Commit Graph

136 Commits

Author SHA1 Message Date
Achim Gratz 5bf928bae7 Merge branch 'maint'
Conflicts:
	lisp/ob-core.el
	lisp/org.el
	lisp/ox.el
2014-05-28 16:23:08 +02:00
Achim Gratz 790f5b4d3a ob-core, ob-exp, ob-haskell, ob-python: declarations for org-src-preserve-indentations
* lisp/ob-core.el: Add comment to forward declaration of
  'org-src-preserve-indentations'.
* lisp/ob-exp.el: Require org-src to import
  'org-src-preserve-indentations'.
* lisp/ob-haskell.el, lisp/ob-python.el: Remove superfluous forward
  declaration of 'org-src-preserve-indentations', since it gets
  imported by other requires.
2014-05-28 14:52:14 +02:00
Achim Gratz 61b8091596 ob-core:forward declare org-every
* lisp/ob-core.el (org-every): Forward declare 'org-every'.
2014-05-28 14:47:23 +02:00
Bastien Guerry b69243d44b Merge branch 'maint' 2014-05-21 15:04:36 +02:00
Ian Kelling 7d6cc7f0bf Fix error prone babel table output format detection
* ob-core.el (org-babel-insert-result): Test all list elements against
listp and (eq element 'hline) instead of checking just the first.

org-babel table output uses different formatting for a list of lists,
but detects it incorrectly causing an error. An example of a block
causing an error is an emacs lisp source block containing just 1 line:
'((1) 2)
2014-05-21 15:04:23 +02:00
Bastien Guerry cb8366cd21 ob-core.el (org-babel-demarcate-block): Fix case
* ob-core.el (org-babel-demarcate-block): Upcase or downcase
the inserted #+begin_src and #+end_src depending on the
current case of #+begin_src and #+end_src.

Thanks to Alexander Baier for reporting this.
2014-05-20 17:40:01 +02:00
Aaron Ecay 1be3c409c2 babel: fixes for commit 08e2596
* lisp/ob-core.el (org-babel-graphical-output-file): Use `user-error'
instead of `error'.

* lisp/ob-maxima.el (org-babel-execute:maxima, org-babel-maxima-expand):
* lisp/ob-octave.el (org-babel-execute:octave): Guard
`org-babel-graphical-output-file' with `ignore-errors'.
2014-05-15 23:26:30 -04:00
Bastien Guerry 7893cddc88 ob-core.el (org-babel-do-in-edit-buffer): Tiny code cleanup
* ob-core.el (org-babel-do-in-edit-buffer): Tiny code cleanup.
2014-05-15 11:50:06 +02:00
Aaron Ecay 08e2596718 ob-core.el: allow the auto-generation of output file names for src blocks.
* lisp/ob-core.el (org-babel-generate-file-param): New function.
(org-babel-get-src-block-info): Use it.
(org-babel-merge-params): Handle :file-ext.
(org-babel-graphical-output-file): error if no :file or :file-ext.
* testing/lisp/test-ob.el (test-org-babel/file-ext-and-output-dir):
New test.
* doc/org.texi (Specific header arguments): Add doc for :file-ext and
:output-dir header args.
* lisp/ob-R.el (org-babel-expand-body:R): Don’t calculate
graphics-file.
(org-babel-execute:R): Only look for a graphics-file if needed.
2014-05-11 16:33:22 -04:00
Aaron Ecay 935b69e065 Replace org-babel-*-graphical-output-file with generic version
* lisp/ob-core.el (org-babel-graphical-output-file): New generic function.
* lisp/ob-R.el (org-babel-R-graphical-output-file): Delete specific version.
(org-babel-expand-body:R): Use generic version.
* lisp/ob-maxima.el (org-babel-maxima-graphical-output-file): Delete
specific version.
(org-babel-maxima-expand): Use generic version.
* lisp/ob-octave.el (org-babel-octave-graphical-output-file): Delete
specific version
(org-babel-execute:octave): Use generic version.
2014-04-22 15:31:15 -04:00
Aaron Ecay c7dff7105b ob-core.el: Replace a use of remove with remq
* lisp/ob-core.el (org-babel-del-hlines): Use `remq' for `remove'
2014-04-22 15:30:12 -04:00
Bastien Guerry 4ea6c690fd Minor updates on org-trim, org-babel-chomp and org-babel-trim
* org.el (org-trim): Make a defsubst, use `replace-regexp-in-string'.

* ob-core.el (org-babel-chomp, org-babel-trim): Fix docstrings.
2014-04-19 14:43:28 +02:00
Bastien Guerry 9e4113994c Revert "Alias `org-babel-trim' and `org-babel-chomp' to `org-trim' and `org-trim-trailing'."
This reverts commit 7925d42d43.
2014-04-19 14:36:00 +02:00
Bastien Guerry 7925d42d43 Alias `org-babel-trim' and `org-babel-chomp' to `org-trim' and `org-trim-trailing'.
* org.el (org-trim): Rewrite and make a defsubst.

* org-bibtex.el (org-bibtex-get): Use `org-trim' instead of
`org-babel-trim'.

* ob-core.el (org-babel-trim): Delete and alias to `org-trim'.
(org-babel-chomp): Delete and alias to `org-trim-trailing'.
(org-trim-trailing): New defsubst.
(org-babel-examplize-region): Fix version.
2014-04-18 15:11:42 +02:00
Michael Weylandt 255dd41afd Org babel: Add function and keybinding to remove result blocks
* ob-core.el (org-babel-remove-result-one-or-many): New function.

* ob-keys.el (org-babel-key-bindings): Add a keybinding for the
new function `org-babel-remove-result-one-or-many'.

TINYCHANGE
2014-04-17 08:41:05 +02:00
Nicolas Goaziou df10309489 ob-ref: Properly resolve references in ":post" arguments
* lisp/ob-core.el (org-babel-exp-reference-buffer): New variable, as
  a replacement for `org-current-export-file'.
(org-babel-check-confirm-evaluate): Use new variable.
* lisp/ob-exp.el (org-babel-exp-in-export-file): Use new variable.
(org-babel-exp-get-export-buffer): Remove function.
(org-babel-exp-process-buffer): Change signature.
* lisp/ob-ref.el (org-babel-ref-resolve): Use new variable during
  export in order to properly resolve references.
* lisp/ox.el (org-export-execute-babel-code): Use new variable.

* contrib/lisp/org-wikinodes.el (org-wikinodes-process-links-for-export):
  Remove a cond branch as it is always
  false (`org-current-export-file' couldn't be a string).

* testing/lisp/test-ob-lob.el (test-ob-lob/export-lob-lines): Update
  test.
* testing/lisp/test-ob.el (test-ob/eval-header-argument): Update test.
* testing/lisp/test-ob-exp.el (ob-export/reference-in-post-header):
  New test.

During export, Babel executes sequentially all blocks in the buffer
being exported.  This can lead to modifications preventing some
references from being resolved.  As a workaround, Babel stores
a pristine copy of the buffer in a variable so it can always find
needed references.

Before this patch, the variable storing this copy was
`org-current-export-file' and was dynamically bound in "ox.el".  It
was used to resolve noweb references (`org-babel-expand-noweb-references')
but not regular references (`org-babel-ref-resolve').

Now, the variable is `org-babel-exp-reference-buffer' and it is bound
from `org-babel-exp-process-buffer'.  It is used to resolve all
references.  In particular, this allows to use references in :post
header.

Thanks to Jarmo Hurri for reporting it.
2014-03-19 21:34:56 +01:00
Eric Schulte 28ddf07a56 update named code block regexp for indentation
Previously didn't work if #+header lines intervening between the
  name and the block were indented.
2014-03-07 08:28:42 -07:00
Bastien Guerry 6a388c135f ob-core.el: Some renaming.
* ob-core.el (org-babel-insert-result): Use `org-babel-examplify-region'.
(org-babel-capitalize-examplize-region-markers): Rename to
`org-babel-capitalize-example-region-markers'.
(org-babel-examplize-region): Mark obsolete and rename to
`org-babel-examplify-region'.
2014-02-07 10:19:50 +01:00
Eric Schulte e583eaa8f1 fix bug when results butt up against headline
* lisp/ob-core.el (org-babel-examplize-region): Don't treat
  exampleized regions adjoining headlines as inline examples.
2014-02-06 14:30:30 -07:00
Eric Schulte cd3bc12a29 named and caching call lines working
* lisp/ob-core.el (org-babel-current-result-hash): Additional info
  argument so that named call line results may be found.
  (org-babel-set-current-result-hash): Additional info argument so
  that named call line results may be found.
* lisp/ob-lob.el (org-babel-lob-execute): Passing info to hash finding
  functions so that named results may be found.
2014-01-18 13:40:57 -07:00
Nicolas Goaziou b8028c607d Merge branch 'maint' 2014-01-09 21:37:11 +01:00
Nicolas Goaziou 81ce406d8f ob-core: Speed improvement
* lisp/ob-core.el (org-babel-get-inline-src-block-matches): Do not
  compute line number if all is needed is to know if we're on the
  first one.
2014-01-09 21:36:25 +01:00
Bastien Guerry f8e1745440 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-07 14:19:03 +01:00
Bastien Guerry 7d9a883b50 Update copyright years again.
Hint: copyright years are all updated in Emacs.
2014-01-07 14:18:17 +01:00
Bastien Guerry c41f5075ac Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-05 06:36:11 +01:00
Bastien Guerry 0beda99171 Revert "Update copyright years."
This reverts commit 21105594fc.
2014-01-05 06:28:07 +01:00
Bastien Guerry 096ff7e078 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-04 18:58:12 +01:00
Bastien Guerry 21105594fc Update copyright years. 2014-01-04 18:56:11 +01:00
Eric Schulte ea993c6d8c fixed insertion of results with hashes
No longer overwrites intervening #+ lines.

* lisp/ob-core.el (org-babel-where-is-src-block-result): Fixed
  insertion of results with hashes.
2013-12-13 15:06:06 -07:00
Eric Schulte 031d2565f7 don't change code block body during sha1 hashing
* lisp/ob-core.el (org-babel-sha1-hash): Don't change code block body
  during sha1 hashing.
2013-12-10 11:11:27 -07:00
Eric Schulte ed64845fd6 fix bug introduced by e6a6fed
* lisp/ob-core.el (org-babel-sha1-hash): Don't reference non-existent
  params variable.
2013-12-10 11:00:29 -07:00
Eric Schulte e6a6fed934 expanded noweb references when calculating hashes
The bulk of the new code in org-babel-sha1-hash is borrowed from
org-babel-expand-src-block.

* lisp/ob-core.el (org-babel-sha1-hash): Expanded noweb references
  when calculating hashes.
2013-12-10 00:36:16 -07:00
Bastien Guerry 487c74580c Fix bug when commenting source code.
* org.el (org-babel-do-in-edit-buffer): Declare.
(org-babel-load-file, org-insert-comment)
(org-comment-or-uncomment-region): Don't require 'ob-core.
(org-mode-map): Remap `comment-dwim' to `org-comment-dwim'.
(org-comment-dwim): New command.

* ob-core.el (org-babel-do-in-edit-buffer): Make an autoload.

See http://lists.gnu.org/archive/html/emacs-devel/2013-12/msg00154.html
for a discussion about this bug.
2013-12-06 10:45:35 +01:00
Eric Schulte 8c98879d7c declare function to appease compiler
* lisp/ob-C.el (org-remove-indentation): Declare function to appease
  compiler.
* lisp/ob-core.el (org-remove-indentation): Declare function to
  appease compiler.
* lisp/ob-fortran.el (org-remove-indentation): Declare function to
  appease compiler.
2013-11-23 17:02:22 -07:00
Eric Schulte 39070b7fc7 sometimes remove common indentation when trimming
* lisp/ob-C.el (org-babel-C-execute): Remove common indentation when
  trimming.

* lisp/ob-core.el (org-babel-read-result): Remove common indentation
  when trimming.
  (org-babel-update-block-body): Remove common indentation when
  trimming.

* lisp/ob-fortran.el (org-babel-execute:fortran): Remove common
  indentation when trimming.

* lisp/ob-tangle.el (org-babel-process-comment-text): Better default
  to process tangled comments.
2013-11-23 15:57:29 -07:00
Eric Schulte 89a35bc147 inline src block parser set "switches" in info
* lisp/ob-core.el (org-babel-parse-inline-src-block-match): Inline src
  block parser set "switches" in info, otherwise later offset are broken.
2013-11-22 08:28:29 -07:00
Eric Schulte bbcf17b969 set location info parameter for inline src blocks
* lisp/ob-core.el (org-babel-execute-src-block): Set location info
  parameter for inline src blocks.
  (org-babel-get-src-block-info): Set location info parameter for
  inline src blocks.
2013-11-22 08:28:29 -07:00
Eric Schulte 060d79f080 whitespace fixes 2013-11-22 08:28:29 -07:00
Bastien Guerry 9214000c21 Merge branch 'maint'
Conflicts:
	doc/org.texi
2013-11-17 09:17:39 +01:00
Bastien Guerry a6210cc9c2 Backport Paul's fixes from Emacs trunk (1/2)
See http://article.gmane.org/gmane.emacs.diffs/123123
2013-11-17 09:12:41 +01:00
Eric Schulte d840b84bbc Don't skip call lines searching for results
This fixes a bug noticed by Rick Frankel in which two subsequent
  #+call: lines will both update the same results.  Before this commit
  both of the following call lines would update the same result.

      #+name: call-me
      #+BEGIN_SRC emacs-lisp :var v="nil"
      v
      #+END_SRC

      #+call: call-me("one")

      #+call: call-me(v="two")

      #+RESULTS:
      : one

  Now both lines are given their own result.

      #+name: call-me
      #+BEGIN_SRC emacs-lisp :var v="nil"
      v
      #+END_SRC

      #+call: call-me("one")

      #+RESULTS:
      : one

      #+call: call-me(v="two")

      #+RESULTS:
      : two
2013-11-13 21:13:11 -07:00
Eric Schulte c67e3cda15 default to preserving hlines in call lines
* lisp/ob-core.el (org-babel-default-inline-header-args):
  Added (:hlines "yes") to the default value.
2013-11-13 21:13:11 -07:00
Bastien Guerry 487057fc26 Fix conflicts from previous merge 2013-11-12 21:11:23 +01:00
Bastien Guerry 71884cc039 Merge branch 'maint'
Conflicts:
	lisp/ob-C.el
	lisp/ob-clojure.el
	lisp/ob-core.el
	lisp/ob-lisp.el
	lisp/org-clock.el
2013-11-12 21:00:49 +01:00
Bastien Guerry f95641c443 Backport changes from Emacs revs 115081 and 115082
2013-11-12  Stefan Monnier  <monnier@iro.umontreal.ca>

	Address some byte-compiler warnings.
	* ob-abc.el (org-babel-expand-body:abc): Use dolist.
	(org-babel-execute:abc): Fix regexp quoting.
	* ob-calc.el (org--var-syms): Rename from `var-syms'.
	* ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding.
	* ob-table.el (sbe): Move debug declaration.
	* org-clock.el (org--msg-extra): Rename from `msg-extra'.
	* org.el (org-version): Avoid var name starting with _.
	(org-inhibit-startup, org-called-with-limited-levels)
	(org-link-search-inhibit-query, org-time-was-given)
	(org-end-time-was-given, org-def, org-defdecode, org-with-time):
	* org-colview.el (org-agenda-overriding-columns-format):
	* org-agenda.el (org-agenda-multi, org-depend-tag-blocked)
	(org-agenda-show-log-scoped):
	* ob-python.el (py-which-bufname, python-shell-buffer-name):
	* ob-haskell.el (org-export-copy-to-kill-ring):
	* ob-exp.el (org-link-search-inhibit-query):
	* ob-R.el (ess-eval-visibly-p):
	* ob-core.el (org-src-window-setup): Declare before use.
	(org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'.
	* ox-odt.el (org-odt-hfy-face-to-css):
	* org-src.el (org-src-associate-babel-session, org-src-get-lang-mode):
	* org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex)
	(org-bibtex-check):
	* ob-tangle.el (org-babel-tangle, org-babel-spec-to-string)
	(org-babel-tangle-single-block, org-babel-tangle-comment-links):
	* ob-table.el (sbe):
	* ob-sqlite.el (org-babel-sqlite-expand-vars):
	* ob-sql.el (org-babel-sql-expand-vars):
	* ob-shen.el (org-babel-execute:shen):
	* ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate):
	* ob-scala.el (org-babel-scala-evaluate):
	* ob-ruby.el (org-babel-ruby-table-or-string)
	(org-babel-ruby-evaluate):
	* ob-python.el (org-babel-python-table-or-string)
	(org-babel-python-evaluate-external-process)
	(org-babel-python-evaluate-session):
	* ob-picolisp.el (org-babel-execute:picolisp):
	* ob-perl.el (org-babel-perl-evaluate):
	* ob-maxima.el (org-babel-execute:maxima):
	* ob-lisp.el (org-babel-execute:lisp):
	* ob-java.el (org-babel-execute:java):
	* ob-io.el (org-babel-io-evaluate):
	* ob-haskell.el (org-babel-execute:haskell):
	* ob-fortran.el (org-babel-execute:fortran):
	* ob-exp.el (org-babel-exp-code):
	* ob-emacs-lisp.el (org-babel-execute:emacs-lisp):
	* ob-ditaa.el (org-babel-execute:ditaa):
	* ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash)
	(org-babel-parse-header-arguments, org-babel-reassemble-table)
	(org-babel-goto-src-block-head, org-babel-mark-block)
	(org-babel-expand-noweb-references, org-babel-script-escape)
	(org-babel-process-file-name):
	* ob-clojure.el (org-babel-execute:clojure):
	* ob-calc.el (org-babel-execute:calc):
	* ob-awk.el (org-babel-execute:awk):
	* ob-abc.el (org-babel-execute:abc):
	* ob-R.el (org-babel-expand-body:R):
	* ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...).

2013-11-12  Glenn Morris  <rgm@gnu.org>

	* ox-html.el (org-html-scripts): Add 2013 to copyright years.
	(org-html-infojs-template): Copyright holder to FSF.
2013-11-12 20:57:31 +01:00
Eric Schulte ac9d8012a4 fix compiler issues w/safe-header-args
* lisp/ob-core.el (org-every): Declared function for compiler.
  (org-babel-safe-header-args): Moved before first use.
  (org-babel-header-args-safe-fn): Moved before first use.
2013-10-30 11:58:50 -06:00
Aaron Ecay cba8718eac Mark some org-babel variables as safe locals under proper conditions
* lisp/ob-core.el (org-babel-inline-result-wrap,
org-babel-default-header-args,
org-babel-default-inline-header-args): mark as safe local variables
2013-10-30 11:23:34 -06:00
Eric Schulte 2eef1b4549 call org-confirm-babel-evaluate from code block
Always call org-confirm-babel-evaluate from the head of the code
  block being evaluated so that the info may be found with
  e.g., (org-babel-get-src-block-info 'light)

* lisp/ob-core.el (org-babel-check-confirm-evaluate): Call
  org-confirm-babel-evaluate from code block head.
2013-10-14 07:23:39 -06:00
Eric Schulte 5afd5d9785 optional arguments to org-babel-insert-header-arg
* lisp/ob-core.el (org-babel-insert-header-arg): Optional arguments
  for usage from Emacs Lisp programs.  In addition this function will
  now insert header arguments in the correct place instead of at the
  current point.
2013-10-06 09:07:42 -06:00
Eric Schulte 01467ae083 remove leading newline when removing a result
This fixes a number of new test failures

* lisp/ob-core.el (org-babel-remove-result): Remove leading newline
  when removing a result.
2013-10-01 06:25:31 -06:00