Commit Graph

370 Commits

Author SHA1 Message Date
Mattias Engdegård bf99b6dc11 Backport commit 4acdd7fe5 from Emacs
* lisp/ob-core.el (org-babel-remove-temporary-directory):
Use (rx (or (not ".") "...")), translated into "[^.]\\|\\.\\.\\.", to
match anything but "." and "..".

Fix edge case errors in filename-matching regexps
4acdd7fe58ae9f94102afeca67b0383141d597da
Mattias Engdegård
Tue Apr 14 12:25:16 2020 +0200

Note(km): Replaced bare "." with (any ".") for Emacs < 27
compatibility.  4acdd7fe5 was on the emacs-27 branch, but a commit on
their master (d5a7df8c0) will supersede this.
2020-04-20 00:41:39 -04:00
Kyle Meyer 6f1b837492 Silence byte-compiler
These both show up when compiling files separately (e.g., 'make
single').

ob-core already assumes ob-tangle is loaded based on declared
functions, presumably because ob.el is given responsibility for
collectively loading these pieces.  org.el loads org-attach within the
body of a function before calling org-attach-dir.
2020-04-09 22:27:06 -04:00
Nicolas Goaziou e3373f4beb ob-core: Properly replace results in special blocks
* lisp/ob-core.el (org-babel-result-end): Handle results in special
blocks.
* testing/lisp/test-ob.el (test-ob/replace-special-block-result): New
test.
2020-04-07 01:21:33 +02:00
Bastien d0018ce62c ob-core.el: Fix `org-babel--string-to-number'
* lisp/ob-core.el (org-babel--string-to-number): Prevent
strings containing whitespaces after being trimmed to be
interpreted as numbers.
2020-02-19 10:55:36 +01:00
Bastien 6b2a7cb20b ob-core.el: Correctly interpret all numbers
* lisp/ob-core.el (org-babel--string-to-number): Correctly
interpret all numbers.

Thanks to Vladimir Nikishkin for reporting this.
2020-02-19 10:39:37 +01:00
Bastien 713c8d5aba ob-core.el: Respect `org-babel-tangle-uncomment-comments'
* lisp/ob-core.el (org-babel-expand-noweb-references): Respect
`org-babel-tangle-uncomment-comments'.

Thanks to Immanuel Litzroth for reporting this.
2020-02-11 14:35:30 +01:00
Kyle Meyer ff5fc050d3 Update copyright year to 2020 2020-01-01 13:38:46 -05:00
Sebastian Miele 0e70e2a42b ob-core: Respect COMMENTed headlines when expanding noweb references
* lisp/ob-core.el (org-babel-expand-noweb-references): Add calls to
org-in-commented-heading-p where appropriate.
2019-11-24 10:27:35 +01:00
Kyle Meyer a01a8f55d8 Merge branch 'maint' 2019-10-27 15:55:30 -04:00
Juanma Barranquero 9c611fd8ac Backport commit 41ba8231e from Emacs
* lisp/ob-scheme.el (org-babel-scheme-get-buffer-impl):
* lisp/ob-shell.el (org-babel--variable-assignments:sh-generic)
(org-babel--variable-assignments:bash_array)
(org-babel--variable-assignments:bash_assoc)
(org-babel--variable-assignments:bash):
* lisp/org-clock.el (org-day-of-week):
(table--put-cell-valign-property): Fix typos.
* lisp/ob-core.el (org-babel-named-src-block-regexp-for-name)
(org-babel-named-data-regexp-for-name): Doc fix.
(org-babel-src-block-names, org-babel-result-names): Fix typos.

lisp/*.el: Fix typos and improve some docstrings
41ba8231ef072571e1a6feabc15d113e5cf57556
Juanma Barranquero
Sun Oct 20 12:12:27 2019 +0200
2019-10-27 15:54:59 -04:00
Kyle Meyer d215c3a8c0 Merge branch 'maint' 2019-09-29 15:49:08 -04:00
Juanma Barranquero 97feee0469 Backport commit 114323226 from Emacs
* lisp/ob-C.el (org-babel-prep-session:C)
(org-babel-load-session:C):
* lisp/ob-J.el (org-babel-execute:J):
* lisp/ob-asymptote.el (org-babel-prep-session:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-core.el (org-babel-process-file-name):
* lisp/ob-ebnf.el (org-babel-execute:ebnf):
* lisp/ob-forth.el (org-babel-execute:forth):
* lisp/ob-fortran.el (org-babel-execute:fortran)
(org-babel-prep-session:fortran, org-babel-load-session:fortran):
* lisp/ob-groovy.el (org-babel-execute:groovy):
* lisp/ob-io.el (org-babel-execute:io):
* lisp/ob-js.el (org-babel-execute:js):
* lisp/ob-lilypond.el (org-babel-default-header-args:lilypond)
(org-babel-lilypond-compile-post-tangle)
(org-babel-lilypond-display-pdf-post-tangle)
(org-babel-lilypond-tangle)
(org-babel-lilypond-execute-tangled-ly)
(org-babel-lilypond-compile-lilyfile)
(org-babel-lilypond-check-for-compile-error)
(org-babel-lilypond-process-compile-error)
(org-babel-lilypond-mark-error-line)
(org-babel-lilypond-parse-error-line)
(org-babel-lilypond-attempt-to-open-pdf)
(org-babel-lilypond-attempt-to-play-midi)
(org-babel-lilypond-switch-extension)
(org-babel-lilypond-set-header-args):
* lisp/ob-lua.el (org-babel-prep-session:lua):
* lisp/ob-picolisp.el (org-babel-execute:picolisp):
* lisp/ob-processing.el (org-babel-prep-session:processing):
* lisp/ob-python.el (org-babel-prep-session:python):
* lisp/ob-scheme.el (org-babel-scheme-capture-current-message)
(org-babel-scheme-execute-with-geiser, org-babel-execute:scheme):
* lisp/ob-shen.el (org-babel-execute:shen):
* lisp/org-agenda.el (org-agenda-entry-types)
(org-agenda-move-date-from-past-immediately-to-today)
(org-agenda-time-grid, org-agenda-sorting-strategy)
(org-agenda-filter-by-category, org-agenda-forward-block):
* lisp/org-faces.el (org-verbatim, org-cycle-level-faces):
* lisp/org-indent.el (org-indent-set-line-properties):
* lisp/org-macs.el (org-get-limited-outline-regexp):
* lisp/org-mobile.el (org-mobile-files):
* lisp/org.el (org-use-fast-todo-selection)
(org-extend-today-until, org-use-property-inheritance)
(org-refresh-effort-properties)
(org-track-ordered-property-with-tag, org-shiftright):
* lisp/ox-html.el (org-html-checkbox-type):
* lisp/ox-man.el (org-man-source-highlight)
(org-man-verse-block):
* lisp/ox-publish.el (org-publish-sitemap-default): Assorted
docfixes.

lisp/*.el: Fix typos and other trivial doc fixes
11432322650830fe9ae365f4113733a79226056d
Juanma Barranquero
Sat Sep 21 00:27:53 2019 +0200
2019-09-29 15:47:58 -04:00
Nicolas Goaziou df30a056b2 Fix tangling bug when major mode for LANGUAGE is not `LANGUAGE-mode'
* lisp/ob-core.el (org-babel-expand-noweb-references):
* lisp/ob-tangle.el (org-babel-tangle): Use `org-src-get-lang-mode' so
as to use proper major mode.

Reported-by: immanuel <immanuel.litzroth@gmail.com>
<http://lists.gnu.org/r/emacs-orgmode/2019-08/msg00272.html>
2019-08-30 23:36:00 +02:00
Nicolas Goaziou 4848b8b9aa ob: Preserve comma escaping when inserting results
* lisp/ob-core.el (org-babel-insert-result): Fix typo
* testing/lisp/test-ob.el (test-ob/preserve-comma-escape): New test.

Reported-by: "Berry, Charles" <ccberry@ucsd.edu>
<http://lists.gnu.org/r/emacs-orgmode/2019-08/msg00250.html>
2019-08-22 10:03:56 +02:00
Joaquín Aguirrezabalaga 4939b41750 ob-core: Fix :dir when :mkdirp is not defined
* lisp/ob-core.el (org-babel-execute-src-block): Fix behaviour of
  ":dir path" when ":mkdirp" is not defined.
* testing/lisp/test-ob.el (test-ob-core/dir-mkdirp): Add a test case.

TINYCHANGE
2019-04-25 10:36:40 +02:00
Nicolas Goaziou 64f36561ef Merge branch 'maint' 2019-03-21 21:51:36 +01:00
Sebastian Miele 719887958d ob-core: Add edit-prep in org-babel-make-language-alias
Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:
> Could you provide a commit message for your patch?

* lisp/ob-core.el (org-babel-make-language-alias): Add edit-prep to
  the list of defalias'ed functions.
2019-03-21 21:51:12 +01:00
Kyle Meyer c2f3f1912e Merge branch 'maint' 2019-03-17 22:56:24 -04:00
Paul Eggert 602f2280e3 Backport commit 3c94c7bc0 and db9c924d3 from Emacs
* lisp/ob-core.el (org-babel-string-read):
* lisp/org-agenda.el:
(org-agenda-add-entry-to-org-agenda-diary-file):
* lisp/org-element.el (org-element-keyword-parser):
* lisp/org-list.el (org-list-indent-item-generic):
* lisp/org-mhe.el (org-mhe-get-message-folder-from-index):
* lisp/org-mobile.el (org-mobile-apply):
* lisp/org-mouse.el (org-mouse-context-menu):
* lisp/org-plot.el (org-plot/gnuplot):
* lisp/org-protocol.el (org-protocol-flatten-greedy):
* lisp/org-table.el (org-table-copy-down)
(org-table-formula-make-cmp-string)
(org-table-get-stored-formulas, org-table-recalculate)
(org-table-edit-formulas):
* lisp/org.el (org-translate-link-from-planner)
(org-fill-line-break-nobreak-p):
* lisp/ox-ascii.el (org-ascii-item):
* lisp/ox-latex.el (org-latex-clean-invalid-line-breaks):
* lisp/ox.el (org-export-expand-include-keyword):
Fix regular-expression infelicities and typos.

Fix regular-expression glitches and typos
3c94c7bc02fcacb4a101188dddb0c44d53444178
Paul Eggert
Mon Mar 4 18:00:58 2019 -0800

More regexp corrections and tweaks
db9c924d3d53f46846ad8fd74a5d08f4586a520e
Paul Eggert
Fri Mar 8 09:09:40 2019 -0800

Note(km): These two commits are ported together because, with respect
to Org files, db9c924d3 is a fix of an error from 3c94c7bc0.
2019-03-17 22:52:27 -04:00
Nicolas Goaziou a486d9cbd7 Move link-related core functions out of "org.el"
* contrib/lisp/org-wl.el (org-wl-store-link-message):
* lisp/Makefile (clean-install):
* lisp/ob-core.el (org-link-bracket-re):
(org-babel-open-src-block-result):
(org-babel-read-element):
(org-babel-read-link):
(org-babel-result-end):
* lisp/ob-tangle.el (org-link-bracket-re):
(org-babel-tangle-single-block):
(org-link-analytic-bracket-re):
(org-babel-detangle):
(org-babel-tangle-jump-to-org):
* lisp/ol.el:
* lisp/org-agenda.el (org-agenda-get-some-entry-text):
(org-diary):
(org-agenda-format-item):
(org-agenda-open-link):
(org-agenda-switch-to):
(org-agenda-to-appt):
* lisp/org-bbdb.el (org-bbdb-store-link):
* lisp/org-bibtex.el (org-bibtex-store-link):
* lisp/org-capture.el (org-capture-fill-template):
* lisp/org-clock.el (org-clocktable-write-default):
(org-clock-get-table-data):
* lisp/org-compat.el (org-doi-server-url):
(org-email-link-description-format):
(org-make-link-description-function):
(org-from-is-user-regexp):
(org-descriptive-links):
(org-url-hexify-p):
(org-context-in-file-links):
(org-keep-stored-link-after-insertion):
(org-display-internal-link-with-indirect-buffer):
(org-confirm-shell-link-function):
(org-confirm-shell-link-not-regexp):
(org-confirm-elisp-link-function):
(org-confirm-elisp-link-not-regexp):
(org-file-complete-link):
(org-email-link-description):
(org-make-link-string):
(org-store-link-props):
(org-add-link-props):
(org-make-link-regexps):
(org-angle-link-re):
(org-plain-link-re):
(org-bracket-link-regexp):
(org-bracket-link-analytic-regexp):
(org-any-link-re):
* lisp/org-docview.el (org-docview-store-link):
(org-docview-complete-link):
* lisp/org-element.el (org-element-link-parser):
* lisp/org-eshell.el (org-eshell-store-link):
* lisp/org-eww.el (org-eww-store-link):
(org-eww-copy-for-org-mode):
* lisp/org-footnote.el (org-footnote-next-reference-or-definition):
* lisp/org-gnus.el (org-gnus-article-link):
(org-gnus-store-link):
* lisp/org-id.el (org-id-store-link):
* lisp/org-info.el (org-info-store-link):
* lisp/org-irc.el (org-irc-erc-store-link):
* lisp/org-mhe.el (org-mhe-store-link):
* lisp/org-pcomplete.el (pcomplete/org-mode/searchhead):
* lisp/org-protocol.el (org-protocol-do-capture):
* lisp/org-rmail.el (org-rmail-store-link):
* lisp/org-w3m.el (org-w3m-store-link):
(org-w3m-copy-for-org-mode):
2019-03-10 18:00:27 +01:00
stardiviner 8b5941330b ob-core: Make :mkdirp work for :dir too
* lisp/ob-core.el (org-babel-execute-src-block): Make directory if
  ":dir path" does not exist when ":mkdirp yes" exist.

* doc/org-manual.org (Header arguments): Document it.

* testing/lisp/test-ob.el: Add a specific testing file for ob-core.el,
  and add a testing for ":mkdir yes" work with :dir header argument
  usage.
2019-03-04 22:25:48 +01:00
Nicolas Goaziou 0e5e01ba76 Merge branch 'maint' 2019-02-04 18:02:54 +01:00
Nicolas Goaziou 70dde3f617 ob-core: Fix Noweb reference regexp
* lisp/ob-core.el (org-babel-noweb-wrap): Fix regexp, which could not
  match 2 character long references.  Add docstring.
2019-02-04 18:02:38 +01:00
Kyle Meyer ba321d0e44 Merge branch 'maint' 2019-01-13 15:14:37 -05:00
Basil L. Contovounesios ede0d19feb Backport commit 2fde6275b from Emacs
* lisp/ob-core.el (org-babel-insert-result): Use proper-list-p.

Add predicate proper-list-p
2fde6275b69fd113e78243790bf112bbdd2fe2bf
Basil L. Contovounesios
Mon Jul 9 19:00:43 2018 -0700
2019-01-13 12:43:04 -05:00
Bastien 7a22b8f93b Merge branch 'maint' 2019-01-01 11:54:01 +01:00
Bastien f584d37a67 Update copyright year 2019-01-01 11:50:56 +01:00
Gong Qijian 2b96fc9171 ob-core: Fix `org-babel--string-to-number'
* lisp/ob-core.el (org-babel--string-to-number): Fix the regular expression.
* testing/lisp/test-ob.el (test-ob/string-to-number): Test cases.

If people write the data in the form "0001"", it means that he wants to
treat it as a string.

TINYCHANGE

> #+name: TBL
> |   id | name   | age |
> |------|--------|-----|
> | 0001 | Apollo |  16 |
> | 0002 | Bmw    |  16 |
>
> #+BEGIN_SRC emacs-lisp :results value pp :var tbl=TBL
> (mapc 'print tbl)
> #+END_SRC
>
> #+RESULTS:
> : (("0001" "Apollo" 16)
> :  ("0002" "Bmw" 16))

TINYCHANGE
2018-10-13 23:22:05 +02:00
Nicolas Goaziou 1b62a56498 Merge branch 'master' into next 2018-10-06 09:42:04 +02:00
Nicolas Goaziou 5cc69a9ebf Deprecate `org-babel-strip-quotes' in favor of `org-strip-quotes'
* lisp/ob-core.el (org-babel-strip-quotes): Remove function.
* lisp/org-macs.el (org-strip-quotes): New function.
* lisp/org-compat.el (org-babel-strip-quotes): Alias for new function.
* lisp/ob-haskell.el (org-babel-execute:haskell):
* lisp/ob-octave.el (org-babel-octave-evaluate-session): Use new function.
2018-10-06 09:40:33 +02:00
Nicolas Goaziou 26ed66b233 ob: :file and :file-ext no longer imply :results file
* lisp/ob-core.el (org-babel-execute-src-block): ":results file" must
  be specified in order to return a file.
(org-babel-merge-params): :file and :file-ext no longer imply :results
file.
* testing/lisp/test-ob.el (test-ob/indented-cached-org-bracket-link):
(test-ob/result-file-link-type-header-argument):
(test-ob/result-graphics-link-type-header-argument): Update tests.

Deducing the results from some other arguments is not obvious.
Moreover, it prevents users from setting, e.g., :file-ext, in a node
property, as every block would then create a file.

Reported-by: Alex Fenton <alex@pressure.to>
<http://lists.gnu.org/r/emacs-orgmode/2018-05/msg00469.html>
2018-10-06 08:56:05 +02:00
Nicolas Goaziou bfd481be42 ob-core: Remove `org-babel-set-current-result-hash'
* lisp/ob-core.el (org-babel-set-current-result-hash): Remove
  function, unused through the code base.
2018-10-03 18:44:34 +02:00
Nicolas Goaziou 17edaf8c14 "src block" -> "source block" in documentation and comments
* etc/ORG-NEWS (Maxima: new headers ~:prologue~ and ~:epilogue~):
(Texinfo exports inline source blocks as ~@code{}~):
(Default lexical evaluation of emacs-lisp source blocks):
* lisp/ob-clojure.el (org-babel-clojure-default-ns):
* lisp/ob-core.el (org-babel-named-src-block-regexp-for-name):
(org-babel-current-src-block-location):
(org-babel-mark-block):
(org-babel-insert-result):
* lisp/ob-emacs-lisp.el (org-babel-default-header-args:emacs-lisp):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
* lisp/ob-lob.el (org-babel-lob-ingest):
* lisp/ob-ref.el:
* lisp/org-element.el (org-element-object-restrictions):
(org-element-src-block-parser):
(org-element-inline-src-block-parser):
* lisp/org-lint.el:
(org-lint--checkers):
* lisp/org-pcomplete.el (pcomplete/org-mode/block-option/src):
* lisp/org-src.el (org-edit-inline-src-code):
* lisp/org.el (org-ctrl-c-ctrl-c):
(org-in-src-block-p):
(org-fill-element):
* lisp/ox-html.el (org-html--textarea-block):
(org-html-format-code):
* lisp/ox-latex.el (org-latex-minted-options):
(org-latex-custom-lang-environments):
* lisp/ox-md.el:
* lisp/ox-odt.el (org-odt-format-code):
* lisp/ox.el (org-export-collect-listings):
* testing/lisp/test-ob-exp.el (ob-exp/src-block-with-affiliated-keyword):
* testing/lisp/test-ob.el (test-ob/preserve-results-indentation):
  Correct "src block" occurrences when they do not specifically refer
  to the element type `src-block'.
2018-09-20 11:23:49 +02:00
Nicolas Goaziou 318d5bab64 Fix failing test
* lisp/ob-core.el (org-babel-import-elisp-from-file): Refactor code.
  Fix error when `org-table-to-lisp' return value contains `hline'.
2018-08-30 23:48:41 +02:00
Nicolas Goaziou 120f871f41 Small refactoring
* lisp/ob-core.el (org-babel-open-src-block-result): Fix docstring,
  refactor code.
* lisp/org.el (org-open-at-point): Refactor so as to not call
  `org-babel-open-src-block-result' unconditionally.
2018-07-05 13:15:30 +02:00
Nicolas Goaziou 8e54cafeb2 Fix noweb expansion during export
* lisp/ob-core.el (org-babel-sha1-hash): Add optional argument to
  specify context.
(org-babel-execute-src-block): Use new argument.
* lisp/ob-exp.el (org-babel-exp-src-block): Use new argument.
(org-babel-exp-results): Fix context.

Reported-by: Ken Mankoff <mankoff@gmail.com>
<http://lists.gnu.org/r/emacs-orgmode/2018-06/msg00117.html>
2018-06-23 23:04:45 +02:00
Aaron Ecay 4afb7f747b Update declare-function calls for functions that have moved.
In cases where functions have moved from org.el into org-macs.el, it
is often possible to replace declare-function by (require 'org-macs)
2018-05-10 01:04:12 +01:00
Nicolas Goaziou 0dda9bf1c1 Mark `org-get-indentation' as obsolete
* lisp/org-macs.el (org-get-indentation): Move function...
* lisp/org-compat: ... here.
* lisp/ob-core.el (org-babel-demarcate-block):
(org-babel-insert-result):
(org-babel-update-block-body):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
* lisp/org-agenda.el (org-agenda-get-some-entry-text):
* lisp/org-capture.el (org-capture-place-item):
* lisp/org-clock.el (org-clock-in):
* lisp/org-element.el (org-element-swap-A-B):
* lisp/org-feed.el (org-feed-format-entry):
* lisp/org-indent.el (org-indent-add-properties):
* lisp/org-list.el (org-in-item-p):
(org-list-struct):
(org-list-struct-apply-struct):
(org-list-item-body-column):
(org-toggle-item):
* lisp/org-src.el (org-src--edit-element):
* lisp/org.el (org-fixup-indentation):
(org-cdlatex-environment-indent):
(org--get-expected-indentation):
(org-indent-region):
(org-toggle-fixed-width):
* lisp/ox.el (org-export-expand-include-keyword): Use
  `current-indentation' instead.
2018-05-09 01:26:31 +02:00
stardiviner b088389c6b ob-core: Add document and test for "graphics" format
* doc/org-manual.org: Document value.

* lisp/ob-core.el (org-babel-common-header-args-w-values): Handle
  symbol "graphics".

* testing/lisp/test-ob.el (test-ob/result-graphics-link-type-header-argument):
  New test.
2018-04-12 15:16:04 +02:00
stardiviner 296b0de4e8 ob-core: Add "link" results format
* lisp/ob-core.el (org-babel-execute-src-block): Handle "link" :results
  format.

* doc/org-manual.org: Add document for new result format "link".

* testing/lisp/test-ob.el (test-ob/result-file-link-type-header-argument):
  New test.
2018-04-12 15:15:59 +02:00
Nicolas Goaziou 003af466c5 ob-core: Fix failing tests.
* lisp/ob-core.el (org-babel-result-to-file): Do not assume current
  buffer is visiting a file.
2018-04-03 00:11:14 +02:00
Nicolas Goaziou bc7b24d0d0 ob-core: Silence byte-compiler 2018-03-13 09:29:50 +01:00
stardiviner 49a8de4ffd
* ob-core.el (org-babel-result-to-file): relative file link result.
Respect option `org-link-file-path-type`.
2018-03-06 14:43:22 +08:00
Nicolas Goaziou b420c8e290 ob-core: Fix last commit
* lisp/ob-core.el (org-babel-execute-src-block): Fix thinko in commit
  122bf2997.
2018-03-05 14:34:28 +01:00
Nicolas Goaziou 122bf29974 ob-core: Tiny refactoring
* lisp/ob-core.el (org-babel-execute-src-block): Tiny refactoring.
  Keep lines under 80 columns.
2018-03-03 10:07:21 +01:00
stardiviner 39bd69b08d
* ob-core.el: (org-babel-execute-src-block) handle :results graphics :file case.
Don't write result to file if result is graphics.
2018-03-02 14:22:52 +08:00
Kyle Meyer 47908228e7 Merge branch 'maint' 2018-02-18 16:33:04 -05:00
Glenn Morris 4ddfc6bd69 Backport commit 66a4e651f from Emacs
; Fix doc typos related to indefinite articles
66a4e651f3cf38c320d1a9d5ae6f88dcc641792b
Glenn Morris
Fri Feb 16 15:16:15 2018 -0500
2018-02-18 16:32:41 -05:00
Nicolas Goaziou 013941de86 `org-save-outline-visibility' preserve outline, blocks and drawers
* lisp/org-macs.el (org-save-outline-visibility): Also preserve blocks
  and drawers visibility.  Re-implement without helper functions.
  (org-outline-overlay-data):
  (org-set-outline-overlay-data): Remove functions.
2018-02-11 11:37:50 +01:00
Nicolas Goaziou e490d2766f Merge branch 'maint' 2018-02-01 15:51:28 +01:00