Eric Schulte
9040ad657b
adding string manipulation functions to org-babel.el
2009-06-11 14:31:37 -07:00
Eric Schulte
2081b95410
Revert "org-babel-comint-with-output is now fully self-contained and side-effect free"
...
This seems to be causing problems...
This reverts commit 0573fc4d9c
.
2009-06-11 12:55:39 -07:00
Eric Schulte
dc551fab04
beefed up org-babel-comint-wait-for-output but it still sometimes misses multiple outputs
2009-06-11 12:44:14 -07:00
Eric Schulte
f5481ab666
looks like out comint waiting function needs some work...
2009-06-11 12:35:48 -07:00
Eric Schulte
0573fc4d9c
org-babel-comint-with-output is now fully self-contained and side-effect free
2009-06-11 12:16:37 -07:00
Eric Schulte
eacce7b29d
`org-babel-comint-in-buffer' now declares it's indentation
2009-06-11 07:32:31 -07:00
Eric Schulte
aa410df722
added nice little macro to capture output
2009-06-10 22:18:59 -07:00
Eric Schulte
8d0fd18933
working on org-babel-comint for automatically keeping a ring
2009-06-10 17:27:06 -07:00
Eric Schulte
23c61abf90
more robust org-babel-chomp
2009-06-10 16:17:04 -07:00
Eric Schulte
9c70974391
started working on ruby 'script' execution
2009-06-09 16:33:36 -07:00
Eric Schulte
f3da4d0321
functional results now working with org-babel-comint and org-babel-script
2009-06-09 16:10:43 -07:00
Eric Schulte
39d1674f30
org-babel-R is now able to assign variables
2009-06-09 15:28:59 -07:00
Eric Schulte
d3f1d07066
org-babel-R can now run in 'script' mode
2009-06-09 15:02:01 -07:00
Eric Schulte
4da3ddc623
Merge branch 'session' of git@github.com:eschulte/org-babel into session
2009-06-08 15:05:08 -07:00
Eric Schulte
cdb41f5106
working on org-babel-script.el (winnowing, and using org-babel-comint.el)
2009-06-08 15:03:04 -07:00
Dan Davison
1e4c3389b6
As was just done for branch master, removing all support for hlines/colnames -- they persist in branch rowcolnames. Also removing comments. These should never have been present in this branch.
2009-06-06 18:12:42 -04:00
Eric Schulte
b533d9d446
cleaned up org-babel-comint and removed helper functions
2009-06-03 20:52:01 -07:00
Eric Schulte
fe75562a64
org-babel-comint is basically working
2009-06-03 20:51:36 -07:00
Eric Schulte
e1aeec8ab1
begun implementing org-babel-comint
...
a collection of functions to simplify interaction with comint-mode
buffers
2009-06-03 20:18:18 -07:00
Eric Schulte
c175d3ce0d
playing with org-babel-script and comint buffers/functions
2009-06-03 17:37:50 -07:00
Eric Schulte
2a663b9e09
R is now using last output (with default session) and passing all tests
2009-06-03 15:59:27 -07:00
Eric Schulte
49db1e523c
Merge branch 'master' into session
...
Conflicts:
org-babel.org
2009-06-03 15:30:10 -07:00
Eric Schulte
39f7174884
Revert "Revert "Make org table result have header row and hline when appropriate...""
...
This reverts commit dff01091dc
.
Yes, this is a reversion of a reversion, as the original commit has
been reverted in the master branch, I'm now just going to revert the
reversion and then merge with master to maintain inter-branch
cohesion.
oh, did I mention... "revert"
2009-06-03 15:26:32 -07:00
Dan Davison
02b265b2e3
Reverted tentative and hackish support for hline in R output. I have left a commented line and an unused function while I am thinking about this, and pending me learning git better. However I haven't yet reverted the ability of R to recognise hlines in var references, so the grades example still works. All sbe tests are passed.
2009-06-03 12:09:52 -04:00
Eric Schulte
dff01091dc
Revert "Make org table result have header row and hline when appropriate..."
...
This reverts commit e4263daf76
.
I'm reverting this commit in the sesion branch because it is breaking
the tests for R, as it no longer allows R source code blocks to return
scalar values. Hopefully this issue will be fixed in the master
branch before I merge the session branch back in.
2009-06-02 16:29:30 -07:00
Eric Schulte
bba80bb837
working on sessions
2009-06-02 16:26:57 -07:00
Eric Schulte
c38294d21f
DONE Remove protective commas from # comments before evaluating
2009-06-01 16:56:59 -07:00
Dan Davison
e4263daf76
Make org table result have header row and hline when appropriate. (This should have been included with commit a39d68640e
). The approach I've taken is to make R always write the column names into the tsv file. If the result does not have user-supplied column-names, then R writes default column names of the form V1,V2,...,V$numcols. After reading the tsv back into lisp, we check whether it has "real" column names or the R defaults. If it has real column names, then I give the org table an hline.
...
I expect this will conflict with Eric's work on sessions, but we can deal with that.
There is a remaining quoting issue that needs to be dealt
with. E.g. with an unquoted string in the input, it comes out as
quoted in the result. This seems bad, since if you use the output as
new input you get something different (with extra
quoting). (non-idempotence if that's the right term).
| col1 | col2 | col3 |
|------+---------+------|
| 1 | 2 | 3 |
| 4 | schulte | 6 |
tabel
| "col1" | "col2" | "col3" |
|--------+-----------+--------|
| 1 | 2 | 3 |
| 4 | "schulte" | 6 |
2009-05-30 16:45:26 -04:00
Dan Davison
eb29bef93f
Made org-babel-remove-result interactive. Eric if you agree do you want to decide on a binding?
2009-05-30 15:59:46 -04:00
Dan Davison
a39d68640e
Allowing org-tables with hline to be referred to and passed into R. If hline is present, the first row of the table becomes the column names in R. This allows the grades example to run for me which was not true before. Eric: any commits I make should be viewed as tentative -- feel free to reject or recode them.
2009-05-30 15:00:06 -04:00
Dan Davison
2ca59eaa0f
Preventing end of buffer error when no newline after #+end_src
2009-05-29 23:34:50 -04:00
Eric Schulte
d49084b73d
small additions to org-babel-comint.el
2009-05-29 17:45:40 -07:00
Eric Schulte
c5a58ad6aa
moving generalized comint functions to new file org-babel-comint.el
2009-05-27 19:00:13 -07:00
Eric Schulte
2c3c91ed12
removed org-babel-ui (tabbing blocks) as the functionality will be included in org-mode core
2009-05-27 16:34:48 -07:00
Eric Schulte
9aa713be8c
updated tag line
2009-05-24 14:10:03 -07:00
Eric Schulte
6614df037f
now passing all tests with new name "org-babel"
2009-05-24 14:08:02 -07:00
Eric Schulte
9247200bb0
renaming the org-babel/ directory to the lisp/ directory
2009-05-24 13:56:20 -07:00