Commit Graph

72 Commits

Author SHA1 Message Date
Aaron Ecay 0d000f5680 babel: small change in API.
* lisp/ob-core.el (org-babel--get-vars): New function.
(org-babel-get-header): Delete.
* lisp/ob-C.el (org-babel-C-expand-C):
(org-babel-C-expand-D):
* lisp/ob-R.el (org-babel-variable-assignments:R):
* lisp/ob-abc.el (org-babel-expand-body:abc):
* lisp/ob-asymptote.el (org-babel-variable-assignments:asymptote):
* lisp/ob-awk.el (org-babel-execute:awk):
* lisp/ob-calc.el (org-babel-execute:calc):
* lisp/ob-clojure.el (org-babel-expand-body:clojure):
* lisp/ob-dot.el (org-babel-expand-body:dot):
* lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp):
* lisp/ob-fortran.el (org-babel-expand-body:fortran):
(org-babel-fortran-ensure-main-wrap):
* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars):
* lisp/ob-haskell.el (org-babel-variable-assignments:haskell):
* lisp/ob-js.el (org-babel-variable-assignments:js):
* lisp/ob-latex.el (org-babel-expand-body:latex):
* lisp/ob-lilypond.el (org-babel-expand-body:lilypond):
* lisp/ob-lisp.el (org-babel-expand-body:lisp):
* lisp/ob-maxima.el (org-babel-maxima-expand):
* lisp/ob-ocaml.el (org-babel-variable-assignments:ocaml):
* lisp/ob-octave.el (org-babel-variable-assignments:octave):
* lisp/ob-org.el (org-babel-expand-body:org):
* lisp/ob-perl.el (org-babel-variable-assignments:perl):
* lisp/ob-picolisp.el (org-babel-expand-body:picolisp):
* lisp/ob-processing.el (org-babel-variable-assignments:processing):
* lisp/ob-python.el (org-babel-variable-assignments:python):
* lisp/ob-ruby.el (org-babel-variable-assignments:ruby):
* lisp/ob-scheme.el (org-babel-expand-body:scheme):
* lisp/ob-shell.el (org-babel-variable-assignments:shell):
* lisp/ob-shen.el (org-babel-expand-body:shen):
* lisp/ob-sql.el (org-babel-expand-body:sql):
* lisp/ob-sqlite.el (org-babel-expand-body:sqlite): Adapt to change.
* etc/ORG-NEWS: Document change.
2015-10-29 19:26:11 +00:00
Nicolas Goaziou 7706714200 Switch some Babel-related libraries to lexical binding
* lisp/ob-sed.el:
* lisp/ob-shen.el:
(org-babel-execute:shen):
* lisp/ob-sql.el:
(org-babel-prep-session:sql):
* lisp/ob-sqlite.el:
(org-babel-execute:sqlite):
(org-babel-prep-session:sqlite):
* lisp/ob-stan.el:
(org-babel-prep-session:stan):
* lisp/ob-table.el: Switch some libraries to lexical binding.
2015-10-26 16:58:34 +01:00
Paul Eggert c86a10b0bc Backport commit 284c470 from Emacs master branch
Backslash cleanup in Elisp source files
284c470ef752967fcd8bae6a450dc138462b1e49
Paul Eggert
Thu Sep 17 16:09:39 2015 -0700
2015-09-21 18:38:39 -04:00
Paul Eggert ecf3a4af2c Backport remaining changes from commit 7e09ef0
Add changes from Emacs repo that should have been backported with
bb77dd2.

Update copyright year to 2015
7e09ef09a479731d01b1ca46e94ddadd73ac98e3
Paul Eggert
Thu Jan 1 14:26:41 2015 -0800
2015-08-10 02:17:19 -04:00
Saulius Menkevičius 187dae0ab1 ob-sql: Add possibility to set dbport
* lisp/ob-sql.el (org-babel-sql-dbstring-mysql): Change type
signature to accept server port number too.
(org-babel-execute:sql) Will now recognize the dbport parameter.
Passed to `org-babel-sql-dbstring-mysql' only for now.

TINYCHANGE
2015-04-07 22:24:59 +02:00
Steven Rémot e228cd1060 ob-sql.el: Clean mysql parameters generation
* lisp/ob-sql.el (dbstring-mysql): Rename function and tweak a bit its
  implementation
  (org-babel-execute:sql): Use new function name

Prefix `dbstring-mysql' function with the namespace "org-babel-sql" to
avoid name collisions.

Also replace the call to `remq' by `delq' because it is a bit more
efficient, and also to be consistent with
`org-babel-sql-dbstring-postgresql'.
2014-09-20 23:06:40 +02:00
Steven Rémot e5e9fc974d ob-sql.el: Enhance postgresql support
* lisp/ob-sql.el (org-babel-sql-dbstring-postgresql): New function
  (org-babel-execute:sql): Use new function.

Before this patch, it was necessary to use :cmdline parameter to
specify host, user and database different the the default ones.  Now,
this can be done using parameters that are independents of the engine
used.

This is not trivial (and not recommended) to pass password as a
command line argument to psql, so :dbpassword is not supported.
2014-09-20 23:06:36 +02:00
Eric Schulte 8285763b97 update psql command to respect :colnames
Suggested by Joost Helberg on the Mailing list.

TINYCHANGE

* lisp/ob-sql.el (org-babel-execute:sql): Update psql command to
  respect :colnames.
2014-01-08 09:57:40 -07:00
Bastien Guerry f8e1745440 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-07 14:19:03 +01:00
Bastien Guerry 7d9a883b50 Update copyright years again.
Hint: copyright years are all updated in Emacs.
2014-01-07 14:18:17 +01:00
Bastien Guerry c41f5075ac Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-05 06:36:11 +01:00
Bastien Guerry 0beda99171 Revert "Update copyright years."
This reverts commit 21105594fc.
2014-01-05 06:28:07 +01:00
Bastien Guerry 096ff7e078 Merge branch 'maint'
Conflicts:
	contrib/lisp/org-favtable.el
2014-01-04 18:58:12 +01:00
Bastien Guerry 21105594fc Update copyright years. 2014-01-04 18:56:11 +01:00
Eric Schulte baa44f6542 add --set=\"ON_ERROR_STOP=1\" to psql execution
Thanks to Joost Helberg for suggesting this change.

* lisp/ob-sql.el (org-babel-execute:sql): Add
  --set=\"ON_ERROR_STOP=1\" to psql execution.
2013-12-01 11:07:16 -07:00
Bastien Guerry f95641c443 Backport changes from Emacs revs 115081 and 115082
2013-11-12  Stefan Monnier  <monnier@iro.umontreal.ca>

	Address some byte-compiler warnings.
	* ob-abc.el (org-babel-expand-body:abc): Use dolist.
	(org-babel-execute:abc): Fix regexp quoting.
	* ob-calc.el (org--var-syms): Rename from `var-syms'.
	* ob-lilypond.el (ly-compile-lilyfile): Remove redundant let-binding.
	* ob-table.el (sbe): Move debug declaration.
	* org-clock.el (org--msg-extra): Rename from `msg-extra'.
	* org.el (org-version): Avoid var name starting with _.
	(org-inhibit-startup, org-called-with-limited-levels)
	(org-link-search-inhibit-query, org-time-was-given)
	(org-end-time-was-given, org-def, org-defdecode, org-with-time):
	* org-colview.el (org-agenda-overriding-columns-format):
	* org-agenda.el (org-agenda-multi, org-depend-tag-blocked)
	(org-agenda-show-log-scoped):
	* ob-python.el (py-which-bufname, python-shell-buffer-name):
	* ob-haskell.el (org-export-copy-to-kill-ring):
	* ob-exp.el (org-link-search-inhibit-query):
	* ob-R.el (ess-eval-visibly-p):
	* ob-core.el (org-src-window-setup): Declare before use.
	(org-babel-expand-noweb-references): Remove unused `blocks-in-buffer'.
	* ox-odt.el (org-odt-hfy-face-to-css):
	* org-src.el (org-src-associate-babel-session, org-src-get-lang-mode):
	* org-bibtex.el (org-bibtex-get, org-bibtex-ask, org-bibtex)
	(org-bibtex-check):
	* ob-tangle.el (org-babel-tangle, org-babel-spec-to-string)
	(org-babel-tangle-single-block, org-babel-tangle-comment-links):
	* ob-table.el (sbe):
	* ob-sqlite.el (org-babel-sqlite-expand-vars):
	* ob-sql.el (org-babel-sql-expand-vars):
	* ob-shen.el (org-babel-execute:shen):
	* ob-sh.el (org-babel-execute:sh, org-babel-sh-evaluate):
	* ob-scala.el (org-babel-scala-evaluate):
	* ob-ruby.el (org-babel-ruby-table-or-string)
	(org-babel-ruby-evaluate):
	* ob-python.el (org-babel-python-table-or-string)
	(org-babel-python-evaluate-external-process)
	(org-babel-python-evaluate-session):
	* ob-picolisp.el (org-babel-execute:picolisp):
	* ob-perl.el (org-babel-perl-evaluate):
	* ob-maxima.el (org-babel-execute:maxima):
	* ob-lisp.el (org-babel-execute:lisp):
	* ob-java.el (org-babel-execute:java):
	* ob-io.el (org-babel-io-evaluate):
	* ob-haskell.el (org-babel-execute:haskell):
	* ob-fortran.el (org-babel-execute:fortran):
	* ob-exp.el (org-babel-exp-code):
	* ob-emacs-lisp.el (org-babel-execute:emacs-lisp):
	* ob-ditaa.el (org-babel-execute:ditaa):
	* ob-core.el (org-babel-execute-src-block, org-babel-sha1-hash)
	(org-babel-parse-header-arguments, org-babel-reassemble-table)
	(org-babel-goto-src-block-head, org-babel-mark-block)
	(org-babel-expand-noweb-references, org-babel-script-escape)
	(org-babel-process-file-name):
	* ob-clojure.el (org-babel-execute:clojure):
	* ob-calc.el (org-babel-execute:calc):
	* ob-awk.el (org-babel-execute:awk):
	* ob-abc.el (org-babel-execute:abc):
	* ob-R.el (org-babel-expand-body:R):
	* ob-C.el (org-babel-C-execute): Avoid deprecated ((lambda) ...).

2013-11-12  Glenn Morris  <rgm@gnu.org>

	* ox-html.el (org-html-scripts): Add 2013 to copyright years.
	(org-html-infojs-template): Copyright holder to FSF.
2013-11-12 20:57:31 +01:00
Bastien Guerry 1fb57438bd Fix code typo in commit 78b3a0 2013-03-20 07:46:53 +01:00
Rick Frankel 78b3a03981 Fix issue with dbi processing in ob-sql.
* lisp/ob-sql.el (org-babel-execute:sql): Unquote cmdline argument in
  format string, dbish requires three separate arguments. Add dbi to
  the list of engines with automatically added header separator.
2013-03-19 16:51:42 -04:00
Bastien Guerry f8e87473d7 ob-sql.el (org-babel-execute:sql): Add header row delimiter for both mysql and postgresql
* ob-sql.el (org-babel-execute:sql): Add header row delimiter
for both mysql and postgresql.

Thanks to Daniel for reporting this.
2013-02-24 09:15:02 +01:00
Eric Schulte cb3e647734 org-babel-eval command instead of shell-command
* lisp/ob-sql.el (org-babel-execute:sql): Use the org-babel-eval command
  instead of shell-command.
2013-02-09 14:18:24 -07:00
Gary Oberbrunner e2b17ccc52 Improvements to Org SQL support
* add a header-row delimiter to the tables returned from mysql
 * add new sql-specific header args for the database connection, and implements them for mysql
 * add support for :colnames (mysql only)
 * (minor) add an edebug spec to org-babel-result-cond to allow edebugging through it
 * add some doc about what header args are used
2013-02-09 14:11:45 -07:00
Bastien Guerry 5fc740a230 Merge branch 'maint' 2013-01-08 15:04:40 +01:00
Bastien Guerry 72bc144c15 Update Copyright lines to match Emacs format. 2013-01-08 15:04:32 +01:00
Bastien Guerry 60b23bdeac Merge branch 'maint'
Conflicts:
	contrib/lisp/htmlize.el
	etc/schema/od-manifest-schema-v1.2-os.rnc
	etc/schema/od-schema-v1.2-os.rnc
	lisp/org-exp-blocks.el
2013-01-01 16:06:17 +01:00
Bastien Guerry 98cd4687a2 Update copyright years.
Happy new year!
2013-01-01 16:04:24 +01:00
Eric Schulte 78cdf14939 org-babel-result-cond - unified handling of results
* lisp/ob.el (org-babel-result-cond): This function should now be used
  by all language backends to handle the processing of raw code block
  output into scalar results, table results, or ignored results
  depending on the value of result-params.

* lisp/ob-C.el (org-babel-C-execute): Use org-babel-result-cond.
* lisp/ob-R.el (org-babel-R-evaluate-external-process): Use
  org-babel-result-cond.
  (org-babel-R-evaluate-session): Use org-babel-result-cond.
* lisp/ob-awk.el (org-babel-execute:awk): Use org-babel-result-cond.
* lisp/ob-clojure.el (org-babel-execute:clojure): Use
  org-babel-result-cond.
* lisp/ob-emacs-lisp.el (org-babel-execute:emacs-lisp): Use
  org-babel-result-cond.
* lisp/ob-fortran.el (org-babel-execute:fortran): Use
  org-babel-result-cond.
* lisp/ob-io.el (org-babel-io-evaluate): Use org-babel-result-cond.
* lisp/ob-java.el (org-babel-execute:java): Use org-babel-result-cond.
* lisp/ob-lisp.el (org-babel-execute:lisp): Use org-babel-result-cond.
* lisp/ob-maxima.el (org-babel-execute:maxima): Use
  org-babel-result-cond.
* lisp/ob-picolisp.el (org-babel-execute:picolisp): Use
  org-babel-result-cond.
* lisp/ob-python.el (org-babel-python-evaluate-external-process): Use
  org-babel-result-cond.
  (org-babel-python-evaluate-session): Use org-babel-result-cond.
* lisp/ob-scala.el (org-babel-scala-evaluate): Use org-babel-result-cond.
* lisp/ob-sh.el (org-babel-sh-evaluate): Use org-babel-result-cond.
* lisp/ob-shen.el (org-babel-execute:shen): Use org-babel-result-cond.
* lisp/ob-sql.el (org-babel-execute:sql): Use org-babel-result-cond.
* lisp/ob-sqlite.el (org-babel-execute:sqlite): Use
  org-babel-result-cond.
2012-11-18 21:58:38 -07:00
Bastien Guerry 5fc07bce0a Declare functions and variables. 2012-10-02 11:19:29 +02:00
Bastien Guerry 09743f48d6 Fix many small typos. 2012-08-13 05:59:44 +02:00
Bastien Guerry 70dd1196d2 Massive code clean-up.
Delete trailing whitespaces.
Indent all sexps correctly.
Sentences end with double spaces.
2012-08-11 19:10:44 +02:00
Rick Frankel eed31ad936 Add dbi support to sql babel mode
* lisp/ob-sql.el: add dbi engine type and pre/post processing
2012-05-16 19:50:43 -04:00
Eric Schulte 5e4cffbb06 code-block languages may specify their own headers and values
* lisp/ob-R.el (org-babel-header-args:R): Adding values.
* lisp/ob-clojure.el (org-babel-header-args:clojure): Adding values.
* lisp/ob-lisp.el (org-babel-header-args:lisp): Adding values.
* lisp/ob-sql.el (org-babel-header-args:sql): Adding values.
* lisp/ob-sqlite.el (org-babel-header-args:sqlite): Adding values.
* lisp/ob.el (org-babel-combine-header-arg-lists): Combine lists of
  arguments and values.
  (org-babel-insert-header-arg): Use new combined header argument
  lists.
  (org-babel-header-arg-expand): Add support for completing-read
  insertion of header arguments after ":"
  (org-babel-enter-header-arg-w-completion): Completing read insertion
  of header arguments
  (org-tab-first-hook): Adding header argument completion.
  (org-babel-params-from-properties): Combining header argument lists.
* testing/lisp/test-ob.el (ob-test/org-babel-combine-header-arg-lists):
  Test the new header argument combination functionality.
2012-04-13 08:43:16 -04:00
Bastien Guerry ecd0562c5f Fix the master branch.
I started from the 78ec8e commit then cherry-picked and squashed
commits that have been done in master since then, except the bad
commits that overwrote the tree (in master) with the tree in maint.

This commit also bumps the version number to 7.8.06.

The only "fix" that was made between 78ec8e and the previous commit
is e0072f which has been reported to break stuff.
2012-03-19 22:01:29 +01:00
Bastien Guerry 6e306f65ff Fix copyright years in maint. 2012-03-17 16:31:04 +01:00
Bastien Guerry de42649f7b Manually revert maint to e85080.
e85080 is the last correct commit in the maint branch
before releasing 7.8.04.  The 7.8.05 release should be
done from this commit.
2012-03-17 16:28:46 +01:00
Bastien Guerry 73bb18ba37 Manually revert to the Release 7.8.04 tag. 2012-03-17 15:52:24 +01:00
Bastien Guerry 38c5045725 Fix copyright years. 2012-03-17 14:36:25 +01:00
Bastien Guerry 6e534f9c61 Manually revert back to commit e85080.
This fixes a wrong merge that should not have happened:
commit 7e903a merges the master branch into the maint branch,
while we really want to keep the maint branch a bugfix-only
branch.

This commit reverts back the maint branch to its state before
merging the master branch.  From there, we will fix remaining
problems with the maint branch (e.g. copyright issues) then
release this maint branch as Org-mode 7.8.05.
2012-03-17 14:34:01 +01:00
Viktor Rosenfeld bd3b1aee2f add support for MonetDB to SQL code blocks
* lisp/ob-sql.el(org-babel-execute:sql): Add support for MonetDB to
  SQL code blocks.

  Hi,

  the attached patch adds support for evaluating SQL blocks on MonetDB.
  The MonetDB client normally requires the password to be inputted on the
  console. To get around this, you have to use a dotfile ~/.monetdb with
  authentification data. Note that this file is ignored if you specify a
  user on the cmdline. See
  http://www.monetdb.org/Documentation/mclient-man-page for details.

  A usage example follows.

  Setup MonetDB test database and authentification data

  #+BEGIN_SRC sh :results output verbatim
  MONETDB_DIR=$HOME/unix/var/monetdb/demodb
  monetdbd create $MONETDB_DIR
  monetdbd start $MONETDB_DIR
  monetdb create demodb
  monetdb release demodb
  cat > ~/.monetdb <<EOF
  user=monetdb
  password=monetdb
  EOF
  #+END_SRC

  #+RESULTS:
  : created database in maintenance mode: demodb
  : taken database out of maintenance mode: demodb

  Data is returned without column names (the default return format
  cannot be parsed by Babel).

  #+BEGIN_SRC sql :engine monetdb :cmdline demodb
  CREATE TABLE foo ( bar INTEGER );
  SELECT 'Table count', count(*) FROM foo;
  #+END_SRC

  #+RESULTS:
  | Table count | 0 |

  The parameter "-i" is required on the command line in order to use
  special client commands. Also note that a newline is required at the
  end if the last line contains a special client command.

  #+BEGIN_SRC sql :engine monetdb :cmdline demodb -i :results output
  verbatim
  \d
  \?

  #+END_SRC

  #+RESULTS:
  #+begin_example
  TABLE  sys.foo
  \?      - show this message
  \<file  - read input from file
  \>file  - save response in file, or stdout if no file is given
  \|cmd   - pipe result to process, or stop when no command is given
  \h      - show the readline history
  \D table- dumps the table, or the complete database if none given.
  \d[Stvsfn]+ [obj] - list database objects, or describe if obj given
  \A      - enable auto commit
  \a      - disable auto commit
  \e      - echo the query in sql formatting mode
  \f      - format using a built-in renderer {csv,tab,raw,sql,xml}
  \w#     - set maximal page width (-1=unlimited, 0=terminal width,
  >0=limit to num)
  \r#     - set maximum rows per page (-1=raw)
  \L file - save client/server interaction
  \X      - trace mclient code
  \q      - terminate session
  #+end_example

  Have fun!
2012-02-25 09:44:18 -07:00
Eric Schulte ebfef5c0a5 Merge branch 'origin-maint' 2012-02-18 09:26:12 -07:00
Eric Schulte e744db1ad1 mention ob-sqlite in the comments of ob-sql
* lisp/ob-sql.el: Mention ob-sqlite in the comments of ob-sql.
2012-02-18 09:26:02 -07:00
Bastien Guerry f6d7b32bf2 Fix trailing whitespaces. 2012-01-04 16:20:04 +01:00
Bastien Guerry e44d2975ff Fix copyright (to 2012) year and Org version (to 7.8.03). 2012-01-03 18:47:01 +01:00
Eric Schulte a5cbe6a6cb adding list of SQL specific header argument names which should be inherited
* lisp/ob-sql.el (org-babel-header-arg-names:sql): SQL specific header
  argument names which should be inherited.
2011-10-26 06:20:12 -06:00
Eric Schulte 92a01caa6d ob-sql: insert into a temporary buffer
* lisp/ob-sql.el (org-babel-execute:sql): Insert into a temporary
  buffer.
2011-10-19 12:07:48 -06:00
Eric Schulte faaa881c50 ob-sql returns literal results when requested
* lisp/ob-sql.el (org-babel-execute:sql): Respect literal-results options.
2011-10-18 10:15:04 -06:00
Bastien Guerry 58f1dbccf8 Remove the "Version" header in Org libraries (leave it in org.el).
Also remove blank lines before the ";;; org*el ends here" declarations.

Having a "Version" header forced us to update every file when releasing a
new version of Org; it also forced us to update every file when merging Org
with Emacs trunk, thus cluttering the diffs between the previously merged
version and the new one with useless information.

Glenn Morris suggested this in emacs-devel:
http://lists.gnu.org/archive/html/emacs-devel/2011-08/msg00322.html
2011-08-17 14:42:34 +02:00
Bastien Guerry 7a18799e25 Remove arch-tag at the bottom of files. 2011-08-15 20:04:38 +02:00
Bastien Guerry 904ed18bc2 Fix copyright years for elisp files in core and contrib.
Also add "This file is not part of GNU Emacs." when this is the case.
2011-08-15 15:23:11 +02:00
emacs 7340cee33a Update website to show 7.7 as current release 2011-07-28 10:33:35 +00:00
Bastien Guerry 9c05a7c781 Bump to version 7.6 2011-07-06 21:06:03 +02:00