Test extended syntax for
inline source code.
* testing/lisp/test-ob-exp.el (ob-exp/exports-inline-code): New
function for testing inline source code handling. Also add three new
failing tests exhibiting unexpected results with ":results code"
switches.
* testing/lisp/test-ob.el
(test-org-babel/org-babel-get-inline-src-block-matches): Test for
inline source blocks with empty header arguments.
* testing/examples/babel.org: New sections for testing (i) exported
inline source code (used by `ob-exp/exports-inline-code'); (ii)
parsing inline source blocks with empty header arguments (used by
`test-org-babel/org-babel-get-inline-src-block-matches').
Until now pieces of inline source code were handled as standard code
blocks during export. These changes enable them to be exported.
* lisp/ob-core.el (org-babel-generate-file-param): New function.
(org-babel-get-src-block-info): Use it.
(org-babel-merge-params): Handle :file-ext.
(org-babel-graphical-output-file): error if no :file or :file-ext.
* testing/lisp/test-ob.el (test-org-babel/file-ext-and-output-dir):
New test.
* doc/org.texi (Specific header arguments): Add doc for :file-ext and
:output-dir header args.
* lisp/ob-R.el (org-babel-expand-body:R): Don’t calculate
graphics-file.
(org-babel-execute:R): Only look for a graphics-file if needed.
* lisp/ob-core.el (org-babel-exp-reference-buffer): New variable, as
a replacement for `org-current-export-file'.
(org-babel-check-confirm-evaluate): Use new variable.
* lisp/ob-exp.el (org-babel-exp-in-export-file): Use new variable.
(org-babel-exp-get-export-buffer): Remove function.
(org-babel-exp-process-buffer): Change signature.
* lisp/ob-ref.el (org-babel-ref-resolve): Use new variable during
export in order to properly resolve references.
* lisp/ox.el (org-export-execute-babel-code): Use new variable.
* contrib/lisp/org-wikinodes.el (org-wikinodes-process-links-for-export):
Remove a cond branch as it is always
false (`org-current-export-file' couldn't be a string).
* testing/lisp/test-ob-lob.el (test-ob-lob/export-lob-lines): Update
test.
* testing/lisp/test-ob.el (test-ob/eval-header-argument): Update test.
* testing/lisp/test-ob-exp.el (ob-export/reference-in-post-header):
New test.
During export, Babel executes sequentially all blocks in the buffer
being exported. This can lead to modifications preventing some
references from being resolved. As a workaround, Babel stores
a pristine copy of the buffer in a variable so it can always find
needed references.
Before this patch, the variable storing this copy was
`org-current-export-file' and was dynamically bound in "ox.el". It
was used to resolve noweb references (`org-babel-expand-noweb-references')
but not regular references (`org-babel-ref-resolve').
Now, the variable is `org-babel-exp-reference-buffer' and it is bound
from `org-babel-exp-process-buffer'. It is used to resolve all
references. In particular, this allows to use references in :post
header.
Thanks to Jarmo Hurri for reporting it.
* testing/lisp/test-ob.el: The default header arguments have added
'(hlines . yes)´ in commit c67e3cda15, also add them to the test so
that the two are consistent again.
* lisp/ob-core.el (org-babel-execute-src-block): Ensure that the
location is set before anything else is done.
* lisp/ob-ref.el (org-babel-ref-parse): Evaluate Emacs Lisp values in
header arguments at the location of the original code block.
* testing/lisp/test-ob.el (test-ob/location-of-header-arg-eval): Test
defending the new header argument evaluation behavior.
* org-test.el (org-test-with-temp-text-in-file): Wrap ,@body
into (progn ...) so that tests don't have to wrap it themselves.
Fix the testing suite to use this.
Also fix formatting and trailing whitespaces.
Fix test-org-src/blank-line-block so that it
checks editing of a code block with a whitespace
with point on the #+begin_src line.
Thanks to Michael Brand for spotting the (progn ...) problem.
* lisp/ob.el (org-babel-where-is-src-block-result): Insert new results
keyword in current narrowed part of buffer, if necessary. Small
refactoring.
(org-babel-insert-result): Do not widen buffer when new results have
to be inserted. Therefore, results inserted after the last block of
a narrowed buffer still belong to the narrowed part of the buffer.
* testing/lisp/test-ob.el: Add tests.
* testing/lisp/test-ob-exp.el: Move test to test-ob.el
* lisp/org-src.el (org-escape-code-in-string,
org-unescape-code-in-string, org-escape-code-in-region,
org-unescape-code-in-region): New functions.
(org-edit-src-code, org-edit-src-exit): Use new functions.
* lisp/org.el (org-strip-protective-commas): Removed function.
* lisp/org-exp.el (org-export-select-backend-specific-text): Use new
function.
* lisp/ob.el (org-babel-parse-src-block-match,
org-babel-parse-inline-src-block-match, org-babel-insert-result):
Always escape produced blocks, independently on the language of the
block, if any. Use new functions.
* doc/org.texi: Update documentation.
* testing/lisp/test-ob.el: Update test.
This reverts the last part of commit 22c3080830.
* testing/lisp/test-ob.el (test-ob/results-do-not-replace-code-blocks):
These two whitespace errors are intentional. Do not remove them.
* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--results-org):
BEGIN_ORG / END_ORG has been replaced by BEGIN_SRC org / END_SRC.
Change test comparison template accordingly.
* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--results-*):
These tests had duplicate definitions, removed the first one of each.
The current Emacs trunk bumped to version >24.2.50 because a new
release Emacs 24.2 has been decided. `cl-map' is not an alias for
`map' in Emacs < 24.2.50 -- so take this into account in some tests.
I started from the 78ec8e commit then cherry-picked and squashed
commits that have been done in master since then, except the bad
commits that overwrote the tree (in master) with the tree in maint.
This commit also bumps the version number to 7.8.06.
The only "fix" that was made between 78ec8e and the previous commit
is e0072f which has been reported to break stuff.
This fixes a wrong merge that should not have happened:
commit 7e903a merges the master branch into the maint branch,
while we really want to keep the maint branch a bugfix-only
branch.
This commit reverts back the maint branch to its state before
merging the master branch. From there, we will fix remaining
problems with the maint branch (e.g. copyright issues) then
release this maint branch as Org-mode 7.8.05.
* lisp/ob.el:
Fix `org-babel-result-end' command to provide consistent result
removal where result is type `wrap'. Prior to this fix
multiple (org-ctrl-c-ctrl-c) commands will add multiple newlines to
the end of results (one newline per block execution).
This fixes the test `test-ob/org-babel-remove-result--results-wrap'
* testing/lisp/test-ob.el:
Uncomment test since it now passes.
Conflicts:
testing/lisp/test-ob.el
Thanks to Martyn Jago for the test case
* lisp/ob.el (org-babel-balanced-split): Explicit checking if list
before calling member.
* testing/lisp/test-ob.el (test-ob/org-babel-balanced-split): Testing
the new Emacs22-proof behavior.
* lisp/ob.el:
Fix `org-babel-result-end' command to provide consistent result
removal where result is type `wrap'. Prior to this fix
multiple (org-ctrl-c-ctrl-c) commands will add multiple newlines to
the end of results (one newline per block execution).
This fixes the test `test-ob/org-babel-remove-result--results-wrap'
* testing/lisp/test-ob.el:
Uncomment test since it now passes.
* testing/examples/babel.org:
* testing/examples/table.org:
* testing/lisp/test-ob.el:
* testing/lisp/test-org-table.el:
Tests that used to write to a test-example file (ie testing/babel.org)
have been modified to write to temp files instead.
This avoids leaving open and /modified/ tests in Emacs when tests are
run by `org-test-run-all-tests'.
Thanks to Martyn Jago for the test case
* lisp/ob.el (org-babel-balanced-split): Explicit checking if list
before calling member.
* testing/lisp/test-ob.el (test-ob/org-babel-balanced-split): Testing
the new Emacs22-proof behavior.
Thanks to Martyn Jago for the test case
* lisp/ob.el (org-babel-balanced-split): Explicit checking if list
before calling member.
* testing/lisp/test-ob.el (test-ob/org-babel-balanced-split): Testing
the new Emacs22-proof behavior.
* lisp/ob-ref.el (org-babel-ref-split-args): Now uses
`org-babel-balanced-split'.
* testing/lisp/test-ob.el (test-ob/splitting-variable-lists-in-references):
Test new working behavior.
* lisp/ob.el (org-babel-expand-noweb-references): Fixed regexp.
* testing/lisp/test-ob.el (test-ob/noweb-expansion): Test both named
code block and noweb-ref header argument references.
* doc/org.texi (eval): Documenting the full range of :eval header
argument values.
* lisp/ob.el (org-babel-confirm-evaluate): Adding support for new
range of :eval header arguments.
* testing/lisp/test-ob.el (test-ob/eval-header-argument): Testing the
:eval header argument.
* lisp/ob-ref.el (org-babel-update-intermediate): New custom variable.
(org-babel-ref-resolve): Optionally update the in-buffer results of
code blocks which are evaluated to resolve references.
* lisp/ob.el (org-babel-join-splits-near-ch): Rejoins a list of a
split string when a character appears on either side of the split.
(org-babel-parse-multiple-vars): Rejoin splits around "=" signs.
* lisp/ob.el (org-babel-named-src-block-regexp-for-name): Ensure that
partial names are not matched.
(org-babel-named-data-regexp-for-name): Ensure that partial names
are not matched.
* testing/lisp/test-ob.el (test-ob/do-not-resolve-to-partial-names-data):
Test to ensure that partial names are not matched.
* lisp/ob-ref.el (org-babel-ref-resolve): Search for named code blocks
before named data.
* lisp/ob.el (org-babel-named-data-regexp-for-name): New function for
finding named data.
* testing/lisp/test-ob.el (test-ob/resolve-code-blocks-before-data-blocks):
Test to ensure that named references are resolved in the correct
order.
* lisp/ob-ref.el (org-babel-ref-resolve): Don't change location when
looking at the contents.
* testing/lisp/test-ob.el (test-ob/catches-all-references): Test
enforcing the correct behavior.
* lisp/ob.el (org-babel-find-named-result): Downcase "name" before comparison.
* testing/lisp/test-ob.el (test-ob/does-not-replace-a-block-with-the-results):
Test that named code blocks are replaced with their results.
* testing/lisp/test-ob.el (test-org-babel/nested-code-block):
Evaluation of a nested block.
(test-org-babel/partial-nested-code-block): Evaluation of a
partially nested block.
Nick Dokos <nicholas.dokos@hp.com> writes:
> Eric Schulte <schulte.eric@gmail.com> wrote:
>
>> The attached updated patch fixes a bug in the original.
>>
>
> Minor problem in applying:
>
> ,----
> | $ git apply ~/Mail/inbox/724
> | /home/nick/Mail/inbox/724:671: trailing whitespace.
> | #+name:
> | /home/nick/Mail/inbox/724:599: new blank line at EOF.
> | +
> | warning: 2 lines add whitespace errors.
> `----
The attached version fixes these issues, Thanks -- Eric
>From 0e43d59ee8d46a63f86780a502de726271bc39de Mon Sep 17 00:00:00 2001
From: Eric Schulte <schulte.eric@gmail.com>
Date: Fri, 28 Oct 2011 10:44:21 -0600
Subject: [PATCH] removing code block, results and call-line synonyms -- BREAKING CHANGE
Following a round of on-list discussion many code block synonyms have
been removed, moving forward the following syntax is valid.
- call lines are specified with #+call:
- code blocks are named with #+name:
- results are named with #+name:, however results generated by a code
block may still be labeled with #+results:, and tables named with
#+tblname: will be considered to be named results
The following function may be used to update an existing Org-mode
buffer to the new syntax.
(defun update-org-buffer ()
"Update an Org-mode buffer to the new data, code block and call line syntax."
(interactive)
(save-excursion
(flet ((to-re (lst) (concat "^[ \t]*#\\+" (regexp-opt lst t)
"\\(\\[\\([[:alnum:]]+\\)\\]\\)?\\:[ \t]*"))
(update (re new)
(goto-char (point-min))
(while (re-search-forward re nil t)
(replace-match new nil nil nil 1))))
(let ((old-re (to-re '("RESULTS" "DATA" "SRCNAME" "SOURCE")))
(lob-re (to-re '("LOB")))
(case-fold-search t))
(update old-re "name")
(update lob-re "call")))))
Note: If an old version of Org-mode (e.g., the one shipped with Emacs)
is installed on your system many of the important variables will
be pre-defined with a defvar and *will not* have their values
automatically updated, these include the following.
- org-babel-data-names
- org-babel-result-regexp
- org-babel-src-block-regexp
- org-babel-src-name-regexp
- org-babel-src-name-w-name-regexp
It may be necessary to either remove the source code of older
versions of Org-mode, or to explicitly evaluate the ob.el file.
* lisp/ob-exp.el (org-exp-res/src-name-cleanup): Updated
Documentation.
* lisp/ob-lob.el (org-babel-block-lob-one-liner-regexp): Updated
regular expression.
(org-babel-inline-lob-one-liner-regexp): Updated regular expression.
* lisp/ob-ref.el (org-babel-ref-resolve): Notice when something that
looks like a data results may actually be a code block.
* lisp/ob-table.el: Updated documentation.
* lisp/ob.el (org-babel-src-name-regexp): Simplified regexp.
(org-babel-get-src-block-info): Updated match strings.
(org-babel-data-names): Simplified acceptable names.
(org-babel-find-named-block): Indentation.
(org-babel-find-named-result): Updated to not return a code block as
a result.
* lisp/org.el (org-fontify-meta-lines-and-blocks-1): Removing
references to old syntactic elements.
(org-additional-option-like-keywords): Removing references to old
syntactic elements.
* contrib/babel/library-of-babel.org: Updated to make use of the new
syntax.
* testing/examples/babel-dangerous.org: Updated to make use of the new
syntax.
* testing/examples/babel.org: Updated to make use of the new syntax.
* testing/examples/ob-awk-test.org: Updated to make use of the new
syntax.
* testing/examples/ob-fortran-test.org: Updated to make use of the new
syntax.
* testing/lisp/test-ob.el: Removed two bad tests which tested the
literal values of old regular expressions rather than their
behavior.
* testing/examples/babel.org (an): Test the combination of code block
results wrapper and type.
* testing/lisp/test-ob.el (test-org-babel/combining-scalar-and-raw-result-types):
Test the combination of code block results wrapper and type.
Nicolas Goaziou
Charles Berry
Sebastien Vauban
Aaron Ecay
Nicolas Berthier
Nicolas Goaziou
Bastien Guerry
Eric Schulte
Achim Gratz
Sebastien Vauban
Eric Schulte
Martyn Jago
Sebastien Vauban