ac8c009e00
lisp/ob-R.el: Fix session output with substrings matching prompts
...
* lisp/ob-R.el (org-babel-R-evaluate-session): New implementation for session output
results, that concat "^" to comint-prompt-regexp to avoid prompt
confusion with R.
Patch suggested by Jack Kamm:
https://orgmode.org/list/87h7slgbi5.fsf@gmail.com/
2021-05-03 00:15:09 +02:00
e0fb2339f4
Merge branch 'km/from-emacs-master'
...
Porting from Emacs's master to Org's maint branch has been on hold
leading up to the Emacs 27.2 release to avoid any required fixup syncs
carrying those commits into the emacs-27 branch. This merge brings
those changes into master. The km/from-emacs-master branch should be
merged to maint when Emacs 27.2 has been released (assuming Org 9.5
hasn't been released, in which case maint will be tracking 9.5.x and
already include these changes).
2021-02-14 18:06:23 -05:00
d904f9e5da
Backport commit f88a7897a from Emacs
...
* lisp/ob-R.el (org-babel-R-write-object-command):
* lisp/org-attach.el (org-attach-after-change-hook):
* lisp/org.el (org-stamp-time-of-day-regexp): Shorten doc strings to
not exceed 80-column limits. (Bug#44858)
Shorten over-wide docstrings in variables
f88a7897a80ee9129bdc444cafff32d026c4b6d8
Stefan Kangas
Sat Dec 19 18:21:06 2020 +0100
2021-02-14 17:38:07 -05:00
0c6ab87d11
ob-R.el: For :results value return empty string instead of nil
2021-02-06 21:36:55 +01:00
291993888d
Merge branch 'maint'
2021-01-01 15:02:10 -05:00
99eafe3787
Update copyright year to 2021
2021-01-01 14:59:01 -05:00
36f4df8925
lisp/ob-R.el: Add Jeremie Juste as a maintainer
2020-10-26 10:52:12 +01:00
d9fe6aeafe
lisp/ob-R.el: Don't throw an error when result cannot be parsed
...
* lisp/ob-R.el (org-babel-R-process-value-result): When the result
cannot be parsed, return an error as the output.
Thanks to Greg Minshall for reporting this.
2020-05-24 16:08:52 +02:00
6a1f6ee1f8
Tiny formatting fixes
...
* lisp/ox.el (org-export-table-dimensions):
* lisp/ox-texinfo.el (org-texinfo-template):
* lisp/ox-md.el (org-md-link):
* lisp/ox-icalendar.el (org-icalendar-use-UTC-date-time-p):
* lisp/ox-ascii.el (org-ascii-fixed-width):
* lisp/org.el (org-context):
* lisp/org-table.el (org-table-eval-formula)
(org-table-export):
* lisp/org-refile.el:
* lisp/org-plot.el (org-plot/gnuplot-to-grid-data):
* lisp/org-num.el (org-num):
* lisp/org-mouse.el (org-mouse-popup-global-menu)
(org-mouse-context-menu):
* lisp/org-macro.el (org-macro):
* lisp/org-lint.el (org-lint):
* lisp/org-keys.el (org-keys):
* lisp/org-duration.el:
* lisp/org-clock.el (org-clock-get-last-clock-out-time)
(org-clock-update-mode-line, org-find-open-clocks):
* lisp/org-agenda.el (org-diary)
(org-agenda-check-for-timestamp-as-reason-to-ignore-todo-item)
(org-agenda-highlight-todo, org-cmp-alpha)
(org-agenda-filter-by-category):
* lisp/ol.el (org-link-expand-abbrev, ol):
* lisp/ol-docview.el (ol-docview):
* lisp/ol-bibtex.el (org-execute-file-search-in-bibtex)
(org-bibtex, org-bibtex-read):
* lisp/ol-bbdb.el (org-bbdb-anniversary-description):
* lisp/ob-tangle.el (org-babel-tangle-jump-to-org):
* lisp/ob-table.el (org-babel-table-truncate-at-newline):
* lisp/ob-stan.el:
* lisp/ob-sqlite.el (org-babel-sqlite-table-or-scalar):
* lisp/ob-sql.el:
* lisp/ob-shen.el:
* lisp/ob-shell.el (org-babel-prep-session:shell)
(org-babel-prep-session:shell):
* lisp/ob-sed.el (org-babel-execute:sed)
(org-babel-execute:sed):
* lisp/ob-screen.el:
* lisp/ob-sass.el:
* lisp/ob-ruby.el (org-babel-prep-session:ruby)
(org-babel-prep-session:ruby):
* lisp/ob-ref.el (org-babel-ref-resolve, ob-ref):
* lisp/ob-python.el (org-babel-prep-session:python)
(org-babel-prep-session:python):
* lisp/ob-plantuml.el:
* lisp/ob-picolisp.el:
* lisp/ob-perl.el:
* lisp/ob-org.el:
* lisp/ob-octave.el (org-babel-prep-session:octave)
(org-babel-prep-session:octave)
(org-babel-octave-evaluate-session):
* lisp/ob-ocaml.el:
* lisp/ob-mscgen.el (org-babel-execute:mscgen)
(org-babel-execute:mscgen):
* lisp/ob-maxima.el:
(ob-maxima):
* lisp/ob-matlab.el:
* lisp/ob-makefile.el:
* lisp/ob-lua.el (org-babel-prep-session:lua)
(org-babel-prep-session:lua):
* lisp/ob-lisp.el:
* lisp/ob-ledger.el:
* lisp/ob-latex.el (org-babel-expand-body:latex)
(org-babel-expand-body:latex, ob-latex):
* lisp/ob-js.el:
* lisp/ob-java.el:
* lisp/ob-io.el (org-babel-prep-session:io)
(org-babel-prep-session:io):
* lisp/ob-hledger.el:
* lisp/ob-haskell.el:
* lisp/ob-groovy.el (org-babel-groovy-wrapper-method)
(org-babel-groovy-evaluate):
* lisp/ob-gnuplot.el:
* lisp/ob-fortran.el (org-babel-expand-body:fortran)
(org-babel-expand-body:fortran):
* lisp/ob-forth.el (org-babel-forth-session-execute):
* lisp/ob-exp.el (ob-exp):
* lisp/ob-eval.el:
* lisp/ob-emacs-lisp.el:
* lisp/ob-ebnf.el:
* lisp/ob-dot.el:
* lisp/ob-ditaa.el:
* lisp/ob-css.el:
* lisp/ob-core.el (org-babel-put-rownames):
* lisp/ob-coq.el:
* lisp/ob-comint.el:
* lisp/ob-calc.el:
* lisp/ob-awk.el:
* lisp/ob-asymptote.el:
* lisp/ob-abc.el:
* lisp/ob-R.el (org-babel-prep-session:R): Formatting fixes.
2020-02-18 22:57:37 +01:00
ff5fc050d3
Update copyright year to 2020
2020-01-01 13:38:46 -05:00
f584d37a67
Update copyright year
2019-01-01 11:50:56 +01:00
b289a65be7
Use https for links to orgmode.org
...
TINYCHANGE
2018-01-19 18:14:58 +01:00
3e1641ef0a
Update copyright years
2018-01-07 00:27:54 -05:00
ff0dcf52a5
Backport commit bc511a64f from Emacs
...
Prefer HTTPS to FTP and HTTP in documentation
bc511a64f6da9ab51acc7c8865e80c4a4cb655c2
Paul Eggert
Wed Sep 13 15:54:37 2017 -0700
2017-09-17 00:28:38 -04:00
0d3683f2cd
Merge branch 'maint'
2017-01-05 20:23:58 -05:00
713f785017
Update copyright years
2017-01-05 20:19:37 -05:00
ed0c8cb995
org-babel-execute:R fix `:colnames yes' clash with `:results graphics'
...
* lisp/ob-R.el (org-babel-execute:R): The `:colnames' and `:rownames'
header arguments are ignored if `:results graphics' is specified.
Reported by: Kodi Arfer <kodi@arfer.net>
Archived-At: <http://permalink.gmane.org/gmane.emacs.orgmode/111072 >
2016-12-28 18:35:59 -08:00
79650ffbbd
Use assq instead of assoc for :keywords
...
* lisp/ob-C.el (org-babel-C-execute):
* lisp/ob-J.el (org-babel-execute:J):
* lisp/ob-R.el (org-babel-edit-prep:R):
(org-babel-expand-body:R):
(org-babel-execute:R):
(org-babel-variable-assignments:R):
(org-babel-R-initiate-session):
* lisp/ob-abc.el (org-babel-execute:abc):
* lisp/ob-asymptote.el (org-babel-execute:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-clojure.el (org-babel-expand-body:clojure):
(org-babel-execute:clojure):
* lisp/ob-core.el (org-babel-expand-body:generic):
(org-babel-load-in-session):
(org-babel-initiate-session):
(org-babel-open-src-block-result):
(org-babel-process-params):
(org-babel-insert-result):
(org-babel-expand-noweb-references):
* lisp/ob-ditaa.el (org-babel-execute:ditaa):
* lisp/ob-dot.el (org-babel-execute:dot):
* lisp/ob-ebnf.el (org-babel-execute:ebnf):
* lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp):
(org-babel-execute:emacs-lisp):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
(org-babel-exp-do-export):
(org-babel-exp-code):
* lisp/ob-forth.el (org-babel-execute:forth):
* lisp/ob-fortran.el (org-babel-execute:fortran):
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars):
(org-babel-expand-body:gnuplot):
(org-babel-execute:gnuplot):
* lisp/ob-groovy.el (org-babel-execute:groovy):
* lisp/ob-haskell.el (org-babel-execute:haskell):
* lisp/ob-io.el (org-babel-execute:io):
* lisp/ob-java.el (org-babel-execute:java):
* lisp/ob-js.el (org-babel-execute:js):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/ob-ledger.el (org-babel-execute:ledger):
* lisp/ob-lilypond.el (org-babel-lilypond-process-basic):
* lisp/ob-lisp.el (org-babel-expand-body:lisp):
(org-babel-execute:lisp):
* lisp/ob-lua.el (org-babel-execute:lua):
* lisp/ob-maxima.el (org-babel-execute:maxima):
* lisp/ob-mscgen.el (org-babel-execute:mscgen):
* lisp/ob-ocaml.el (org-babel-execute:ocaml):
* lisp/ob-octave.el (org-babel-execute:octave):
* lisp/ob-org.el (org-babel-execute:org):
* lisp/ob-perl.el (org-babel-execute:perl):
* lisp/ob-picolisp.el (org-babel-execute:picolisp):
* lisp/ob-plantuml.el (org-babel-execute:plantuml):
* lisp/ob-python.el (org-babel-execute:python):
* lisp/ob-ruby.el (org-babel-execute:ruby):
* lisp/ob-sass.el (org-babel-execute:sass):
* lisp/ob-scala.el (org-babel-execute:scala):
* lisp/ob-scheme.el (org-babel-execute:scheme):
* lisp/ob-screen.el (org-babel-execute:screen):
(org-babel-prep-session:screen):
* lisp/ob-shell.el (org-babel-execute:shell):
(org-babel-variable-assignments:shell):
(org-babel-sh-evaluate):
* lisp/ob-shen.el (org-babel-execute:shen):
* lisp/ob-sql.el (org-babel-execute:sql):
* lisp/ob-sqlite.el (org-babel-execute:sqlite):
* lisp/ob-tangle.el (org-babel-tangle):
(org-babel-tangle-single-block):
* lisp/org-src.el (org-src-associate-babel-session):
* lisp/org.el (org-next-link):
Use `assq' instead of `assoc' with :keyword keys.
2016-09-23 11:20:09 +01:00
ab21e2b72d
Use file-name-extension where appropriate
...
* lisp/ob-R.el (org-babel-R-construct-graphics-device-call):
* lisp/ob-asymptote.el (org-babel-execute:asymptote):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/org-agenda.el (org-agenda-write):
* lisp/ox-odt.el (org-odt--copy-formula-file): Use `file-name-extension'
instead of string munging.
2016-09-01 18:46:48 +01:00
6b52bc6a21
Clean up string handling.
...
* lisp/org-compat.el (string-prefix-p, string-suffix-p):
Add compatibility definitions for 24.3.
* lisp/ob-R.el (org-babel-edit-prep:R):
* lisp/ob-core.el (org-babel-demarcate-block):
* lisp/ob-js.el (org-babel-js-read):
* lisp/ob-latex.el (org-babel-execute:latex):
* lisp/ob-ref.el (org-babel-ref-parse):
* lisp/ob-shell.el (org-babel-variable-assignments:shell):
* lisp/org-protocol.el (org-protocol-create):
* lisp/org-table.el (org-table-field-info):
* lisp/org.el (org-get-buffer-for-internal-link):
* lisp/ox-publish.el (org-publish-compare-directory-files):
* lisp/ox-texinfo.el (org-texinfo-template):
Use `string-{suffix,prefix}-p' instead of `string-match(-p)'.
* lisp/ob-python.el (org-babel-python-read-string):
Ditto, also use `substring' rather than `match-string'.
* lisp/org-table.el (org-table-copy-down):
(org-table-insert-hline, org-table-current-field-formula):
(org-table-get-formula): Use `string-match-p' instead of
`string-match'.
2016-08-24 16:05:54 +01:00
31b30e5aee
ob-R: Silence byte-compiler
...
* lisp/ob-R.el (org-babel-R-evaluate-external-process):
(org-babel-R-evaluate-session): Silence byte-compiler.
2016-07-25 16:24:14 +02:00
d13b0745dc
Mark a few functions as obsolete
...
* lisp/ob-R.el (org-babel-variable-assignments:R):
* lisp/ob-ref.el (org-babel-ref-goto-headline-id):
* lisp/org-agenda.el (org-agenda-prepare-window):
(org-agenda-switch-to):
* lisp/org-capture.el (org-capture-goto-target):
* lisp/org-clock.el (org-clock-goto):
(org-clock-special-range):
* lisp/org-ctags.el (org-ctags-visit-buffer-or-file):
* lisp/org-eshell.el (org-eshell-open):
* lisp/org-feed.el (org-feed-show-raw-feed):
* lisp/org-id.el (org-id-goto):
* lisp/org-irc.el (org-irc-visit-erc):
* lisp/org-macs.el (org-string-nw-p):
* lisp/org-mobile.el (org-mobile-apply):
* lisp/org-src.el (org-src-switch-to-buffer):
* lisp/org.el (org-get-location):
(org-tree-to-indirect-buffer):
(org-mark-ring-goto):
(org-refile):
(org-add-log-note):
(org-revert-all-org-buffers):
(org-switchb):
(org-cycle-agenda-files):
(org-submit-bug-report):
(org-goto-marker-or-bmk):
* lisp/ox-html.el (org-html-htmlize-generate-css): Silence byte
compiler.
The following functions are marked as obsolete:
- `org-string-match-p'
- `org-number-sequence'
- `org-floor*'
- `org-pop-to-buffer-same-window'
- `org-delete-directory'
- `org-buffer-narrowed-p'
2016-06-23 10:00:00 +02:00
4925d5be7b
Merge branch 'maint'
2016-05-15 19:00:30 -04:00
19cf68da90
Fix remaining declare-function issues
...
* lisp/ob-shell.el (org-babel-comint-in-buffer):
(org-babel-comint-with-output):
* lisp/org-table.el (org-export-create-backend):
* lisp/org.el (org-babel-do-in-edit-buffer): Indicate that FN is not a
defun.
* lisp/ob-tangle.el (org-string-nw-p):
* lisp/org-table.el (org-export-create-backend):
(org-export-data-with-backend):
(org-export-filter-apply-functions):
(org-export-first-sibling-p):
(org-export-get-backend):
(org-export-get-environment):
(org-export-install-filters):
(org-export-table-has-special-column-p):
(org-export-table-row-is-special-p): Correct source file name.
* lisp/ob-R.el (ess-wait-for-process):
* lisp/org-clock.el (calendar-iso-to-absolute):
* lisp/org-list.el (org-previous-line-empty-p):
* lisp/org-pcomplete.el (org-entry-properties):
* lisp/org-table.el (org-export-data-with-backend):
(org-export-get-environment):
* lisp/org.el (org-element-interpret-data): Correct argument list.
2016-05-15 18:59:20 -04:00
7213aa0f76
ob-R: Silence byte-compiler
...
* lisp/ob-R.el (org-babel-expand-body:R): Silence byte-compiler.
2016-02-02 18:02:08 +01:00
4d02140130
lisp/ob-R.el: Rename graphics-file arg of org-babel-expand-body:R.
...
* lisp/ob-R.el: (org-babel-expand-body:R) The third arg is now
`graphics-file' with no `&' prefix, so edebug can instrument it.
2016-02-01 19:48:49 -08:00
3142d139fa
ob-R.el: Trim extraneous newline from results
...
* lisp/ob-R.el: org-babel-R-evaluate-external-process and
org-babel-R-evaluate-session trim the extraneous newlines from the
end of R output.
* testing/lisp/test-ob-R.el: test-ob-R/results-file tests that
`:results file' yields one line enclosed in square brackets for a
result like "abc/def.ghi".
Fixes issue noted by Andreas Leha
Subject: [babel] return file from R
Archived-At: <http://permalink.gmane.org/gmane.emacs.orgmode/103658 >
2016-01-19 20:10:43 -08:00
6345de2d05
Merge branch 'maint'
2016-01-09 17:43:27 -05:00
6bc48c5f41
Update copyright years
2016-01-09 17:12:03 -05:00
27aa7b3f1e
ob-R.el: org-babel-R-evaluate-session finds prompts more reliably
...
* lisp/ob-R.el (org-babel-R-evaluate-session) should find prompts more
reliably. First, the regular expression used requires spacing
between and after instances of `[>+.]'. Also, the search terminates
at the first `\n', so complicated results with prompt like strings
in them are not deleted.
Prompt finding is necessarily heuristic. It may be necessary to render
the regular expression with a defcustom as is done in ess-mode.
2015-11-07 13:26:11 -08:00
e4cd3dd22b
Remove some home-grown copies of cl-lib functions.
...
* lisp/org.el (org-count, org-remove-if, org-remove-if-not):
(org-reduce, org-every, org-some): Obsolete, use cl-lib versions
everywhere.
(org-sublist): Reimplement in terms of `cl-subseq'; make obsolete.
2015-11-06 12:50:40 +00:00
0d000f5680
babel: small change in API.
...
* lisp/ob-core.el (org-babel--get-vars): New function.
(org-babel-get-header): Delete.
* lisp/ob-C.el (org-babel-C-expand-C):
(org-babel-C-expand-D):
* lisp/ob-R.el (org-babel-variable-assignments:R):
* lisp/ob-abc.el (org-babel-expand-body:abc):
* lisp/ob-asymptote.el (org-babel-variable-assignments:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-calc.el (org-babel-execute:calc):
* lisp/ob-clojure.el (org-babel-expand-body:clojure):
* lisp/ob-dot.el (org-babel-expand-body:dot):
* lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp):
* lisp/ob-fortran.el (org-babel-expand-body:fortran):
(org-babel-fortran-ensure-main-wrap):
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars):
* lisp/ob-haskell.el (org-babel-variable-assignments:haskell):
* lisp/ob-js.el (org-babel-variable-assignments:js):
* lisp/ob-latex.el (org-babel-expand-body:latex):
* lisp/ob-lilypond.el (org-babel-expand-body:lilypond):
* lisp/ob-lisp.el (org-babel-expand-body:lisp):
* lisp/ob-maxima.el (org-babel-maxima-expand):
* lisp/ob-ocaml.el (org-babel-variable-assignments:ocaml):
* lisp/ob-octave.el (org-babel-variable-assignments:octave):
* lisp/ob-org.el (org-babel-expand-body:org):
* lisp/ob-perl.el (org-babel-variable-assignments:perl):
* lisp/ob-picolisp.el (org-babel-expand-body:picolisp):
* lisp/ob-processing.el (org-babel-variable-assignments:processing):
* lisp/ob-python.el (org-babel-variable-assignments:python):
* lisp/ob-ruby.el (org-babel-variable-assignments:ruby):
* lisp/ob-scheme.el (org-babel-expand-body:scheme):
* lisp/ob-shell.el (org-babel-variable-assignments:shell):
* lisp/ob-shen.el (org-babel-expand-body:shen):
* lisp/ob-sql.el (org-babel-expand-body:sql):
* lisp/ob-sqlite.el (org-babel-expand-body:sqlite): Adapt to change.
* etc/ORG-NEWS: Document change.
2015-10-29 19:26:11 +00:00
f0bf77e82a
Activate lexical binding in some libraries
...
* lisp/ob-C.el (org-babel-prep-session:C):
(org-babel-load-session:C):
* lisp/ob-J.el:
(org-babel-expand-body:J):
(org-babel-execute:J):
* lisp/ob-R.el:
(org-babel-expand-body:R):
* lisp/ob-abc.el:
(org-babel-execute:abc):
(org-babel-prep-session:abc):
* lisp/ob-asymptote.el:
(org-babel-execute:asymptote):
(org-babel-prep-session:asymptote):
* lisp/ob-awk.el:
(org-babel-expand-body:awk):
* lisp/ob-calc.el:
(org-babel-expand-body:calc):
* lisp/ob-clojure.el:
* lisp/ob-comint.el:
(org-babel-comint-in-buffer):
(org-babel-comint-with-output):
(org-babel-comint-eval-invisibly-and-wait-for-file):
* lisp/ob-coq.el:
* lisp/ob-css.el:
(org-babel-execute:css):
(org-babel-prep-session:css):
* lisp/ob-ditaa.el:
(org-babel-execute:ditaa):
(org-babel-prep-session:ditaa):
* lisp/ob-dot.el:
(org-babel-execute:dot):
(org-babel-prep-session:dot):
* lisp/ob-ebnf.el:
* lisp/ob-emacs-lisp.el:
* lisp/ob-eval.el:
* lisp/ob-forth.el:
* lisp/ob-fortran.el:
(org-babel-execute:fortran):
(org-babel-prep-session:fortran):
(org-babel-load-session:fortran):
* lisp/ob-gnuplot.el:
(org-babel-expand-body:gnuplot):
(org-babel-prep-session:gnuplot):
(org-babel-gnuplot-initiate-session):
* lisp/ob-groovy.el:
(org-babel-prep-session:groovy):
(org-babel-groovy-initiate-session):
* lisp/ob-haskell.el:
(org-babel-haskell-initiate-session):
* lisp/ob-io.el:
(org-babel-prep-session:io):
(org-babel-io-initiate-session):
* lisp/ob-java.el:
(org-babel-execute:java):
* lisp/ob-js.el:
* lisp/ob-keys.el:
* lisp/ob-latex.el:
(org-babel-prep-session:latex):
* lisp/ob-ledger.el:
(org-babel-execute:ledger):
(org-babel-prep-session:ledger):
* lisp/ob-lilypond.el:
(org-babel-lilypond-commands):
(org-babel-lilypond-process-basic):
(org-babel-prep-session:lilypond):
(org-babel-lilypond-parse-line-num):
* lisp/ob-lisp.el:
* lisp/ob-makefile.el:
(org-babel-execute:makefile):
(org-babel-prep-session:makefile):
* lisp/ob-matlab.el:
* lisp/ob-maxima.el:
(org-babel-prep-session:maxima):
* lisp/ob-mscgen.el:
(org-babel-prep-session:mscgen):
* lisp/ob-ocaml.el:
(org-babel-execute:ocaml):
(org-babel-prep-session:ocaml):
* lisp/ob-octave.el:
(org-babel-execute:octave):
(org-babel-octave-initiate-session):
* lisp/ob-org.el:
(org-babel-prep-session:org):
* lisp/ob-perl.el:
(org-babel-prep-session:perl):
(org-babel-perl--var-to-perl):
(org-babel-perl-initiate-session):
* lisp/ob-picolisp.el:
(org-babel-expand-body:picolisp):
(org-babel-execute:picolisp):
* lisp/ob-plantuml.el:
(org-babel-execute:plantuml):
(org-babel-prep-session:plantuml):
* lisp/ob-processing.el:
(org-babel-prep-session:processing):
* lisp/ob-python.el:
(org-babel-python-initiate-session):
* lisp/ob-ref.el:
(org-babel-ref-resolve):
* lisp/ob-ruby.el:
(org-babel-ruby-initiate-session):
* lisp/ob-sass.el:
(org-babel-execute:sass):
(org-babel-prep-session:sass):
* lisp/ob-scala.el:
(org-babel-execute:scala):
(org-babel-prep-session:scala):
(org-babel-scala-initiate-session):
* lisp/ob-scheme.el:
* lisp/ob-screen.el:
(org-babel-prep-session:screen):
(org-babel-screen-session-write-temp-file):
(org-babel-screen-test):
* lisp/ob.el:
* lisp/org-colview.el:
(org-columns-todo):
(org-columns-set-tags-or-toggle):
(org-columns-new):
(org-columns-uncompile-format):
(org-agenda-colview-summarize):
* lisp/org-footnote.el:
(electric-indent-mode):
* lisp/org-indent.el:
(org-indent-refresh-maybe):
* lisp/org-list.el:
* lisp/org-macro.el:
(org-macro--collect-macros):
* lisp/org-src.el:
* lisp/org-table.el:
(sort-fold-case):
(org-table-create):
(org-table-field-info):
(org-table-transpose-table-at-point):
(org-table-remove-rectangle-highlight):
(orgtbl-create-or-convert-from-region):
(org-define-lookup-function):
* lisp/ox-ascii.el:
(org-ascii-format-drawer-function):
(org-ascii--has-caption-p):
(org-ascii-bold):
(org-ascii-center-block):
(org-ascii-clock):
(org-ascii-code):
(org-ascii-dynamic-block):
(org-ascii-entity):
(org-ascii-example-block):
(org-ascii-export-snippet):
(org-ascii-export-block):
(org-ascii-fixed-width):
(org-ascii-footnote-reference):
(org-ascii-horizontal-rule):
(org-ascii-inline-src-block):
(org-ascii-format-inlinetask-default):
(org-ascii-italic):
(org-ascii-keyword):
(org-ascii-latex-environment):
(org-ascii-latex-fragment):
(org-ascii-line-break):
(org-ascii-node-property):
(org-ascii-planning):
(org-ascii-quote-block):
(org-ascii-radio-target):
(org-ascii-special-block):
(org-ascii-src-block):
(org-ascii-statistics-cookie):
(org-ascii-subscript):
(org-ascii-superscript):
(org-ascii-strike-through):
(org-ascii-timestamp):
(org-ascii-underline):
(org-ascii-verbatim):
(org-ascii-verse-block):
(org-ascii-filter-headline-blank-lines):
(org-ascii-filter-paragraph-spacing):
(org-ascii-filter-comment-spacing): Use lexical binding.
2015-10-26 01:56:00 +01:00
0839dc4322
Protect remaining apostrophes in docstrings
...
Protect apostrophes not covered by the last backport. Convert
expressions like '(...) to \\='(...) and symbols written as 'name to
`name'. (In addition to ensuring the correct display, the latter also
improves consistency with many Org docstrings.)
If these aren't protected, Emacs 25 may display them as curved quotes in
the help buffer, depending on the value of text-quoting-style.
2015-09-21 18:38:39 -04:00
c8bfd52f5f
ob-R: Allow more :results values
...
* lisp/ob-R.el (org-babel-header-args:R): Allow "drawer" and "none",
since they are supported in `org-babel-common-header-args-w-values'.
Reported-by: Andreas Leha <andreas.leha@med.uni-goettingen.de>
<http://permalink.gmane.org/gmane.emacs.orgmode/97683 >
2015-05-19 23:22:11 +02:00
0d24086657
Update some copyright years
2015-02-16 01:40:07 +01:00
3996de60da
ob-R: Convert some defvars to defconsts.
...
* lisp/ob-R.el (org-babel-R-eoe-indicator):
(org-babel-R-eoe-output): Convert from defvar to defconst.
(org-babel-R-write-object-command): Convert from defvar to defconst.
Add line breaks and indentation.
2015-01-23 14:39:30 -05:00
fcce67cdeb
ob-R: fix interaction with ESS for new sessions
...
* lisp/ob-R.el (org-babel-R-initiate-session): Properly wait on a new
ESS process.
2014-10-10 12:35:57 -04:00
780db69cdf
ob-R.el: Add package name to read.table call
...
* lisp/ob-R.el: (ob-R-transfer-variable-table-with-header)
(ob-R-transfer-variable-table-without-header): Add package name to
call of R function `read.table'.
Thus, it now reads `utils::read.table'. This clarifies the call as
well as avoids "could not find function" error in R with the devtools
package. See
<https://github.com/hadley/devtools/issues/336#issuecomment-23517837 >.
2014-10-10 00:16:31 -04:00
37e1a11b9e
ob-R: declare ess-current-process-name
...
* lisp/ob-R.el: Forward declare `ess-current-process-name'.
2014-09-19 12:03:43 +02:00
e5f61642a3
ob-R: make it work with older ESS versions
...
* lisp/ob-R.el (org-babel-R-initiate-session): The PROC argument is
mandatory for older ESS versions.
2014-09-18 21:56:53 +02:00
0fd29a5ee7
lisp/ob-R.el: use `ess-wait-for-process' to assure clean session startup
...
* lisp/ob-R.el (org-babel-R-initiate-session): Make sure that (R) has
finished before `rename-buffer' is run.
TINYCHANGE
2014-09-17 21:10:40 -04:00
2cbaa47fcc
ob-R: Fix redundant code.
...
* lisp/ob-R.el (org-babel-R-check-evaluate-package): Fix redundant
code.
2014-08-16 00:48:10 -04:00
59cd25cd75
Revert "ob-R.el: Improve the capturing of output-type results in sessions."
...
This reverts commit b51746332d
2014-08-07 14:00:01 -04:00
b51746332d
ob-R.el: Improve the capturing of output-type results in sessions.
...
* lisp/ob-R.el (org-babel-R-evaluate-session): Improve the capturing
of R output.
This uses a built-in facility of R to write the output to a file,
rather than trying to capture it in an emacs buffer using ESS (a
process by which the output can get mixed with other irrelevant text,
such as R command prompts).
2014-08-07 01:54:23 -04:00
d035c14765
ob-R.el: fix a bug when a :var is propertized text
...
* lisp/ob-R.el (org-babel-R-assign-elisp): Strip text properties from
strings.
Before this change, babel would try to format propertized strings
using elisp read syntax. The upshot is that evaluating the following
code block would give an error (in R, not emacs), since the “bar” in
foo-ex gets text properties via font lock:
| #+name: foo-ex
| #+begin_example
| bar
| #+end_example
|
| #+name: foo
| #+begin_src R :var foo=foo-ex
| foo
| #+end_src
2014-08-07 01:54:23 -04:00
8f3a1f3d22
Fix trailing whitespace in previous commit
2014-07-28 00:01:23 +02:00
4c415f38a5
Make transfer of values from R type aware
...
* lisp/ob-R.el (org-babel-R-assign-elisp): Add different cases for
transfering integer, float, string and other variables to R so that
integer values are transferred as integers (L) and stored in R as
such. This change is backward compatible as integer values are
numerical values in R.
Moved definition of R functions for transfer of tables into defconst
ob-R-transfer-variable-table-with-header and
ob-R-transfer-variable-table-without-header.
2014-07-28 00:01:00 +02:00
fdfb59454a
lisp/ob-R.el: Fix tangling with tables
...
* lisp/ob-R.el (org-babel-R-assign-elisp): Fix variable transfer of
tables by using text connections in R instead of files. Variable
transfer of tables does not depend on files anymore, i.e. works also
when tangling.
2014-07-28 00:00:52 +02:00
a5686d8778
ob-R.el: minor code cleanup
...
* ob-R.el (org-babel-expand-body:R, org-babel-execute:R)
(org-babel-variable-assignments:R)
(org-babel-R-evaluate-session): Don't use "#'" forms.
2014-05-21 04:22:30 +02:00
Jeremie Juste
Kyle Meyer
Stefan Kangas
Bastien
Tim Landscheidt
Paul Eggert
Charles Berry
Aaron Ecay
Nicolas Goaziou
Rainer M. Krug
Achim Gratz
Bastien Guerry