Commit Graph

187 Commits

Author SHA1 Message Date
Ihor Radchenko 54c2327f3a Allow :var header args to be assigned to cons cells
* lisp/ob-core.el (org-babel-disassemble-tables,
org-babel-gnuplot-process-vars): Use `proper-list-p' check instead of
`listp'.
(org-babel-disassemble-tables): Check list length before trying to
remove hline from a table assignment.
* testing/lisp/test-ob.el (test-ob/cons-cell-as-variable): Add the
test.
2021-09-26 10:21:20 +02:00
Stefan Kangas 8cc992f7b2 Prefer HTTPS to HTTP for links to gnu.org 2021-03-21 14:29:13 -04:00
Matt Huszagh d9884cfa70 lisp/ob-core.el: Allow passing empty vector to :file-desc to omit description
* doc/org-manual.org (Type): Document empty vector argument for
file-desc.
* etc/ORG-NEWS (New argument for ~file-desc~ babel header): Add entry
to NEWS.
* lisp/ob-core.el (org-babel--file-desc): Add new function to evaluate
file description value.
(org-babel-execute-src-block): Correctly evaluate file description
when executing src block.
(org-babel-insert-result): Correctly evaluate file description value
when inserting the result of src block execution into the buffer.
* testing/lisp/test-ob.el (test-ob/file-desc-header-argument): Add
test case for new behavior.
2020-10-06 23:13:12 -04:00
Bastien 3e191242dc Fix tests wrt 2f53429413
* testing/lisp/test-ob.el (test-ob/inline-src_blk-default-results-replace-line-1)
(test-ob/just-one-results-block)
(test-ob/org-babel-remove-result--results-default)
(test-ob/specific-colnames): Fix tests.

* testing/lisp/test-ob-tangle.el (ob-tangle/comment-links-at-left-margin): Ditto.

* testing/lisp/test-ob-shell.el (ob-shell/generic-uses-no-arrays)
(ob-shell/bash-uses-arrays)
(ob-shell/generic-uses-no-assoc-arrays)
(ob-shell/bash-uses-assoc-arrays, ob-shell/simple-list): Ditto.

* testing/lisp/test-ob-exp.el (ob-exp/exports-inline)
(ob-exp/exports-inline-code): Ditto.

* testing/examples/ob-shell-test.org (Generic shell: no arrays)
(Bash shell: support for arrays)
(Generic shell: no special handing)
(Bash shell: support for associative arrays)
(Generic shell: no special handing)
(Bash shell: support for associative arrays with lists): Ditto.
2020-09-06 22:37:32 +02:00
Kyle Meyer d4f48821c1 Merge branch 'maint' into master 2020-09-05 23:41:50 -04:00
Kyle Meyer f24c3d11cc ob-core: Test that org-confirm-babel-evaluate does not see coderefs
* testing/lisp/test-ob.el (test-ob/check-eval-noweb-expanded): Add
test.

With df5a83637 (ob-core: Call org-confirm-babel-evaluate with expanded
noweb refs, 2020-08-02), org-confirm-babel-evaluate gets called with
an expanded body and coderefs.  As of the last commit, the coderefs
are stripped.

Cf: https://orgmode.org/list/CA+G3_PPYS2KAaXiBDeujTTpswCTzTuJRQsXwaji1MuRoc8N7vw@mail.gmail.com
2020-09-05 23:38:43 -04:00
Kyle Meyer 7bc18ebbed ob-core: Avoid table conversion warning for empty results
* lisp/ob-core.el (org-babel-import-elisp-from-file): Don't try to
convert empty file to a table.
* testing/lisp/test-ob.el (test-ob/import-elisp-from-file): Add tests.

If org-babel-import-elisp-from-file is called with an empty file
(which many ob- libraries do when there are no results), feeding that
to org-table-import leads to a beginning-of-buffer error.  Before
14878f3f9 (ob-core: Display warning on failure to read results,
2020-05-21), this error was hard to notice because, after catching it,
it was reported as a quickly buried message.  After that commit, it is
displayed as a warning, which is not appropriate for the common and
unproblematic case of empty results.

Avoid the warning by only doing the table conversion if the file has
content.  Another option would be to do the table conversion but add a
beginning-of-buffer arm to the surrounding condition-case.  However,
that risks swallowing other sources of that error.

Reported-by: Colin Baxter <m43cap@yandex.com>
<https://orgmode.org/list/878se3nhbj.fsf@yandex.com>
2020-09-01 00:02:49 -04:00
John Herrlin ea946353aa ob-core: file-mode option in source code block arguments
* ob-core.el (org-babel-execute-src-block): Source code block header
argument `:file-mode' can set file permissions if `:file' argument is
provided.
(org-babel-common-header-args-w-values): Add `:file-mode' to common
header arguments.

TINYCHANGE
2020-08-02 22:59:25 -04:00
Kyle Meyer a103f3f3ee Merge branch 'maint' 2020-08-02 22:56:03 -04:00
Kyle Meyer df5a836375 ob-core: Call org-confirm-babel-evaluate with expanded noweb refs
* lisp/ob-core.el (org-babel-check-confirm-evaluate): Expand noweb
references in the body passed to org-confirm-babel-evaluate.
* testing/lisp/test-ob.el (test-ob/check-eval-noweb-expanded): New
test.

When noweb references are set to be expanded for evaluation,
org-confirm-babel-evaluate should receive the expanded body so that it
can make its decision based on what actually will be evaluated
(without resorting to calling org-babel-get-src-block-info itself).

Note that this results in up to three calls to
org-babel-expand-noweb-references.  Possible ways to avoid this are
discussed at the thread referenced below.

Reported-by: Tom Gillespie <tgbugs@gmail.com>
https://orgmode.org/list/CA+G3_PNi3uMvBiWgBdKuC3C6VJt1T1j-RKH43LRqYbr+4NS8ZA@mail.gmail.com/
2020-08-02 22:55:16 -04:00
Nicolas Goaziou 89c759f3ad ob: Replace angle brackets with parenthesis in Babel hashes
* lisp/ob-core.el (org-babel-hash-show-time): Remove
unnecessary :version keyword.
(org-babel-result-regexp):
(org-babel--insert-results-keyword): Remove angle brackets from time
stamp in hash.
* testing/lisp/test-ob.el (test-ob/where-is-src-block-result): Update
test.

Reported-by: stardiviner <numbchild@gmail.com>
<http://lists.gnu.org/r/emacs-orgmode/2020-05/msg00198.html>
2020-05-13 15:35:56 +02:00
Nicolas Goaziou 06fe9d6b05 ob: Improve handling of :wrap header
* lisp/ob-core.el (org-babel-insert-result): Improve handling of :wrap
header.
* testing/lisp/test-ob.el (test-ob/inline-src_blk-wrap): New test.
(test-ob/preserve-comma-escape): Add test.
2020-04-07 01:42:35 +02:00
Nicolas Goaziou 0a7e382c27 Merge branch 'maint' 2020-04-07 01:22:18 +02:00
Nicolas Goaziou e3373f4beb ob-core: Properly replace results in special blocks
* lisp/ob-core.el (org-babel-result-end): Handle results in special
blocks.
* testing/lisp/test-ob.el (test-ob/replace-special-block-result): New
test.
2020-04-07 01:21:33 +02:00
Nicolas Goaziou e18415d02c ob: Fix case when replacing Noweb reference
* lisp/ob-core.el (org-babel-expand-noweb-references): Use FIXEDCASE.
* testing/lisp/test-ob.el (test-ob/noweb-expansion): Add test.

Reported-by: Sebastian Miele <sebastian.miele@gmail.com>
<http://lists.gnu.org/r/emacs-orgmode/2020-03/msg00070.html>
2020-03-09 23:10:04 +01:00
Bastien f90642e828 test-ob.el: Fix and enhance tests
* testing/lisp/test-ob.el (test-ob/string-to-number): Fix and
enhance tests.
2020-02-19 10:56:10 +01:00
Sebastian Miele 787fa238a9 Add tests about omission of commented src blocks when e.g. tangling
* testing/lisp/test-ob.el (test-ob/noweb-expansion): Add clause to
test.
* testing/lisp/test-ob-tangle.el (ob-tangle/commented-src-blocks): Add
test.
2019-11-24 10:27:35 +01:00
Nicolas Goaziou 4848b8b9aa ob: Preserve comma escaping when inserting results
* lisp/ob-core.el (org-babel-insert-result): Fix typo
* testing/lisp/test-ob.el (test-ob/preserve-comma-escape): New test.

Reported-by: "Berry, Charles" <ccberry@ucsd.edu>
<http://lists.gnu.org/r/emacs-orgmode/2019-08/msg00250.html>
2019-08-22 10:03:56 +02:00
Joaquín Aguirrezabalaga 4939b41750 ob-core: Fix :dir when :mkdirp is not defined
* lisp/ob-core.el (org-babel-execute-src-block): Fix behaviour of
  ":dir path" when ":mkdirp" is not defined.
* testing/lisp/test-ob.el (test-ob-core/dir-mkdirp): Add a test case.

TINYCHANGE
2019-04-25 10:36:40 +02:00
Nicolas Goaziou 0c1916657a ob: Fix and add tests for mkdirp header argument
* testing/lisp/test-ob.el (test-ob-core/dir-mkdirp): Add tests.
2019-03-04 22:34:31 +01:00
stardiviner 8b5941330b ob-core: Make :mkdirp work for :dir too
* lisp/ob-core.el (org-babel-execute-src-block): Make directory if
  ":dir path" does not exist when ":mkdirp yes" exist.

* doc/org-manual.org (Header arguments): Document it.

* testing/lisp/test-ob.el: Add a specific testing file for ob-core.el,
  and add a testing for ":mkdir yes" work with :dir header argument
  usage.
2019-03-04 22:25:48 +01:00
Bastien 7a22b8f93b Merge branch 'maint' 2019-01-01 11:54:01 +01:00
Bastien f584d37a67 Update copyright year 2019-01-01 11:50:56 +01:00
Gong Qijian 2b96fc9171 ob-core: Fix `org-babel--string-to-number'
* lisp/ob-core.el (org-babel--string-to-number): Fix the regular expression.
* testing/lisp/test-ob.el (test-ob/string-to-number): Test cases.

If people write the data in the form "0001"", it means that he wants to
treat it as a string.

TINYCHANGE

> #+name: TBL
> |   id | name   | age |
> |------|--------|-----|
> | 0001 | Apollo |  16 |
> | 0002 | Bmw    |  16 |
>
> #+BEGIN_SRC emacs-lisp :results value pp :var tbl=TBL
> (mapc 'print tbl)
> #+END_SRC
>
> #+RESULTS:
> : (("0001" "Apollo" 16)
> :  ("0002" "Bmw" 16))

TINYCHANGE
2018-10-13 23:22:05 +02:00
Nicolas Goaziou 26ed66b233 ob: :file and :file-ext no longer imply :results file
* lisp/ob-core.el (org-babel-execute-src-block): ":results file" must
  be specified in order to return a file.
(org-babel-merge-params): :file and :file-ext no longer imply :results
file.
* testing/lisp/test-ob.el (test-ob/indented-cached-org-bracket-link):
(test-ob/result-file-link-type-header-argument):
(test-ob/result-graphics-link-type-header-argument): Update tests.

Deducing the results from some other arguments is not obvious.
Moreover, it prevents users from setting, e.g., :file-ext, in a node
property, as every block would then create a file.

Reported-by: Alex Fenton <alex@pressure.to>
<http://lists.gnu.org/r/emacs-orgmode/2018-05/msg00469.html>
2018-10-06 08:56:05 +02:00
Nicolas Goaziou 17edaf8c14 "src block" -> "source block" in documentation and comments
* etc/ORG-NEWS (Maxima: new headers ~:prologue~ and ~:epilogue~):
(Texinfo exports inline source blocks as ~@code{}~):
(Default lexical evaluation of emacs-lisp source blocks):
* lisp/ob-clojure.el (org-babel-clojure-default-ns):
* lisp/ob-core.el (org-babel-named-src-block-regexp-for-name):
(org-babel-current-src-block-location):
(org-babel-mark-block):
(org-babel-insert-result):
* lisp/ob-emacs-lisp.el (org-babel-default-header-args:emacs-lisp):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
* lisp/ob-lob.el (org-babel-lob-ingest):
* lisp/ob-ref.el:
* lisp/org-element.el (org-element-object-restrictions):
(org-element-src-block-parser):
(org-element-inline-src-block-parser):
* lisp/org-lint.el:
(org-lint--checkers):
* lisp/org-pcomplete.el (pcomplete/org-mode/block-option/src):
* lisp/org-src.el (org-edit-inline-src-code):
* lisp/org.el (org-ctrl-c-ctrl-c):
(org-in-src-block-p):
(org-fill-element):
* lisp/ox-html.el (org-html--textarea-block):
(org-html-format-code):
* lisp/ox-latex.el (org-latex-minted-options):
(org-latex-custom-lang-environments):
* lisp/ox-md.el:
* lisp/ox-odt.el (org-odt-format-code):
* lisp/ox.el (org-export-collect-listings):
* testing/lisp/test-ob-exp.el (ob-exp/src-block-with-affiliated-keyword):
* testing/lisp/test-ob.el (test-ob/preserve-results-indentation):
  Correct "src block" occurrences when they do not specifically refer
  to the element type `src-block'.
2018-09-20 11:23:49 +02:00
Aaron Ecay d94d52489d test files: use cl- prefixed functions, and require cl-lib 2018-05-10 04:22:30 +01:00
stardiviner b088389c6b ob-core: Add document and test for "graphics" format
* doc/org-manual.org: Document value.

* lisp/ob-core.el (org-babel-common-header-args-w-values): Handle
  symbol "graphics".

* testing/lisp/test-ob.el (test-ob/result-graphics-link-type-header-argument):
  New test.
2018-04-12 15:16:04 +02:00
stardiviner 296b0de4e8 ob-core: Add "link" results format
* lisp/ob-core.el (org-babel-execute-src-block): Handle "link" :results
  format.

* doc/org-manual.org: Add document for new result format "link".

* testing/lisp/test-ob.el (test-ob/result-file-link-type-header-argument):
  New test.
2018-04-12 15:15:59 +02:00
Marco Wahl 8554aa93a7 test-ob: Fix test case
* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--results-list):
  Removed the inner list.  Expectation "- (quote (4 5))" did not match
  the result "- '(4 5)".  I think this difference is not worth testing
  in this test.
2018-02-05 10:45:12 +01:00
Nicolas Goaziou 774e553f11 Merge branch 'maint' 2017-12-23 14:03:47 +01:00
Nicolas Goaziou d9125e435f Fix recursive Noweb expansion
* lisp/ob-core.el (org-babel-expand-noweb-references): Recursive Noweb
  expansion obey to :noweb parameter.
* testing/lisp/test-ob.el (test-ob/noweb-expansion): Add tests.

Fixes: 17523
2017-12-23 13:58:25 +01:00
Nicolas Goaziou 913aad68c3 Merge branch 'maint' 2017-12-20 13:16:28 +01:00
Nicolas Goaziou 3acc212c8f ob-core: Get :noweb-ref from definition instead of point of call
* lisp/ob-core.el (org-babel-expand-noweb-references): Get :noweb-ref
  from definition instead of point of call.

* testing/lisp/test-ob.el (test-ob/noweb-expansion-1):
(test-ob/noweb-expansion-2): Merge tests.  Add test.
2017-12-20 13:15:08 +01:00
Nicolas Goaziou fc5abc2d55 ob-core: Insert lowercase results
* lisp/ob-core.el (org-babel-insert-result): Insert lower case blocks
  and drawers.

* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--results-wrap):
(test-ob/org-babel-remove-result--results-org):
(test-ob/org-babel-remove-result--results-html):
(test-ob/org-babel-remove-result--results-latex):
(test-ob/org-babel-remove-result--results-code): Update tests.
2017-12-10 23:05:32 +01:00
Nicolas Goaziou be1e807942 Merge branch 'maint' 2017-11-25 21:13:58 +01:00
Nicolas Goaziou 1d8126385c ob-core: Fix results removal without blank line between source and results
* lisp/ob-core.el (org-babel-remove-result): Delete blank lines before
  results.
(org-babel-result-end): Use `org-element-at-point'.
* testing/lisp/test-ob.el (test-ob-verify-result-and-removed-result):
  Remove duplicate.
* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--no-blank-line):
  New test.
* testing/lisp/test-ob.el (test-ob/results-in-narrowed-buffer): Small
  refactoring.

Reported-by: Ken Mankoff <mankoff@gmail.com>
<http://lists.gnu.org/archive/html/emacs-orgmode/2017-11/msg00338.html>
2017-11-25 21:07:52 +01:00
Nicolas Goaziou 99dbca3d4f Remove `org-babel-use-quick-and-dirty-noweb-expansion'
* lisp/ob-core.el (org-babel-use-quick-and-dirty-noweb-expansion):
  Remove variable.
(org-babel-expand-noweb-references): Update function.

* doc/org.texi (noweb-ref): Document new behaviour.
(Noweb reference syntax): Delete reference to removed variable.

`org-babel-use-quick-and-dirty-noweb-expansion' main use is to speed
up Noweb expansion when expanding only by name.  By distinguishing
name and reference expansion, we no longer need this variable.  In the
first case, the expansion is quicker anyway, and in the second case,
we most certainly need an accurate expansion.
2017-10-26 13:09:23 +02:00
Nicolas Goaziou 7ce9a24115 Fix duplicate tests
Reported-by: Stig Brautaset <stig@brautaset.org>
<http://lists.gnu.org/archive/html/emacs-orgmode/2017-09/msg00187.html>
2017-09-08 13:20:48 +02:00
Nicolas Goaziou 24a76fbe57 ob-core: Fix improper results indentation
* lisp/ob-core.el (org-babel-insert-result): Fix improper results
  indentation.
* testing/lisp/test-ob.el (test-ob/preserve-results-indentation): Add
  test.

Reported-by: Chunyang Xu <mail@xuchunyang.me>
<http://lists.gnu.org/archive/html/emacs-orgmode/2017-08/msg00308.html>
2017-08-13 16:20:20 +02:00
Nicolas Goaziou f1da21f7d9 ob-core: Fix regression
* lisp/ob-core.el (org-babel-balanced-split): Fix regression
  introduced in 500abcd7fb.

* testing/lisp/test-ob.el (test-ob/balanced-split): Add tests.

Reported-by: Eric S Fraga <e.fraga@ucl.ac.uk>
<http://permalink.gmane.org/gmane.emacs.orgmode/113401>
2017-05-08 11:25:17 +02:00
Nicolas Goaziou 500abcd7fb ob-core: Fix `org-babel-balanced-split'
* lisp/ob-core.el (org-babel-balanced-split): Rewrite function.

Reported-by: Moritz Heidkamp <moritz@twoticketsplease.de>
<http://permalink.gmane.org/gmane.emacs.orgmode/113204>
2017-05-01 23:35:39 +02:00
Nicolas Goaziou 8dfab7be23 Fix failing tests
* testing/lisp/test-ob.el (test-ob/org-babel-insert-result): Fix
  failing tests.

Reported-by: "Charles C. Berry" <ccberry@ucsd.edu>
<http://permalink.gmane.org/gmane.emacs.orgmode/112475>
2017-03-05 18:05:02 +01:00
Nicolas Goaziou a4eb60931a ob-core: Properly escape Org syntax when inserting results
* lisp/ob-core.el (org-babel-examplify-region): Escape Org syntax
  before wrapping it.

* testing/lisp/test-ob.el (test-ob/org-babel-insert-result): Add test.
  Renamed from `test-ob/org-babel-insert-result--improper-lists'.

Reported-by: D M German <dmg@turingmachine.org>
2017-03-01 22:19:04 +01:00
Nicolas Goaziou 0bdf18befd test-ob: Fix failing test on MacOS
* testing/lisp/test-ob.el (test-ob/indented-cached-org-bracket-link):
  Use `expand-file-name' to prevent introducing "//" patterns in file
  name.

Reported-by: David Talmage <david.talmage@shoutpoint.com>
<http://permalink.gmane.org/gmane.emacs.orgmode/110285>
2016-11-20 09:36:42 +01:00
Nicolas Goaziou 2116162fe6 ob-core: Prevent spurious blanks lines when executing code
* lisp/ob-core.el (org-babel--insert-results-keyword):
(org-babel-where-is-src-block-result): Control better the number of
empty lines around results of a source block evaluation.

* testing/lisp/test-ob.el (test-ob/blocks-with-spaces): Add tests.
(test-ob/specific-colnames): Fix test.
2016-10-07 23:56:37 +02:00
Nicolas Goaziou 9d7d650cd7 ob-core: Fix hash with time stamp
* lisp/ob-core.el (org-babel-result-regexp): Fix regexp.
(org-babel--insert-results-keyword): Simplify format-string.
(org-babel--clear-results-maybe): Fix return value.

* testing/lisp/test-ob.el (test-ob/where-is-src-block-result): Add
  tests.

Reported-by: Thomas Alexander Gerds <tag@biostat.ku.dk>
<http://permalink.gmane.org/gmane.emacs.orgmode/109418>
2016-10-01 10:30:53 +02:00
Aaron Ecay 407b0d41a2 contrib, test suite: use assq instead of assoc for :keywords 2016-09-23 11:20:55 +01:00
Nicolas Goaziou 3b3fc520aa Fix coderef handling in source blocks
* lisp/ob-core.el (org-babel--normalize-body): Do not remove coderef.
(org-babel-get-src-block-info): Add coderef label information, when
available, to the return value.
(org-babel-execute-src-block): Expand noweb and remove coderefs
non-destructively.
* lisp/ob-lob.el (org-babel-lob-get-info): Adapt to new INFO.

* testing/lisp/test-ob-exp.el (ob-export/body-with-coderef):
* testing/lisp/test-ob.el (test-ob/evaluate-body-with-coderefs): Add
  tests.

Reported-by: Thibault Marin <thibault.marin@gmx.com>
<http://permalink.gmane.org/gmane.emacs.orgmode/108888>
2016-08-28 11:56:14 +02:00
Nicolas Goaziou 9f47b37231 Ignore coderef labels when evaluating a code block
* lisp/ob-core.el (org-babel--normalize-body): New function.
(org-babel-get-src-block-info): Use new function.

* lisp/org-src.el (org-src-coderef-regexp): New function.
* lisp/ox.el (org-export-unravel-code): Use new function.

* testing/lisp/test-ob.el (test-ob/evaluate-body-with-coderefs): New
  test.
2016-08-08 14:04:11 +02:00