lisp/ob-shell.el (org-babel-sh-evaluate): Use `process-file' (instead
of `call-process-shell-command') so that `org-babel-sh-evaluate' will
invoke file name handlers based on `default-directory', if needed,
like when using a remote directory.
lisp/org-compat.el (with-connection-local-variables): New
compatibility macro.
testing/lisp/test-ob-shell.el (ob-shell/remote-with-stdin-or-cmdline):
New test.
testing/org-test.el (org-test-with-tramp-remote-dir): New macro.
Fixes https://list.orgmode.org/CKMOBWBK709F.1RUN69SRWB64U@laptop/.
* lisp/org.el (org--open-file-format-command): New function with better
coverage of mailcap RFC 1524 syntax. Do not replace percent character
in file name or link component, fix substitution of multiple regular
expression groups matched in the link target.
(org-open-file): Use `org--open-file-format-command' instead of inline
code.
* testing/lisp/test-org.el (org-test/org--open-file-format-command):
Tests for `org--open-file-format-command'.
The primary goal of moving code outside of `org-open-file' function is to
make it testable.
It should fix the following issues:
- Maxim Nikulin. greedy substitution in org-open-file.
Wed, 20 Jan 2021 23:08:35 +0700.
https://list.orgmode.org/ru9ki4$t5e$1@ciao.gmane.io
- Rodrigo Morales. Org mode links: Open a PDF file at a given page
and highlight a given string. Tue, 02 Mar 2021 15:07:32 -0500.
https://list.orgmode.org/87lfb5pbej.fsf@gmail.com
* lisp/ob-ref.el (org-babel-ref-resolve): Add support for
`named-block[]' syntax, resolving to the contents of a named-block.
* lisp/ob-core.el (org-babel-read-element): Read a code block into its
contents, like other blocks.
* testing/listp/test-ob.el (test-ob/block-content-resolution): Test
block content resolution.
* doc/org-manual.org: Document syntax.
* etc/ORG-NEWS: Document syntax.
* lisp/ol-info.el (org-info--link-file-node): New helper to parse info
link info file (manual) name and node.
(org-info-follow-link, org-info-export): Use `org-info--link-file-node'.
(org-info-description-as-command): New function to create description
for info links that may executed to view the manual.
(org-link-parameters): Specify `org-info-description-as-command' as
`:insert-description' for info links.
(org-info-other-documents): Add URL of directory index.
* testing/lisp/test-org-info.el (test-org-info/export): Add cases for
texinfo export with link description.
(test-org-info/link-file-node, test-org-info/description-as-command):
New tests for new functions `org-info--link-file-node' and
`org-info-description-as-command'.
Use recently added :insert-description feature of `org-link'.
Alternative separators between file name and node ":", "::", "#:"
are preserved. Added interpretation of empty path or omitted
file name as info dir index.
* lisp/ob-tangle.el: Refactor the double implementation to a single
helper function. This avoids the double link wrapping.
* testing/lisp/test-ob-tangle.el: Add unit tests.
Babel tangle allows inserting comments at the tangled site which link
back to the source in the org file. This linking was implemented
twice, to handle separate cases, but when using ‘:comments noweb’ it
ended up going through both codepaths. This resulted in doubly
wrapped links.
By refactoring all link generation into a single function, this double
wrapping is avoided.
Example file, /tmp/test.org:
* Inner
#+name: inner
#+begin_src emacs-lisp
2
#+end_src
* Main
#+header: :tangle test.el :comments noweb :noweb yes
#+begin_src emacs-lisp
1
<<inner>>
#+end_src
Before:
;; [[file:test.org::*Main][Main:1]]
1
;; [[[[file:/tmp/test.org::inner][inner]]][inner]]
2
;; inner ends here
;; Main:1 ends here
After:
;; [[file:test.org::*Main][Main:1]]
1
;; [[file:test.org::inner][inner]]
2
;; inner ends here
;; Main:1 ends here
* test-ol (test-ol-with-link-parameters-as): Convenience macro for
testing.
(test-ol-insert-link-get-desc): Convenience macro for testing.
(test-ol/return-foobar): Convenience function for testing.
(test-ol/insert-link-insert-description): Test for various values of
`:insert-description' in `org-link-parameters' (including
`test-ol/return-foobar').
This reverts commit e22b4eb7aa.
See
https://list.orgmode.org/87r11wkmew.fsf@ucl.ac.uk/T/#mab6359ed2107d5515c6bb6b266551f0c5049ceca
The problem with the commit is that correctly loading local variables
early requires re-implementing all the built-in tricks done by Emacs,
like not enabling local variables in temp buffers or non-file buffers.
In addition, even if we call `hack-local-variables' manually, Emacs
will repeat the normal call later, possibly asking for non-safe
variables twice.
In conclusion, the whole idea of manual triggering local variables is
fragile and should better be handled by Emacs itself via stable API.
testing/.dir-locals.el is kept.
* lisp/org.el (org-mode): Call `hack-local-variables' early during Org
mode startup. This way, Org startup options will regard local
variable settings.
* testing/.dir-locals.el: Create a stub dir-locals file to prevent
tests from being affected by directory-local settings of the root Org
repo folder.
Fixes
https://list.orgmode.org/587be554-906c-5370-2cf2-f08b14fa58ff@gmail.com/T/#u
* testing/lisp/test-ol.el (test-ol/encode): Rename to
`test-org-link/encode'.
(test-ol/decode): Rename to `test-org-link/decode'.
(test-ol/encode-url-with-escaped-char): Rename to
`test-org-link/encode-url-with-escaped-char'.
(test-ol/org-toggle-link-display): Rename to
`test-org-link/toggle-link-display'.
(test-ol/escape): Rename to `test-org-link/escape'.
(test-ol/unescape): Rename to `test-org-link/unescape'.
(test-ol/make-string): Rename to `test-org-link/make-string'.
(test-ol/store-link): Rename to `test-org-link/store-link'.
(test-ol/update-radio-target-regexp): Rename to
`test-org-link/update-radio-target-regexp'.
(test-ol/next-link): Rename to `test-org-link/next-link'.
(test-ol/previous-link): Rename to `test-org-link/previous-link'.
(test-ol/plain-link-re): Rename to `test-org-link/plain-link-re'.
Only `test-ol/org-toggle-link-display' was executed during
"make test" since it is the only name matched by the "org|ob" default
selector. Reported in: Ihor Radchenko to emacs-orgmode.
Re [PATCH v7] ol.el: add description format parameter
to org-link-parameters. Sun, 24 Jul 2022 21:15:31 +0800.
https://list.orgmode.org/87v8rmd53g.fsf@localhost/
* lisp/org-plot.el (org-plot/gnuplot): Do not use `if-let'.
* lisp/ox-ascii.el (org-ascii--describe-links):
* lisp/ox-md.el (org-md--headline-referred-p): Do not use
`ignore-error'.
* testing/org-test.el (org-test-at-time): Fallback to older definition
of `decode-time' when it cannot accept 3 arguments.
* testing/lisp/test-ox.el: Bind `org-resource-download-policy' to t when
testing downloading.
* testing/lisp/test-org.el: Bind `org-resource-download-policy' to t
when testing downloading.
* testing/lisp/test-org.el (test-org/org-time-string-to-time):
Check that no daylight saving time value is forced for
`org-parse-time-string' and `org-encode-time' calls.
* lisp/ol.el (org-store-link):
* lisp/org-agenda.el (org-agenda-get-timestamps)
(org-agenda-get-progress, agenda-bulk-action):
* lisp/org-capture.el (org-capture-fill-template):
* lisp/org-clock.el (org-clock-get-sum-start)
(org-clock-special-range, org-clocktable-shift)
(org-clocktable-steps):
* lisp/org-colview.el (org-colview-construct-allowed-dates):
* lisp/org-datetree.el (org-datetree-find-iso-week-create)
(org-datetree-insert-line):
* lisp/org-element.el (org-element-timestamp-interpreter):
* lisp/org-macro.el (org-macro--vc-modified-time):
* lisp/org-macs.el (org-matcher-time):
* lisp/org.el (org-current-time, org-current-effective-time)
(org-add-planning-info, org-read-date, org-read-date-display)
(org-read-date-analyze, org-eval-in-calendar)
(org-calendar-select, org-display-custom-time)
(org-calendar-select-mouse, org-time-string-to-time)
(org-time-from-absolute, org-at-clock-log-p)
(org-date-from-calendar, org-get-cursor-date)
(org-timestamp-to-time):
* testing/lisp/test-org-clock.el (org-test-clock-create-timestamp):
* lisp/ox-icalendar.el (org-icalendar-convert-timestamp):
Avoid direct calls of `encode-time', use `org-encode-time' instead.
Org supports Emacs-26, but the recommended way to call `encode-time'
changed in Emacs-27. In Emacs-29 DST and TZ elements of the single list
arguments became optional. In Org it is still convenient to call the
function with separate arguments without explicit DST and TZ arguments.
The `org-encode-time' should mitigate attempts to modernize Org code
directly in the Emacs repository.
* lisp/org-macs.el (org-encode-time): New compatibility and convenience
helper macro to allow a list for time components or separate arguments
independently of Emacs version.
* testing/lisp/test-org.el (org-test-with-timezone): New macro to ensure
that some code is executed with certain TZ environment value and thus
particular daylight saving time or other time shift rules are active.
* testing/lisp/test-org.el (test-org/org-encode-time): Tests for various
ways to call `org-encode-time'.
Ensure recommended way to call `encode-time' for Emacs-27 and newer with
hope to avoid bugs due to attempts to modernize the code similar to
bug#54731. 6-elements list may be allowed as `encode-time' argument
since Emacs-29, see bug#54764.
* testing/lisp/test-org.el (test-org/org-read-date, test-org/deadline)
(test-org/schedule, test-org/time-stamp, test-org/timestamp-from-time):
* testing/org-test.el (org-test-at-time): Use `org-time-string-to-time'
instead of composition of `org-parse-time-string' and `encode-time'.
The actual goal is to prepare to replace `encode-time' by
`org-encode-time' compatibility and convenience macro.
* testing/lisp/test-org.el (ert-deftest test-org/org-parse-time-string):
Update test expectations to use DST of -1 (guess) after fix of
`org-parse-time-string'.
* testing/lisp/test-org-clock.el (org-test-clock-create-timestamp):
Do not change timezone from nil to 0. Prevent test failures in zones
other than UTC.
*
testing/lisp/test-org-fold.el (test-org-fold/org-fold-reveal-broken-structure):
Test `org-delete-char' instead of `delete-char'. The former is the
function used interactively.
* lisp/org.el (org-setup-filling): Set fill-forward-paragraph-function.
(org--single-lines-list-is-paragraph): New internal variable. Whether
a list with single lines items should be considered a single
paragraph.
(org--paragraph-at-point): use org--single-lines-list-is-paragraph.
(org-fill-paragraph): When an active region contains a list ensure
every item get filled.
* testing/lisp/test-org.el (test-org/fill-paragraph):
(test-org/fill-region): Test behaviour of fill-paragraph and
fill-region with an active region containing a list.
When filling paragraphs in a region, do not treat a list with single
lines items as a single paragraph.
* lisp/org-list.el (org-cycle-list-bullet): Keep point position
relative to bullet beginning/end when changing the list bullet.
* testing/lisp/test-org-list.el (test-org-list/cycle-bullet): Add
tests.
Fixes https://orgmode.org/list/m2wndjfi32.fsf@gmail.com
* lisp/ob-exp.el (org-babel-exp-src-block): New optional argument
providing ELEMENT at point.
(org-babel-exp-code-template): Use lower-case #+begin/#+end lines to
avoid triggering source code block changes when the blocks are
exported with :exports code and also contain lower-case
#+begin/#+end. We prefer lower-case default because other parts of
Org, like `org-insert-structure-template' default to lower-case as
well.
(org-babel-exp-process-buffer): Do no disable cache as changes are not
expected to be as frequent anymore. Pass pre-calculated element at
point to inner function calls to `org-in-commented-heading-p',
`org-in-archived-heading-p', `org-element-context', and
`org-babel-exp-src-block'. Do not force-replace source block contents
when no change is required.
* testing/lisp/test-ob-exp.el (ob-export/export-with-results-before-block):
(ob-export/body-with-coderef):
(ob-exp/src-block-with-affiliated-keyword): Update tests according to
the new `org-babel-exp-code-template'.
* ob-core.el (org-babel-merge-params): Specifying the symbol 'attach`
or string "'attach" as the value of the `:dir' header now functions as
":dir (org-attach-dir nil t) :mkdirp t".
(org-babel-result-to-file): Optional TYPE argument accepts symbol
'attachment to fixup up paths under `(org-attach-dir)' and use the
link type "attachment:" when that is detected.
(org-babel-insert-result): Pass symbol `attachment' as TYPE to
`org-babel-result-to-file'.
* org-attach.el (org-attach-dir): Added autoload header to simplify
dependencies necessary to support this feature (called in
`org-babel-merge-params').
* test-ob.el (test-ob-core/dir-attach): Added unit test for the new
attach feature.
* lisp/org-list.el (org-list-struct-apply-struct): Make sure the
origin marker is not moved to bol when promoting/demoting item in
special case:
- item
- <point> ::
Do not remove the trailing space after point as well.
(org-insert-item): Do not expect point to remain at bol after writing
list struct.
* testing/lisp/test-org-list.el (test-org-list/indent-item): Add tests.
Fixes https://orgmode.org/list/87o88hlkvv.fsf@gmail.com
* lisp/ol.el (org-update-radio-target-regexp): Sort radio targets
before building the regexp that matches them.
* testing/lisp/test-org.el: Test shadowed radio targets. The bug
occurs when two targets share the same prefix and when and the longer
target appears first.
* lisp/org.el (org-property-separators, org-property-get-separator):
Created.
(org-entry-get, org-entry-get-with-inheritance): Use new
`org-property-get-separator' function.
* testing/lisp/test-org.el (test-org/entry-get): Added tests for
combining properties with custom separators
`org-property-separators' is a customization option that allows for
properties to be combined using a separator other than the default (a
single space). It is an alist with the car of each element being a
list of property names or regular expression and the cdr being the
separator string, like '((("EXPORT_FILE_NAME") . "/")).
* lisp/org.el (org--deadline-or-schedule): Match warning period if
provided in TIME arg.
* testing/lisp/test-org.el (test-org/deadline): Add relevant tests.
Fixes https://orgmode.org/list/87o85bl582.fsf@localhost
* lisp/org-element.el (org-element--current-element): Use
`org-element-dynamic-block-open-re' to match blocks.
* testing/lisp/test-org-element.el (test-org-element/paragraph-parser):
Fix test relying on previous incorrect behaviour. Empty #+BEGIN:
should be parsed as a keyword.
Reported in https://list.orgmode.org/Ycay4s3iAdEGSwgt@tuxteam.de/T/#t
* lisp/ox-latex.el (org-latex-src-block, org-latex-keyword,
org-latex-inline-src-block, org-latex-template,
org-latex--caption/label-string, org-latex-engraved-preamble,
org-latex-listings): Replace `org-latex-listings' with
`org-latex-src-block-backend', which now can be set to listings/verbatim
and no longer advertises t/nil as valid values.
* lisp/ox-beamer.el (org-beamer-template): Update in the same manner as
`org-latex-template'.
* lisp/org-compat.el: Make `org-latex-listings' an obsolete alias for
`org-latex-src-block-backend'.
* testing/lisp/test-ox.el: Replace `org-latex-listings' reference with
`org-latex-src-block-backend'.
* doc/org-manual.org (Footnotes, LaTeX specific properties, Literal
Examples): Replace references to `org-latex-listings' with
`org-latex-src-block-backend'.
* etc/ORG-NEWS: Add a news entry noting this change.
The variable `org-latex-listings' originally indicated whether source
blocks should use the listings LaTeX package, or not. This usage has
evolved over the years, and now it sets one of four different
fontification backends. This renaming should make the variable name a
bit less misleading.
* lisp/org-fold-core.el (org-fold-core-folded-p): Allow list of fold
types to be passed as argument.
* lisp/org-fold.el (org-fold-check-before-invisible-edit--overlays):
(org-fold-check-before-invisible-edit--text-properties): Make
overlay/text-property behaviour consistent. Do not handle edits
inside folded links. Fix inconsistencies.
* testing/lisp/test-org-fold.el:
* testing/lisp/test-org.el: Move folding-related tests to new test
file.
* testing/lisp/test-org-fold.el:
(test-org-fold/org-catch-invisible-edits): New test.
See https://orgmode.org/list/m2o809q170.fsf@gmail.com
* testing/lisp/test-org-macs.el (ert-deftest test-org/fill-template):
There is a bug in `org-fill-template': it sorts and processes keys in
order of increasing length, so that "noweb" is seen before
"noweb-ref", and "tangle" before "tangle-mode". So in a template that
includes "%noweb-ref", it will substitute the value of "noweb".
This change includes a test for this bug.
TINYCHANGE
* lisp/org-clock.el (org-clock-in):
(org-clock-find-position):
(org-clock-out):
* lisp/org.el (org-add-planning-info):
(org-scan-tags):
(org-global-tags-completion-table):
(org-make-tags-matcher):
(org-tags-expand):
(org--property-local-values):
(org-read-date-analyze):
(org-revert-all-org-buffers):
(org-beginning-of-line): Make sure that we inherit invisible state
when inserting text.
(org-sort-entries): Preserve invisible state after replace-match.
(org-log-beginning): Do not try to move by visible lines.
* lisp/org-macs.el (org-preserve-local-variables): Do not try to
preserve overlays.
* lisp/ox.el (org-export--generate-copy-script): Preserve folding
properties in export buffer.
* testing/lisp/test-ob.el (test-ob/preserve-results-indentation): Fix
test failure.
* testing/lisp/test-org.el (test-org/meta-return):
(test-org/custom-properties): Use new folding.
* testing/lisp/test-org-agenda.el (test-org-agenda/property-timestamp):
Fix test that failed because of different behavior of agenda view
depending whether the view is called today (according to system date)
or not. Today's agenda (even called with custom date argument)
display the past scheduled items, while it is not the case for
non-today agendas.
* testing/lisp/test-org-agenda.el (test-org-agenda/one-line):
(test-org-agenda/scheduled-non-todo):
(test-org-agenda/non-scheduled-re-matces):
(test-org-agenda/property-timestamp):
(test-org-agenda/diary-inclusion):
(test-org-agenda/set-priority):
Add a note to warn future test developers about potential surprising
agenda behaviour.
* lisp/org-agenda.el (org-agenda-get-timestamps): Use
`org-at-timestamp-p' instead of org-element to check if at valid
timestamp. Agenda should consider timestamps inside node properties
even though they are not parsed by org-element.
* testing/lisp/test-org-agenda.el (test-org-agenda/property-timestamp):
Add new test checking active timestamp inside property drawer.
* testing/examples/agenda-file.org (test timestamp inside properties):
Add heading for `test-org-agenda/property-timestamp'.
Reported in https://list.orgmode.org/06d301d83d9e$f8b44340$ea1cc9c0$@tomdavey.com
* lisp/org.el (org-copy-visible): Decide whether text is invisible by
calling invisible-p rather than checking whether the invisible
property at point is non-nil.
Text may have a non-nil invisible property but _not_ be hidden from
the user (and thus should be copied by org-copy-visible). For
example, the link itself is shown when org-link-descriptive is nil,
but it still has an invisible property of `org-link'.
* lisp/org.el (org-copy-visible): Don't copy invisible text that
follows invisible text with a different property value.
If org-copy-visible sees that the left bound position has a non-nil
invisible property, it uses next-single-char-property-change to find
the new bound. However, next-single-char-property-change may just
find a bound that still has a _different_ non-nil invisible property.
Reported-by: "Максим Бабушкин" <maxbabushkin@gmail.com>
Link: https://debbugs.gnu.org/49967
* testing/lisp/test-org.el (test-org/copy-visible): Switch defun to
ert-deftest so that the test is actually executed, and resolve
failures in test.
Make two adjustments so that the now executed test passes:
- Correct the end value of the hidden part of the string for one
test case.
- Disable org-unfontify-region so that the invisible properties show
up in the temporary buffer.
I think org-unfontify-region should probably be changed to _not_
remove the invisible property, but it's a longstanding behavior.
Changing it would need more thought and isn't something that
should be done on the bugfix branch.
* lisp/org-list.el (org-list-send-item): Check if dest is a string
before matching it, to allow dest to be a buffer position.
* testing/lisp/test-org-list.el (test-org-list/send-item): Add tests.
* lisp/org-element.el (org-element-context): Use
`org-element-at-point', which makes use of cache.
* testing/lisp/test-org-element.el (test-org-element/lineage): Expect
full lineage up to org-data from `org-element-context'.
* testing/examples/agenda-file.org: Add test headings where SCHEDULED
line is not planning.
*
testing/lisp/test-org-agenda.el (test-org-agenda/non-scheduled-re-matces):
Make sure that SCHEDULED lines that do no belong to planning do not
trigger agenda matches.
See https://list.orgmode.org/20220101200103.GB29829@itccanarias.org/T/#t
* lisp/org-element.el (org-element--cache-for-removal): Consider
preceding keywords to be updated unconditionally.
(org-element-cache-map): Fix infinite loop revealed by the new test.
* testing/lisp/test-org-element.el (test-org-element/cache-affiliated):
New test.
* lisp/org-element.el (org-element-cache-map-continue-from): New
variable forcing `org-element-cache-map' to continue from a custom
point in buffer.
(org-element-cache-map): Add support for
`org-element-cache-map-continue-from'. Update docstring accordingly.
Also, make sure that mapping terminates correctly when FUNC deletes
all elements in buffer.
* testing/lisp/test-org.el (test-org/map-entries): Add test.
Fixes https://orgmode.org/list/CADywB5KOJ1p0NpvA=iX-ybHsO=huGA8qL3xMpUTETmS2qp7_ng@mail.gmail.com
* lisp/org-element.el (org-element--cache-after-change): Always extend
changed region to bol.
* testing/lisp/test-org-element.el (test-org-element/cache): Add test
checking the new fix. Amend some tests around making sure that cache
is active during testing.
* lisp/org-element.el (org-element--cache-after-change): Extend
changed region to bol when we are editing near beginning of an element
within or right after indentation. Such edits potentially change
:post-blank value of the previous element.
* testing/lisp/test-org-element.el (test-org-element/cache): Add test
checking one of such cases.
* testing/lisp/test-org-element.el (test-org-element/cache): Add new
tests checking against intersected elements and checking that Phase 2
removes obsolete elements.
* lisp/org-lint.el (org-lint-add-checker): New function.
(org-lint--generate-reports): Checker function now must be specified.
It is not deduced anymore from the name of the checker.
* testing/lisp/test-org-lint.el (test-org-lint/add-checker): New test.
* lisp/oc.el (org-cite-read-processor-declaration): New function.
(org-cite-store-export-processor): Use new function.
* testing/lisp/test-oc.el (test-org-cite/read-processor-declaration):
New test.
* testing/lisp/test-org-attach-git.el: Provide feature.
As of 9044b300e (org-test: Fix ERC errors using latest Emacs master,
2021-11-24), tests must provide a feature.
* testing/lisp/test-ob-C.el:
* testing/lisp/test-ob-awk.el:
* testing/lisp/test-ob-sed.el: Add missing provide.
* testing/lisp/test-property-inheritance.el: Fix incorrect feature
name.
* testing/org-test.el (org-test-load): Use `require' instead of
`load-file' to load tests. `load-file' can lead to duplicate test
definitions that now trigger ERC errors.
See https://lists.gnu.org/archive/html/bug-gnu-emacs/2021-11/msg01968.html
* lisp/oc.el (org-cite-main-affixes): New function.
* lisp/oc-natbib.el (org-cite-natbib--build-optional-arguments): Use
new function.
* testing/lisp/test-oc.el (test-org-cite/main-affixes): New test.
* lisp/org-macro.el (org-macro--collect-macros): Multiple lines are
allowed for AUTHOR keyword (per `org-export-options-alist') so make
sure we collect all of them.
* testing/lisp/test-org-macro.el (test-org-macro/author): Add test.
Reported-by: Vinicius Vinicius <vinicius.vin@yandex.com>
<http://lists.gnu.org/r/emacs-orgmode/2021-10/msg00727.html>
* lisp/org.el (org--collect-keywords-1): Use an accurate
function instead of an approximation. Accuracy trumps speed when parsing.
* testing/lisp/test-org.el (test-org/collect-keywords): New test.
* lisp/org-compat.el (org-file-name-concat): Do not use
`string-empty-p'.
(combine-change-calls): Create a stub when `combine-change-calls' were
not yet available.
(org-replace-buffer-contents): Add compatibility function for
`replace-buffer-contents'.
* lisp/org-element.el (org-element--current-element): Do not use
`if-let'.
* lisp/org-persist.el (org-persist-gc): Do not use `when-let'.
* lisp/org-plot.el (org-plot/gnuplot): Do not use `if-let'.
* lisp/org-src.el (org-edit-src-save, org-edit-src-exit): Use
`org-replace-buffer-contents'.
* lisp/org.el (org-narrow-to-subtree, org--property-local-values,
org-entry-get-with-inheritance, org-in-commented-heading-p,
org-up-heading-safe, org-goto-first-child): Do not use
`if-let'/`when-let'.
* testing/org-test.el (org-test-at-time): Fallback to old
`decode-time' specification in older Emacs.
* lisp/org-agenda.el (org-agenda-skip): Use
`org-in-archived-heading-p' and `org-in-commented-heading-p' in place
of text property cache.
(org-agenda-get-todos, org-agenda-get-timestamps,
org-agenda-get-sexps, org-agenda-get-progress,
org-agenda-get-deadlines, org-agenda-get-scheduled,
org-agenda-get-blocks): Do not use text property cache in favour of
Org API functions. The API functions use cache now.
* lisp/org-clock.el (org-element--cache-active-p): Declare function to
suppress compiler warning.
(org-clock-in): Do not use text property cache when element cache is
active.
* lisp/org-duration.el (org-duration-to-minutes): Do not change match
data. It is needed to not break agenda---agenda relies on match data
not being altered.
* lisp/org.el (org-run-like-in-org-mode): Use element cache.
(org-refresh-category-properties): Use element cache.
(org-make-tags-matcher, org-agenda-prepare-buffers): Do not rely on
text property cache.
* testing/lisp/test-org.el (test-org/refresh-category-properties): Do
not use text property cache.
* lisp/org-element.el (org-element-with-disabled-cache): New macro.
(org-element-greater-elements): Add new org-data element. It
functions like a virtual headline containing the whole buffer. The
org-data properties are like headlie properties, but according to the
top-level drawer. org-data's category is the buffer's category as
defined by top-level property drawer, #+CATEGORY keyworsd, and the
buffer file name.
(org-element--cache-element-properties, org-element-set-element): New
variable containing properties to be transferred when updating changed
element in cache in `org-element-set-element'.
(org-element--get-node-properties): Allow parsing node propreties in
top-level drawer when new optional argument is passed. Respect
PROPERTY+ syntax.
(org-element--get-global-node-properties): New function. It returns
node properties for top-level property drawer.
(org-element-org-data-parser, org-element-org-data-interpreter):
Implement the new org-data element.
(org-element-headline-parser, org-element-section-parser): Add new
:robust-begin and :robust-end
properties delimiting safe changes that do not modify headline
element.
(org-element--list-struct): Fix cache update when adding a headline
inside list.
(org-element--current-element): Implement cache support. Record
parsing mode (:mode) and parsing granularity (:granularity) in the
element properties.
(org-element-parse-buffer, org-element--next-mode): Support new
org-data element.
(org-element--parse-elements): Record parsing granularity in the
returned tree
(org-element-use-cache): Enable cache by default.
(org-element-cache-persistent): New variable controlling cache
persistance across sessions. Enabled by default.
(org-element--cache-self-verify,
org-element--cache-self-verify-frequency,
org-element--cache-diagnostics, org-element--cache-map-statistics,
org-element--cache-map-statistics-threshold,
org-element--cache-diagnostics-level,
org-element--cache-diagnostics-ring,
org-element--cache-diagnostics-ring-size): New variables controlling
cache diagnostics and self-diagnostics. Greatly simplifies cache
debugging.
(org-element--cache, org-element--cache-sync-requests,
org-element--cache-sync-timer): Make cache buffer-local by default.
(org-element--headline-cache): Implement separate cache storing only
headlines and inlinetasks.
(org-element--cache-size, org-element--headline-cache-size): New
variables containing cache sizes. This is much faster than
`avl-tree-size'.
(org-element--cache-sync-requests): Update docstring explaning the
request list structure.
(org-element--cache-sync-keys-value): New variable replacing
`org-element--cache-sync-keys' hash table. The hash table was not
reliable because it was using elements as keys. Upon any cached
element update/shift, the keys were invalidated making cache ordering
incorrect and breaking the cache badly. Now, the cache keys are
stored as :org-element--cache-sync-key element property and the new
variable stores marker value indicating the current sync request
cycle. See `org-element--cache-key' for more details.
(org-element--cache-change-tic): New variable controlling buffer
modification count that is registered in cache. This variable allows
catching "stealth" edits.
(org-element--cache-non-modifying-commands): New variable listing
commands that will not be slown down if we fill cache on the fly.
(org-element--request-key, org-element--request-beg,
org-element--request-end, org-element--request-offset,
org-element--request-parent, org-element--request-phase): New macros.
They improve code readability (especially when using nameless-mode).
(org-element--format-element, org-element--cache-log-message,
org-element--cache-warn): New macros implementing generic logging
functionality.
(org-element--cache-key): Add section and org-data element support.
Change cache key storage from hash map to :org-element--cache-sync-key
element property + `org-element--cache-sync-keys-value'. We use the
latter to group all the cache keys during a single cache request
sequence. Once sync request is fully complete, the
`org-element--cache-sync-keys-value' is updated making all the old
sync keys obsolete (they will still be store as element properties).
(org-element--headline-cache-root): New function returning headline
cache root.
(org-element--cache-active-p): Prevent cache updates when
`inhibit-modification-hooks' is non-nil, unless non-nil optional
argument is provided.
(org-element--cache-find): Share cache between indirect buffers and
the base buffer. We have to do it because after-change hooks for
indirect buffer are not called in the base buffer and vice versa. Add
support for section and org-data elements.
(org-element--cache-put): Implement new approach for cache key
storage. Add diagnostics. Indicate cached elements using :cached
element property. Support cache size calculation.
(org-element--cache-remove): Invalidate parent contents when removing
element. Support cache size calculation. Detect cache corruption due
to misordered elements.
(org-element--cache-shift-positions): Support :robust-begin and
:robust-end element properties.
(org-element--cache-sync): Add diagnostics. Add detailed comments.
Prevent slowdown when large cache chunks need to be deleted forcing
O(N) complexity cutoff. In phase 2, fix cases when next request
contains deleted cache key. In phase 2, fix scenario when newly
inserted element intersects with existing elements in cache. In phase
2, detect obsolete parents removed from cache.
(org-element--open-end-p): New function checking if an element can
have blank lines right after its :contents-end.
(org-element--parse-to): Do not alter match data. Process complex
parsing mode changes correctly. Support headlines in cache. Support
org-data parsing. Add detailed comments. Add diagnostics.
(org-element--cache-sensitive-re): Make list lines sensitive.
(org-element--cache-change-warning): Update docstring. Now, the
variable can have t, nil, and number values. Numbers are used to
provide more details about changed headlines.
(org-element--cache-before-change, org-element--cache-after-change):
Handle headline hierarchy. Properly handle cache in indirect
buffers.
(org-element--cache-after-change): Update docstring clarifying the
return values. Add special handling for headline and org-data
elements updating them in-place instead of removing together with the
whole contents when possible. Use :robust-begin/:robust-end element
properties to detect robust changes.
(org-element--cache-submit-request): Add detailed comments. Correctly
handle cache in indirect buffers. Delegate element modifications to
`org-element--cache-for-removal'.
(org-element--cache-verify-element): New function for cache
self-verification.
(org-element--cache-persist-before-write,
org-element--cache-persist-before-read,
org-element--cache-persist-after-read): Implement cache persistance.
(org-element-cache-reset): Correctly handle cache in indirect
buffers. Support cache persistance. Support new cache size
calculation and new cache key schema.
(org-element-cache-map): New function analagous to `org-element-map',
but much faster. The function overperforms org-ql written by Adam
Porter aka alphapapa [1] and reuses some ideas from there (namely,
fast element skipping via regexps).
[1] https://github.com/alphapapa/org-ql/
(org-element-at-point): The returned elements are now guaranteed to
have correct parents up to org-data. New optional argument
CACHED-ONLY limits element search to current cache---if element is not
in cache and current command is not in cache
`org-element--cache-non-modifying-commands', the cache is not updated
and the function returns nil. Also, support cache verification.
(org-element-at-point-no-context): New function. It is analogous of
older `org-element-at-point' with no guarantee that :parent properties
are correct beyond direct parent heading. This function does not
update cache and can be useful when cache updates should be avoided
for performance reasons.
* lisp/ob-core.el (org-babel-where-is-src-block-result): Support
section and org-data elements in cache.
* lisp/org-macro.el (org-macro-replace-all,
org-macro--find-keyword-value): Support org-element-cache.
* lisp/org-table.el (orgtbl-to-generic): Support org-element-cache.
* lisp/org.el (org-mode): Add cache persistance.
(org-up-element): Preserve old behaviour when error is returned for
section and org-data element.
*
testing/lisp/test-org-archive.el (test-org-archive/update-status-cookie):
Fix test when cache is active.
* testing/lisp/test-org-colview.el (test-org-colview/columns-update):
Fix test.
* testing/lisp/test-org-element.el (test-org-element/extract-element):
Add suport for new org-data element.
* testing/lisp/test-org-element.el (test-org-element/parent-property):
Fix equality check. Parents returned by cache and `org-element-map'
may not be `eq' now. Just `equal'.
* testing/lisp/test-org-element.el (test-org-element/context): Support
section and headline parents.
* lisp/oc.el (org-cite-process-citations): Add a space before citation
only if it is preceded by a quotation mark.
* testing/lisp/test-oc.el (test-org-cite/export-capability): Add
tests.
Reported-by: Denis Maier <denismaier@mailbox.org>
<http://lists.gnu.org/r/emacs-orgmode/2021-09/msg00085.html>
* lisp/org-macs.el (org-plist-delete-all): New function.
* lisp/ox-publish.el (org-publish-file): Add
`org-html-publish-to-html' as the default publishing function.
* testing/lisp/test-ox-publish.el (org-test-publish): Use
`org-plist-delete-all' to remove properties from the plist.
Reported-by: Christopher W. Ryan
See <https://list.orgmode.org/CAELBRWLgV-s6SGX=cevtN7iW8htwiLezR469T-cGMWE_6iX1+A@mail.gmail.com>
* lisp/ob-R.el (ob-session-async-R-indicator): Add constant
representing a prefix R to identity session.
(ob-session-async-org-babel-R-evaluate-session): New function to
evaluate R src block asynchrously.
(ob-session-async-R-value-callback): New function that calls back
the result of the asynchronous evaluation.
(org-babel-R-evaluate): Add `async' parameter and call
`ob-session-async-org-babel-R-evaluate-session' if `async'
parameter is present.
(org-babel-execute:R): Call `org-babel-comint-use-async' to check
if async is among `params' and add async parameter to
`org-babel-R-evaluate'.
* testing/lisp/test-ob-R.el: Add 7 more tests for async
evaluations, also taken from the `ob-session-async' package.
This is almost a carbon copy of Jack Kamm's `ob-session-async'.
The original source code can be found
https://github.com/jackkamm/ob-session-async.
Please refer to the following thread to trace back the discussion
on async evaluation in R:
https://list.orgmode.org/87eed9g9p6.fsf@gmail.com/
testing/lisp/test-org-protocol.el
(test-org-protocol/org-protocol-store-link)
(test-org-protocol/org-protocol-capture): Cases to check that "+" is
decoded to space in query parameters (new style of URIs) but preserved
in path components (old style of org-protocol links).
* lisp/ob-core.el (org-babel-disassemble-tables,
org-babel-gnuplot-process-vars): Use `proper-list-p' check instead of
`listp'.
(org-babel-disassemble-tables): Check list length before trying to
remove hline from a table assignment.
* testing/lisp/test-ob.el (test-ob/cons-cell-as-variable): Add the
test.
* lisp/ox-latex.el (org-latex-src-block): Prevent leak of percent sign
from caption to `format' first argument causing export failure due to
insufficient argument number. The fix covers only the case of verbatim
environment.
* testing/lisp/test-ox.el
(test-org-export/latex-src-block-verbatim-caption): New test for src
block LaTeX export with cases of various formatting of caption and
verbatim environment. Check that percent signs in caption and source
block body do not lead to errors.
Reported-by: Charest, Luc <charest.luc@hydroquebec.com>
<https://lists.gnu.org/archive/html/emacs-orgmode/2021-08/msg00017.html>
* lisp/org.el (org-add-log-setup): Always run `org-add-log-note' via
`post-command-hook'. Otherwise, there is no way to know if a note was
requested for `this-command'. Running `org-add-log-note' directly
would, for example, break `org-auto-repeat-maybe' as reported in [1].
* lisp/org-agenda.el (org-agenda-todo): Avoid reintroducing the bug
fixed in c670379adf.
* testing/lisp/test-org.el: Add test checking the reported bug.
[1] https://orgmode.org/list/CAOn=hbcaW1R6vtun-E2r4LS=j3dp=VjqmjGtzy8UC1SyPArKbA@mail.gmail.com
* lisp/org.el (org-insert-heading): Fix insertion of headings when
point is before any heading in the case of "respect content" insertion.
Kudos to Victor Stoichita. https://orgmode.org/list/87lf4594t3.fsf@svictor.net/
* lisp/org-footnote.el (org-footnote--allow-reference-p): Allow
inserting footnotes at the end of table cells.
* testing/lisp/test-org-footnote.el (test-org-footnote/new): Add test.
* lisp/oc.el (org-cite--allowed-p): Allow inserting a citation after
two or more spaces at the end of a table cell.
* testing/lisp/test-oc.el (test-org-cite/insert-capability): Add
tests.
* lisp/ox.el (org-export-raw-string): New function
(org-export-data):
(org-export-with-backend): React to raw objects.
* testing/lisp/test-ox.el (test-org-export/raw-string): New test.
A raw object is a pseudo-object (i.e., special object type that exists
only during export) with the property of being exported as-is, with no
processing from an export back-end.
It is particularly useful to add contents to, or pre-process objects
from, a parse tree.
* lisp/org-element.el (org-element-citation-key-re):
(org-element-citation-prefix-re): New variables.
(org-element--set-regexps): Set `org-element--object-regexp' so it
finds citations.
(org-element-all-objects): Add citation and citation-reference
objects.
(org-element-recursive-objects): Add citation object.
(org-element-object-restrictions): Add citation and citation-reference
to restrictions.
(org-element-secondary-value-alist): citation and citation references
can hold secondary strings.
(org-element-citation-parser):
(org-element-citation-interpreter):
(org-element-citation-reference-parser):
(org-element-citation-reference-interpreter): New functions.
(org-element--object-lex): Parse citations and citations references.
* testing/lisp/test-org-element.el (test-org-element/citation-parser):
(test-org-element/citation-reference-parser):
(test-org-element/citation-interpreter): New tests.
This patch adds support for [cite:@key], [cite:pre @key post]
[cite:global prefix; pre @key1 post; pre @key2 post; global suffix]
objects along with their [cite/style: ...] counterparts.
* lisp/org-capture.el (org-capture-fill-template): Changed to use
completing-read-multiple.
* lisp/org.el (org-set-tags-command): Changed to use
completing-read-multiple.
(org-change-tag-in-region): Changed to use a simple completion table.
* testing/lisp/test-org.el (test-org/set-tags-command): Fixed tests.
Change various places which use `completing-read' to read tags using a
custom completion function to instead use `completing-read-multiple'
with a completion table instead.
This makes tab completion play better with alternative completion
frameworks such as vertico, selectrum, etc.
`org-change-tag-in-region' only reads a single tag, so it is changed
to use a completion table with `completing-read'. This also makes it
play better with alternative completion frameworks.
Note that there is still one use for `org-tags-completion-function',
which is for completing tag matches. Completing tag matches is
different from completing lists of tags since the separators (+, -,
etc) have semantic meaning. This commit does not address that use
case.
Adds functionality to ob-comint.el to implement async session eval on
a per-language basis. Adds a reference implementation for ob-python.
* lisp/ob-comint.el (org-babel-comint-with-output): Remove comment.
(org-babel-comint-async-indicator, org-babel-comint-async-buffers,
org-babel-comint-async-file-callback,
org-babel-comint-async-chunk-callback,
org-babel-comint-async-dangling): Add buffer-local variables used for
async comint evaluation.
(org-babel-comint-use-async): Add function to determine whether block
should be evaluated asynchronously.
(org-babel-comint-async-filter): Add filter function to attach to
comint-output-filter-functions for babel async eval.
(org-babel-comint-async-register): Add function to setup buffer
variables and hooks for session eval.
(org-babel-comint-async-delete-dangling-and-eval): Add helper function
for async session eval.
* lisp/ob-python.el (org-babel-execute:python): Check for async header
argument.
(org-babel-python-evaluate): Check whether to use async evaluation.
(org-babel-python-async-indicator): Add constant for indicating the
start/end of async evaluations.
(org-babel-python-async-evaluate-session): Add function for Python
async eval.
*
testing/lisp/test-ob-python.el (test-ob-python/async-simple-session-output):
Unit test for Python async session eval.
(test-ob-python/async-named-output): Unit test that Python async eval
can replace named output.
(test-ob-python/async-output-drawer): Unit test that Python async eval
works with drawer results.
* lisp/org-element.el (org-element-drawer-parser): A single ":END:"
line should not be recognized as a drawer.
* testing/lisp/test-org-element.el (test-org-element/drawer-parser):
Add test.
Reported-by: Ihor Radchenko <yantar92@gmail.com>
<http://lists.gnu.org/r/emacs-orgmode/2021-05/msg00819.html>
* testing/lisp/test-org.el (test-org/with-electric-indent)
(test-org/without-electric-indent): Make sure
`org-adapt-indentation' is consistent with expected results.
* testing/lisp/test-org-element.el (test-org-element/cache-bugs): A
new test documenting a known bug:
1. Create initial file like:
P0
P1
| a | b |
<point>| c | d |
Note that second line of the table is not indented. Now,
org-element-at-point returns table-row.
2. Modify the file to test org-element-cache
P0
- item
P1
| a | b |
<point>| c | d |
Now, the first (indented) row of the table belongs to item. The
second row should be an individual table and org-element-at-point
returns table.
* testing/lisp/test-org-element.el (test-org-element/cache): Add
spaces to make the "abcd" table a single table. The old version uses
example org text with two tables and was passing because of another
bug in org-element-cache. Testing the old version with
org-element-use-cache set to nil would yield error, while it should
not.
* lisp/ol.el (org-link-make-regexps): Allow URLs with up to two
levels of nested brackets.
* lisp/org.el (org-link-plain-re): Update docstring.
* testing/lisp/test-ol.el: Add tests for the plain link regular
expression.
(org-link-plain-re): Update docstring. Now,
Now, URLs like [1] can be matched. The new regexp is based on [2].
The docstring of `org-link-plain-re' explicitly mentions that the
regexp must contain groups for the link type and the path.
[1] https://doi.org/10.1016/0160-791x(79)90023-x
[2] https://daringfireball.net/2010/07/improved_regex_for_matching_urls
* testing/lisp/test-org.el (test-org/with-electric-indent)
(test-org/without-electric-indent): Make sure
`org-adapt-indentation' is consistent with expected results.
* testing/lisp/test-org-element.el (test-org-element/cache): Add
spaces to make the "abcd" table a single table. The old version uses
example org text with two tables and was passing because of another
bug in org-element-cache. Testing the old version with
org-element-use-cache set to nil would yield error, while it should
not.
* lisp/ol.el (org-link-make-regexps): Allow URLs with up to two
levels of nested brackets.
* lisp/org.el (org-link-plain-re): Update docstring.
* testing/lisp/test-ol.el: Add tests for the plain link regular
expression.
(org-link-plain-re): Update docstring. Now,
Now, URLs like [1] can be matched. The new regexp is based on [2].
The docstring of `org-link-plain-re' explicitly mentions that the
regexp must contain groups for the link type and the path.
[1] https://doi.org/10.1016/0160-791x(79)90023-x
[2] https://daringfireball.net/2010/07/improved_regex_for_matching_urls
* testing/lisp/test-ob-R.el (ert-deftest test-ob-r/NA-blank): new test
for :results value. Make sure that NA values in R data.frames are
empty string instead of nil previously
see https://orgmode.org/list/87pn1dufm2.fsf@gmail.com/
* testing/lisp/test-ob-R.el (test-ob-r/output-with-<>): new test for output
angle brackets
(test-ob-R/output-nonprinted): New test for output results that aren't
explicitly printed. (Here all the lines are expected to be printed
not just the last one)
Patch suggested by Jack Kamm:
https://orgmode.org/list/87h7slgbi5.fsf@gmail.com/
* testing/org-test.el (org-test-at-time): Use correct number of
arguments in 'decode-time cl-letf binding. `decode-time' accepts up to
3 arguments on master.
The wrong-numbre-of-arguments error is raised on Emacs master
configured with native-comp support when running make test on Org mode
master. Native-comp modifies function calls with optional arguments
in the way that omitted arguments are still provided as `nil'. For
example, `decode-time' called as (decode-time time) in lisp source may
be compiled into (decode-time time nil nil) call by native-compiler.
If redefined `decode-time' does not accept 3 arguments, it result in
error.
See Emacs bug#48133.
* lisp/ob-tangle.el (org-babel-tangle-collect-blocks): Group
collected blocks by tangled file name.
(org-babel-tangle): Avoid quadratic behavior in number of blocks and
set modes before writing to file.
* testing/lisp/test-ob-tangle.el (ob-tangle/block-order): Update test.
* testing/lisp/test-org-protocol.el
(test-org-protocol/org-protocol-store-link-file,
test-org-protocol/org-protocol-capture-file): Add tests to document
that existing calls to `org-protocol-sanitize-uri' could make passed
URLs invalid by changing number of slashes after scheme.
Till a fix of the problem the new tests are marked as expected failures.
Unless a relatively recent commit 5748615c48, I would believe that
`org-protocol-sanitize-uri' was added by mistake to the initial
implementation. Capture URLs are anyway escaped with percent encoding.
Ihor Radchenko
Bruno BARBIER
Max Nikulin
Sébastien Miquel
Hraban Luyat
Hugo Heagren
TEC
Stefan Kangas
Allen Li
Ryan Scott
Rudolf Adamkovič
Tyler Grinn
Andrew Arensburger
Nick Dokos
Nicolas Goaziou
Kyle Meyer
Sacha Chua
Marco Wahl
Yasushi SHOJI
Jeremie Juste
Bastien
Pedro Bruel
Jack Kamm
Kévin Le Gouguec
Jeremie Juste