* lisp/ob-ref.el (org-babel-ref-parse): If
`org-babel-current-src-block-location' is a marker, it can be from
another buffer, use marker-position instead in this case.
Introduced with r114064 on Emacs trunk. Not sure if this is a bug in
Org or Emacs, but the patch restores the previous behaviour.
* lisp/ob-core.el (org-babel-execute-src-block): Ensure that the
location is set before anything else is done.
* lisp/ob-ref.el (org-babel-ref-parse): Evaluate Emacs Lisp values in
header arguments at the location of the original code block.
* testing/lisp/test-ob.el (test-ob/location-of-header-arg-eval): Test
defending the new header argument evaluation behavior.
This patch ensure Org-mode will build on all supported versions of
Emacs, after the renaming of the cl macros behind the cl- prefix in the
recent Emacs trunk.
* lisp/org-compat.el (org-flet): Compatibility function now that flet
has been removed from cl-macs.
(org-labels): Compatibility function now that labels has been removed
from cl-macs.
* lisp/ob-R.el (org-compat): Require org-compat.
* lisp/ob-comint.el: Require org-compat.
* lisp/ob-exp.el (org-babel-exp-do-export): Switch to compatibility
function.
* lisp/ob-gnuplot.el (org-babel-expand-body:gnuplot): Switch to
compatibility function.
* lisp/ob-lob.el (org-babel-lob-get-info): Switch to compatibility
function.
(org-babel-lob-execute): Switch to compatibility function.
* lisp/ob-python.el (org-babel-python-evaluate-session): Switch to
compatibility function.
* lisp/ob-ref.el (org-babel-ref-index-list): Switch to compatibility
function.
* lisp/ob-sh.el (org-babel-sh-var-to-string): Switch to compatibility
function.
* lisp/ob-tangle.el (org-babel-load-file): Switch to compatibility
function.
(org-babel-tangle): Switch to compatibility function.
(org-babel-spec-to-string): Switch to compatibility function.
* lisp/ob.el (org-babel-view-src-block-info): Switch to compatibility
function.
(org-babel-execute-src-block): Switch to compatibility function.
(org-babel-edit-distance): Switch to compatibility function.
(org-babel-switch-to-session-with-code): Switch to compatibility
function.
(org-babel-sha1-hash): Switch to compatibility function.
(org-babel-balanced-split): Switch to compatibility function.
(org-babel-join-splits-near-ch): Switch to compatibility function.
(org-babel-get-rownames): Switch to compatibility function.
(org-babel-format-result): Switch to compatibility function.
(org-babel-insert-result): Switch to compatibility function.
(org-babel-examplize-region): Switch to compatibility function.
(org-babel-merge-params): Switch to compatibility function.
(org-babel-noweb-p): Switch to compatibility function.
(org-babel-expand-noweb-references): Switch to compatibility function.
* lisp/org-bibtex.el (org-bibtex-headline): Switch to compatibility
function.
(org-bibtex-fleshout): Switch to compatibility function.
(org-bibtex-read): Switch to compatibility function.
(org-bibtex-write): Switch to compatibility function.
* lisp/org-exp-blocks.el (org-export-blocks-preprocess): Switch to
compatibility function.
* lisp/org-exp.el (org-export-format-source-code-or-example): Switch to
compatibility function.
* lisp/org-macs.el (org-called-interactively-p): Indentation fix.
* lisp/org-mouse.el (org-mouse-timestamp-today): Switch to compatibility
function.
(org-mouse-set-priority): Switch to compatibility function.
(org-mouse-popup-global-menu): Switch to compatibility function.
(org-mouse-context-menu): Switch to compatibility function.
* lisp/org-plot.el (org-plot/gnuplot-to-grid-data): Switch to
compatibility function.
(org-plot/gnuplot-script): Switch to compatibility function.
* lisp/org.el (org-entry-get): Switch to compatibility function.
(org-fill-paragraph): Switch to compatibility function.
(org-auto-fill-function): Switch to compatibility function.
This fixes a wrong merge that should not have happened:
commit 7e903a merges the master branch into the maint branch,
while we really want to keep the maint branch a bugfix-only
branch.
This commit reverts back the maint branch to its state before
merging the master branch. From there, we will fix remaining
problems with the maint branch (e.g. copyright issues) then
release this maint branch as Org-mode 7.8.05.
* lisp/ob-ref.el (org-babel-ref-split-args): Now uses
`org-babel-balanced-split'.
* testing/lisp/test-ob.el (test-ob/splitting-variable-lists-in-references):
Test new working behavior.
* org.el (org-block-regexp)
(org-heading-keyword-regexp-format)
(org-heading-keyword-maybe-regexp-format): Move up to keep the
byte-compiler happy.
* org-special-blocks.el (org-html): Require 'org-html.
(org-open-par, org-close-par-maybe): Declare as functions.
* ob.el (org-reduce): Declare as a function.
(org-current-export-file): Declare.
* ob-ref.el (org-babel-update-intermediate): Make a defvar.
* lisp/ob-ref.el (org-babel-update-intermediate): New custom variable.
(org-babel-ref-resolve): Optionally update the in-buffer results of
code blocks which are evaluated to resolve references.
* lisp/ob-ref.el (org-babel-ref-resolve): Search for named code blocks
before named data.
* lisp/ob.el (org-babel-named-data-regexp-for-name): New function for
finding named data.
* testing/lisp/test-ob.el (test-ob/resolve-code-blocks-before-data-blocks):
Test to ensure that named references are resolved in the correct
order.
* lisp/ob-ref.el (org-babel-ref-resolve): Don't change location when
looking at the contents.
* testing/lisp/test-ob.el (test-ob/catches-all-references): Test
enforcing the correct behavior.
Nick Dokos <nicholas.dokos@hp.com> writes:
> Eric Schulte <schulte.eric@gmail.com> wrote:
>
>> The attached updated patch fixes a bug in the original.
>>
>
> Minor problem in applying:
>
> ,----
> | $ git apply ~/Mail/inbox/724
> | /home/nick/Mail/inbox/724:671: trailing whitespace.
> | #+name:
> | /home/nick/Mail/inbox/724:599: new blank line at EOF.
> | +
> | warning: 2 lines add whitespace errors.
> `----
The attached version fixes these issues, Thanks -- Eric
>From 0e43d59ee8d46a63f86780a502de726271bc39de Mon Sep 17 00:00:00 2001
From: Eric Schulte <schulte.eric@gmail.com>
Date: Fri, 28 Oct 2011 10:44:21 -0600
Subject: [PATCH] removing code block, results and call-line synonyms -- BREAKING CHANGE
Following a round of on-list discussion many code block synonyms have
been removed, moving forward the following syntax is valid.
- call lines are specified with #+call:
- code blocks are named with #+name:
- results are named with #+name:, however results generated by a code
block may still be labeled with #+results:, and tables named with
#+tblname: will be considered to be named results
The following function may be used to update an existing Org-mode
buffer to the new syntax.
(defun update-org-buffer ()
"Update an Org-mode buffer to the new data, code block and call line syntax."
(interactive)
(save-excursion
(flet ((to-re (lst) (concat "^[ \t]*#\\+" (regexp-opt lst t)
"\\(\\[\\([[:alnum:]]+\\)\\]\\)?\\:[ \t]*"))
(update (re new)
(goto-char (point-min))
(while (re-search-forward re nil t)
(replace-match new nil nil nil 1))))
(let ((old-re (to-re '("RESULTS" "DATA" "SRCNAME" "SOURCE")))
(lob-re (to-re '("LOB")))
(case-fold-search t))
(update old-re "name")
(update lob-re "call")))))
Note: If an old version of Org-mode (e.g., the one shipped with Emacs)
is installed on your system many of the important variables will
be pre-defined with a defvar and *will not* have their values
automatically updated, these include the following.
- org-babel-data-names
- org-babel-result-regexp
- org-babel-src-block-regexp
- org-babel-src-name-regexp
- org-babel-src-name-w-name-regexp
It may be necessary to either remove the source code of older
versions of Org-mode, or to explicitly evaluate the ob.el file.
* lisp/ob-exp.el (org-exp-res/src-name-cleanup): Updated
Documentation.
* lisp/ob-lob.el (org-babel-block-lob-one-liner-regexp): Updated
regular expression.
(org-babel-inline-lob-one-liner-regexp): Updated regular expression.
* lisp/ob-ref.el (org-babel-ref-resolve): Notice when something that
looks like a data results may actually be a code block.
* lisp/ob-table.el: Updated documentation.
* lisp/ob.el (org-babel-src-name-regexp): Simplified regexp.
(org-babel-get-src-block-info): Updated match strings.
(org-babel-data-names): Simplified acceptable names.
(org-babel-find-named-block): Indentation.
(org-babel-find-named-result): Updated to not return a code block as
a result.
* lisp/org.el (org-fontify-meta-lines-and-blocks-1): Removing
references to old syntactic elements.
(org-additional-option-like-keywords): Removing references to old
syntactic elements.
* contrib/babel/library-of-babel.org: Updated to make use of the new
syntax.
* testing/examples/babel-dangerous.org: Updated to make use of the new
syntax.
* testing/examples/babel.org: Updated to make use of the new syntax.
* testing/examples/ob-awk-test.org: Updated to make use of the new
syntax.
* testing/examples/ob-fortran-test.org: Updated to make use of the new
syntax.
* testing/lisp/test-ob.el: Removed two bad tests which tested the
literal values of old regular expressions rather than their
behavior.
Also remove blank lines before the ";;; org*el ends here" declarations.
Having a "Version" header forced us to update every file when releasing a
new version of Org; it also forced us to update every file when merging Org
with Emacs trunk, thus cluttering the diffs between the previously merged
version and the new one with useless information.
Glenn Morris suggested this in emacs-devel:
http://lists.gnu.org/archive/html/emacs-devel/2011-08/msg00322.html
* lisp/ob-ref.el (org-babel-ref-goto-headline-id): Split out into its
own function.
(org-babel-ref-headline-body): Split out into its own function.
(org-babel-ref-resolve): Using new functions, and alignment.
* lisp/ob.el (org-babel-ref-goto-headline-id): Declare function.
(org-babel-ref-headline-body): Declare function.
(org-babel-expand-noweb-references): Now expands noweb references to
headlines during expansion.
* lisp/ob-ref.el (org-babel-ref-resolve): Now resolves references to
headlines by either global or custom id, in which case the contents
of the headline are returned literally.
* lisp/ob.el (org-babel-merge-params): Ensure variable parameters are
not reversed.
* lisp/ob-ref.el (org-babel-ref-split-args): Ensure variable
parameters are not reversed.
* lisp/ob-ref.el (org-babel-ref-resolve): Using the new result regexp.
* lisp/ob.el (org-babel-data-names): Configurable list of names of data.
(org-babel-result-regexp): Using new results regexp.
* lisp/ob-ref.el (org-babel-ref-at-ref-p): Only try to read results as
a list if at the *beginning* of a list item.
* lisp/ob.el (org-babel-read-result): Only try to read results as a
list if at the *beginning* of a list item.
* org.el: remove spurious linebreak introduced by earlier patch
* ob.el, ob-ref.el: remove double fix of the same problem
Achim Gratz <Stromeko@Stromeko.DE> wrote:
> this patch had already been partially applied by Carsten and Eric (in
> slightly a different way than I suggested). The changes to ob.el and
> ob-ref.el (the require statements) are therefore superfluous and should
> probably be backed out. There was also a superfluous whitespace change
> in org.el (a closing paren that was broken onto the next line). Patch
> to this effect is attached. You've already cleaned up org-agenda.el and
> the conditions in org-macs...
Thanks to Nicolas Goaziou for pointing this out
* lisp/ob-ref.el (org-babel-ref-at-ref-p): Use higher level function
for testing list membership.
* lisp/ob.el (org-babel-read-result): Use higher level function for
testing list membership.
(org-babel-result-end): Use higher level function for testing list
membership.
* lisp/ob-ref.el (org-babel-ref-resolve): Recognize `list' as a unique
type of data
(org-babel-ref-at-ref-p): Recognize `list' as a unique type of data
* lisp/ob.el (org-babel-read-result): Recognize `list' as a unique
type of data
(org-babel-read-list): A function to read a textual Org-mode list
into an emacs-lisp list.
(org-babel-insert-result): Recognizes the "list" result param to
insert data as an Org-mode list.
(org-babel-result-end): Find the end of an Org-mode list.
(org-babel-merge-params): Add "list" as a result param.
* doc/org.texi (results): Documentation of the new "list" results
header argument.
* lisp/ob-lob.el (org-babel-lob-get-info): including pass-through
header arguments in results variable header argument string
* lisp/ob.el (org-babel-execute-src-block): working with new header
argument setup
(org-babel-parse-header-arguments): only split header argument
strings when []'s are balanced
* lisp/ob-exp.el (org-babel-exp-results): replaced old function call
* lisp/ob-lob.el (org-babel-lob-execute): replaced old function call
* lisp/ob-ref.el (org-babel-ref-parse): removed obsolete optional
params argument, also no longer chokes when handed an
already-resolved reference
(org-babel-ref-resolve): removed obsolete optional params argument
* lisp/ob.el (org-babel-ref-parse): updated function declaration
(org-babel-get-src-block-info): replaced old function call
(org-babel-header-arg-names): indentation
(org-babel-execute-src-block): now expanding all parameters using
the newly combined org-babel-process-params
(org-babel-switch-to-session-with-code): indentation
(org-mode-hook): indentation
(org-babel-process-params): now packages all results into the
parameter alist and does variable expansion, this should no longer
be called from inside of language functions
(org-babel-expand-noweb-references): updated function call for newly
removed obsolete function parameter
* lisp/org-compat.el (org-number-sequence): New function.
* lisp/ob-R.el (org-babel-expand-body:R): Use `org-number-sequence'.
* lisp/ob.el (org-babel-where-is-src-block-result): Use `org-number-sequence'.
(org-babel-current-buffer-properties): Fix variable definition.
* lisp/ob-ref.el (org-babel-ref-index-list): Use `org-number-sequence'.
* lisp/ob-latex.el (org-babel-latex-tex-to-pdf): Use the 2-argument version
of `shell-command'.
* lisp/org-latex.el (org-export-as-pdf): Use the 2-argument version
of `shell-command'.
* lisp/ob-ref.el (org-babel-ref-resolve-reference): removed an error
introduced while fixing compiler warnings -- required mirroring of
the count cl-seqs function under the org-mode namespace.
* lisp/org.el (org-count): adding an org-mode version of the cl-seqs
count function
* lisp/ob-ref.el (org-babel-ref-index-list): slight code cleanup, also
now allowing an empty index to mean the entire range
* doc/org.texi (var): updated the documentation of Babel index
referencing to include working examples covering the full range of
index behavior
Thanks to Austin Frank for suggesting these features and to Jonathan
Arkell for an implementation suggestion
This commit
- adds `org-babel-goto-named-result' for jumping to named results
- adds TAB-completion to `org-babel-goto-named-src-block'
- standardizes on "-src-" instead of "-source-" in all babel functions
- adds `org-babel-[next/previous]-src-block' functions and keybindings
- documents the above in orgcard.tex
* doc/orgcard.tex: update documentation of babel keybindings
* lisp/ob-exp.el (org-exp-res/src-name-cleanup): standardized on
"-src-" instead of "-source-"
* lisp/ob-keys.el (org-babel-key-bindings): updating keybindings for
new movement functions
* lisp/ob-lob.el (org-babel-lob-ingest): standardized on "-src-"
instead of "-source-"
* lisp/ob-ref.el (org-babel-ref-resolve-reference): standardized on
"-src-" instead of "-source-"
* lisp/ob-tangle.el (org-babel-tangle-collect-blocks): standardized on
"-src-" instead of "-source-"
* lisp/ob.el (org-babel-src-name-regexp): standardized on "-src-"
instead of "-source-"
(org-babel-src-name-w-name-regexp): adding regexp for matching
source names along with their names
(org-babel-get-src-block-info): using new named source block regexp
(org-babel-result-regexp): adding optional whitespace after result
regexp
(org-babel-result-w-name-regexp): adding regexp for matching results
which have names
(org-babel-named-src-block-regexp-for-name): standardized on "-src-"
instead of "-source-"
(org-babel-map-src-blocks): standardized on "-src-" instead of
"-source-"
(org-babel-where-is-src-block-head): standardized on "-src-" instead of
"-source-"
(org-babel-goto-named-src-block): standardized on "-src-" instead of
"-source-", also added completing read
(org-babel-src-block-names): collects source block names from a file
or the current buffer
(org-babel-goto-named-result): function for jumping to a named
result
(org-babel-result-names): returns results names from a file or the
current buffer
(org-babel-next-src-block): jump to the next source block
(org-babel-previous-src-block): jump to the previous source block
Eric Schulte
Achim Gratz
Bastien Guerry
Eric Schulte
emacs
Carsten Dominik
Dan Davison
Achim Gratz
Tom Dye