* lisp/ob-lob.el (org-babel-default-lob-header-args): Merge value with
`org-babel-default-header-args' since this variable is meant to
replace the latter.
(org-babel-lob-ingest): Make sure `org-babel-default-lob-header-args' is
used instead of `org-babel-default-header-args'.
(org-babel-lob--src-info): New function.
(org-babel-lob-get-info): Use new function. Make return value
a replacement for `org-babel-get-src-block-info'.
(org-babel-lob-execute): Use `org-babel-execute-src-block' instead of
duplicating functionalities.
* lisp/ob-exp.el (org-babel-exp-process-buffer): Apply changes to
`org-babel-lob-get-info' return value.
* testing/examples/ob-header-arg-defaults.org:
* testing/lisp/test-ob-header-arg-defaults.el (test-ob-header-arg-defaults/tree/accumulate/call):
(test-ob-header-arg-defaults/tree/complex/call):
(test-ob-header-arg-defaults/tree/overwrite/call):
* testing/lisp/test-ob-lob.el (test-ob-lob/caching-call-line):
(test-ob-lob/named-caching-call-line): Update tests.
The purpose of this commit is to make Babel calls more
predictable (e.g., wrt property inheritance) and to remove code
duplication. Also, Babel calls results are no longer treated as Emacs
Lisp values.
* lisp/ob-core.el (org-babel-get-inline-src-block-matches): Remove
function.
(org-babel-when-in-src-block):
(org-babel-insert-result): Do not use removed function.
(org-babel-remove-inline-result): Add an optional argument for a tiny
speed-up.
* testing/examples/babel.org:
* testing/lisp/test-ob.el (test-ob/inline-src_blk-default-results-replace-line-1):
Remove needless tests.
* lisp/ob-core.el (org-babel-get-src-block-info): Rewrite function.
Change signature.
(org-babel-parse-src-block-match):
(org-babel-parse-inline-src-block-match): Remove functions.
(org-babel-execute-src-block): Remove useless function call.
* lisp/ob-exp.el (org-babel-exp-process-buffer): Make use of signature
change.
(org-babel-exp-results): Use new return value from
`org-babel-get-src-block-info'. Tiny refactoring.
* testing/lisp/test-ob.el (test-ob/nested-code-block): Fix test.
* contrib/lisp/org-eldoc.el (org-eldoc-get-src-lang): Use parser instead
of removed function.
* testing/examples/babel.org: Fix test environment.
* testing/examples/ob-C-test.org:
* testing/examples/ob-fortran-test.org:
* testing/examples/ob-maxima-test.org:
* testing/lisp/test-ob-python.el (test-ob-python/colnames-yes-header-argument-again):
(test-ob-python/colnames-no-header-argument-again):
* testing/lisp/test-ob.el (test-ob/do-not-resolve-to-partial-names-data):
Use NAME instead of TBLNAME.
TBLNAME is deprecated syntax since Org 8.
* lisp/org-macro.el (org-macro--collect-macros): cd to the directory
containing the SETUPFILE before recursing so that relative pathnames
in the SETUPFILE are expanded properly.
* lisp/org.el (org--setup-collect-keywords): cd to the directory
containing the SETUPFILE before recursing so that relative pathnames
in the SETUPFILE are expanded properly.
* lisp/ox.el (org-export--get-inbuffer-options,
org-export--list-bound-variables): cd to the directory containing the
SETUPFILE before recursing so that relative pathnames in the SETUPFILE
are expanded properly.
If /path/to/foo.org contains:
#+SETUPFILE: settings/beamer.org
and /path/to/settings/beamer.org contains:
#+SETUPFILE: common.org
then we want to read /path/to/settings/common.org, not
/path/to/common.org.
TINYCHANGE
* test/examples/babel.org: Miscellaneous fixes for new inline src
block schema. Return a scalar to avoid unwanted error. Return a raw
result from `src_emacs-lisp' to make checking results cleaner than
dealing with `results' macro.
* testing/lisp/test-ob-exp.el: Wrap some expected results in
`{{{results(' and ')}}}' and drop `=%s=' formatting of others.
* testing/lisp/test-ob-lob.el: Wrap some expected results in
`{{{results(' and ')}}}'.
* testing/lisp/test-ob.el: Wrap some expected results in `{{{results('
and ')}}}'.
* testing/lisp/test-ob.el
(test-org-babel/org-babel-get-inline-src-block-matches,
test-org-babel/inline-src_blk-results-silent): Tests of inline src
block matches (and `org-ctrl-ctrl-c') conform to the `:begin' and
`:end' properties of `org-element-context'.
* testing/lisp/test-ob.el
(test-org-babel/inline-src_blk-default-results-replace-line-1,
test-org-babel/inline-src_blk-default-results-replace-line-2):
Inline results are self replacing.
* testing/examples/babel.org: Change spaces to dashes in #+name
lines.
* testing/lisp/test-ob-exp.el (org-test-with-expanded-babel-code):
(ob-exp/evaluate-all-executables-in-order):
(ob-exp/exports-inline-code):
(ob-exp/exports-inline):
(ob-exp/exports-inline-code-double-eval):
(ob-exp/exports-inline-code-eval-code-once):
(ob-exp/exports-inline-code-double-eval-exports-both):
(ob-exp/use-case-of-reading-entry-properties):
(ob-exp/export-from-a-temp-buffer):
(ob-export/export-with-results-before-block):
(ob-export/export-under-commented-headline):
* testing/lisp/test-ob-lob.el (test-ob-lob/export-lob-lines):
* testing/lisp/test-ob.el (test-org-babel/inline-src_blk-default-results-replace-line-1):
(test-org-babel/inline-src_blk-default-results-replace-line-2):
(test-org-babel/inline-src_blk-manual-results-replace):
(test-org-babel/inline-src_blk-results-scalar):
(test-org-babel/inline-src_blk-results-verbatim):
(test-org-babel/inline-src_blk-preceded-punct-preceded-by-point):
* testing/lisp/test-ox.el (test-org-export/export-scope):
Bind ‘org-babel-inline-result-wrap’ and/or ‘org-export-babel-evaluate’
so tests work when users have customized these variables.
* testing/lisp/test-ob-exp.el (ob-export/export-with-results-before-block):
Add ‘org-trim’ where an extra newline was creeping in.
* testing/lisp/test-ob-lob.el (test-ob-lob/call-with-header-arguments):
Neutralize org-babel-insert-result, which was stomping on the buffer
contents and disrupting the test
* testing/lisp/test-org-element.el (test-org-element/block-switches):
Replace (should (and ...)) with multiple (should ...). This gives
more precise indications of what is wrong when a test fails.
(test-org-element/link-parser): Require org-docview.
* testing/lisp/test-org-timer.el (test-org-timer/other-timer-error):
Add the error type for ‘should-error’.
* testing/lisp/test-ox.el (test-org-export/set-title):
(test-org-export/handle-options):
(test-org-export/with-timestamps):
(test-org-export/comment-tree):
(test-org-export/handle-inlinetasks): Let
‘org-export-filter-body-functions’ and
‘org-export-filter-final-output-functions’ to nil where an empty
string is the expected result. ‘org-export-filter-apply-functions’
treats an empty string as special, and changes it to nil. This
creates test failures when the user has customized these variables.
* testing/org-test.el (org-test-with-temp-text): Let ‘org-mode-hook’
to nil.
(org-test-table-target-expect): Require ert since this function calls
some of its should* functions.
* lisp/ox.el (org-export--inclusion-absolute-lines): Fix comment.
(org-export--prepare-file-contents): Do not look for property drawers
after a drawer, since this is impossible.
* testing/examples/include.org: Fix test data.
* lisp/ob-exp.el (org-babel-exp-inline-code-template): New
customizable variable to export inline source code (similar to
`org-babel-exp-code-template').
(org-babel-exp-code): New `type' argument to differentiate between
inline and standard code blocks.
* lisp/ob-core.el (org-babel-inline-src-block-regexp): Allow empty set
of switches and header arguments as in "src_sh[]{echo foo;}". Also
permit spaces before them.
* testint/lisp/test-org-element.el
(test-org-element/inline-src-block-parser): Test extended syntax for
inline source code.
* testing/lisp/test-ob-exp.el (ob-exp/exports-inline-code): New
function for testing inline source code handling. Also add three new
failing tests exhibiting unexpected results with ":results code"
switches.
* testing/lisp/test-ob.el
(test-org-babel/org-babel-get-inline-src-block-matches): Test for
inline source blocks with empty header arguments.
* testing/examples/babel.org: New sections for testing (i) exported
inline source code (used by `ob-exp/exports-inline-code'); (ii)
parsing inline source blocks with empty header arguments (used by
`test-org-babel/org-babel-get-inline-src-block-matches').
Until now pieces of inline source code were handled as standard code
blocks during export. These changes enable them to be exported.
* ob-C.el: handling of non-homogeneous tables,
support for table header,
support for iterating over table cells.
(org-babel-expand-body:C++): uncomment
(org-babel-C-execute): cosmetic changes
(org-babel-C-expand-C): add support for table columns names,
add support for table dimensions,
add standard includes
(org-babel-C-val-to-C-type): rewrite to support non-homogeneous
tables cells
(org-babel-C-table-sizes-to-C): new function to gain access
to the table dimensions
(org-babel-C-utility-header-to-C):
(org-babel-C-header-to-C): new functions to generate
support for table header.
* ob-C-test.org: added D sibling tests similar to C++,
added non-homogeneous table example for C++ and D
* test-ob-C.el: new tests for D and non-homogeneous tables
(ob-C/simple-program):
(ob-C/simple-program):
(ob-D/simple-program):
(ob-C/integer-var):
(ob-D/integer-var):
(ob-C/two-integer-var):
(ob-D/two-integer-var):
(ob-C/string-var):
(ob-D/string-var):
(ob-C/preprocessor):
(ob-C/table):
(ob-D/table):
(ob-C/list-var):
(ob-D/list-var):
(ob-C/vector-var):
(ob-D/vector-var):
(ob-C/list-list-var):
(ob-D/list-list-var):
(ob-C/inhomogeneous_table):
(ob-D/inhomogeneous_table): add compiler availability check
(ob-D/simple-program):
(ob-D/integer-var):
(ob-D/two-integer-var):
(ob-D/string-var):
(ob-D/table):
(ob-D/list-var):
(ob-D/vector-var):
(ob-D/list-list-var):
(ob-D/inhomogeneous_table): add D unit tests
(ob-C/inhomogeneous_table):
(ob-D/inhomogeneous_table): add non-homogeneous table
unit tests
* lisp/ox.el (org-export-expand-include-keyword): Change parsing so
that arbitrary blocks around the included content can be used.
Content is not code-escaped unless it is a literal block, this
applies to "src" and "example".
* doc/org.texi (Include files): Document the additional markup.
* testing/lisp/test-ox.el (test-org-export/expand-include): Add test
for an #+INCLUDE with "html" and "center" markup.
* testing/examples/include.html: New file, used for testing
"#+INCLUDE html".
* lisp/ob-core.el (org-babel-generate-file-param): New function.
(org-babel-get-src-block-info): Use it.
(org-babel-merge-params): Handle :file-ext.
(org-babel-graphical-output-file): error if no :file or :file-ext.
* testing/lisp/test-ob.el (test-org-babel/file-ext-and-output-dir):
New test.
* doc/org.texi (Specific header arguments): Add doc for :file-ext and
:output-dir header args.
* lisp/ob-R.el (org-babel-expand-body:R): Don’t calculate
graphics-file.
(org-babel-execute:R): Only look for a graphics-file if needed.
* lisp/ob-shell.el: added support to serialize vars as arrays or associative arrays as appropriate if it is using bash.
* testing/examples/ob-shell-test.org: a file containing a few code blocks both illustrating the use of arrays as well as serving as test for the new export functionality.
* testing/lisp/test-ob-shell.el: added a few unit tests that verify that this new logic only triggers for bash and no other shell at this time.
When variables are defined in a 'sh' code block, they are exported as strings. when the variable itself is an array or a table, then we simply get a shell variable that contains the list of all values in a non-structured form.
When calling the code block with bash, however, it will now export the list as an array, the table as an associative array. A scalar is exported the same way as before.
Signed-off-by: Pascal Fleury <fleury@google.com>
* lisp/org.el (org-open-at-point): Rewrite function using Element
parser.
(org-link-types): Add "help" type.
* testing/lisp/test-org-open-at-point.el: Remove file. Two tests are
not supported anymore (namely bracket-link-before and
plain-link-before) and the other tests are wrong (mixing id and
custom-id links).
* testing/examples/open-at-point.org: Remove file.
* testing/lisp/test-org.el (test-org/custom-id): Add test.
Unlike to the previous implementation, this one will only open links
under point or just before point, not links on the same line but
before point.
* testing/examples/babel.org(use case of reading entry properties):
Adapt to use the new introduced #+NAME for src block calls.
* testing/lisp/test-ob-exp.el(ob-exp/use-case-of-reading-entry-properties):
Adapt to use the new introduced #+NAME for src block calls.
* testing/examples/babel.org: Quote :shebang header argument.
2a73e06 introduced a new behaviour for org-babel-read and values
starting with "#" must now be quoted.
* lisp/ob-fortran.el: add a branch which handles nested lists
* testing/examples/ob-fortran-test.org: add a test for matrix input
* testing/lisp/test-ob-fortran.el: add a test for matrix input
* testing/examples/open-at-point.org: new file.
* testing/lisp/test-org-open-at-point.el: new file.
This tests only the function when inside or before bracket links
and plain links.
* contrib/lisp/org-export.el (org-export-as): Expand include keywords
before macros. This allows to specify macro templates in the
included file.
* testing/examples/macro-templates.org: New file for testing purposes.
* testing/lisp/test-org-export.el: Add test.
The current Emacs trunk bumped to version >24.2.50 because a new
release Emacs 24.2 has been decided. `cl-map' is not an alias for
`map' in Emacs < 24.2.50 -- so take this into account in some tests.
I started from the 78ec8e commit then cherry-picked and squashed
commits that have been done in master since then, except the bad
commits that overwrote the tree (in master) with the tree in maint.
This commit also bumps the version number to 7.8.06.
The only "fix" that was made between 78ec8e and the previous commit
is e0072f which has been reported to break stuff.
This fixes a wrong merge that should not have happened:
commit 7e903a merges the master branch into the maint branch,
while we really want to keep the maint branch a bugfix-only
branch.
This commit reverts back the maint branch to its state before
merging the master branch. From there, we will fix remaining
problems with the maint branch (e.g. copyright issues) then
release this maint branch as Org-mode 7.8.05.
* contrib/lisp/org-export.el (org-export-expand-include-keyword): Use
another optional argument to specify the current working directory.
(org-export-as): Apply changes.
* testing/contrib/lisp/test-org-export.el: Add tests.
* testing/examples/include.org: New test file.
* testing/examples/include2.org: New test file.
* lisp/ob-exp.el (org-babel-exp-call-line-template): Control export of
additional call line information.
(org-babel-exp-non-block-elements): Fancier call line export.
* testing/examples/babel.org (an): Example data to test new call line
export.
* testing/lisp/test-ob-exp.el (ob-exp/export-call-line-information):
Test new call line export.
* lisp/ob-exp.el (org-babel-exp-results): Alter a copy of info.
* testing/examples/babel.org (an): Example data for test behavior.
* testing/lisp/test-ob-exp.el (ob-exp/noweb-no-export-and-exports-both):
Confirm proper behavior.
* testing/examples/babel.org:
* testing/examples/table.org:
* testing/lisp/test-ob.el:
* testing/lisp/test-org-table.el:
Tests that used to write to a test-example file (ie testing/babel.org)
have been modified to write to temp files instead.
This avoids leaving open and /modified/ tests in Emacs when tests are
run by `org-test-run-all-tests'.
This results in the following behavior.
#+property: var foo=1
#+property: var+ bar=2
#+begin_src emacs-lisp
(+ foo bar)
#+end_src
#+results:
: 3
#+begin_src emacs-lisp
(org-entry-get (point) "var" t)
#+end_src
#+results:
: foo=1 bar=2
* overwriting a file-wide property
:PROPERTIES:
:var: foo=7
:END:
#+begin_src emacs-lisp
foo
#+end_src
#+results:
: 7
#+begin_src emacs-lisp
(org-entry-get (point) "var" t)
#+end_src
#+results:
: foo=7
* appending to a file-wide property
:PROPERTIES:
:var+: baz=3
:END:
#+begin_src emacs-lisp
(+ foo bar baz)
#+end_src
#+results:
: 6
#+begin_src emacs-lisp
(org-entry-get (point) "var" t)
#+end_src
#+results:
: foo=1 bar=2 baz=3
* lisp/org.el (org-update-property-plist): Updates a given property
list with a property name and a property value.
(org-set-regexps-and-options): Use org-update-property-plist.
(org-entry-get): Use org-update-property-plist.
* testing/examples/property-inheritance.org: Example file for testing
appending property behavior.
* testing/lisp/test-property-inheritance.el: Tests of appending
property behavior.
* lisp/ob.el (org-babel-balanced-split): Allow splitting on single
characters as well as groups of two characters.
(org-babel-parse-multiple-vars): Split variables on single spaces.
Nick Dokos <nicholas.dokos@hp.com> writes:
> Eric Schulte <schulte.eric@gmail.com> wrote:
>
>> The attached updated patch fixes a bug in the original.
>>
>
> Minor problem in applying:
>
> ,----
> | $ git apply ~/Mail/inbox/724
> | /home/nick/Mail/inbox/724:671: trailing whitespace.
> | #+name:
> | /home/nick/Mail/inbox/724:599: new blank line at EOF.
> | +
> | warning: 2 lines add whitespace errors.
> `----
The attached version fixes these issues, Thanks -- Eric
>From 0e43d59ee8d46a63f86780a502de726271bc39de Mon Sep 17 00:00:00 2001
From: Eric Schulte <schulte.eric@gmail.com>
Date: Fri, 28 Oct 2011 10:44:21 -0600
Subject: [PATCH] removing code block, results and call-line synonyms -- BREAKING CHANGE
Following a round of on-list discussion many code block synonyms have
been removed, moving forward the following syntax is valid.
- call lines are specified with #+call:
- code blocks are named with #+name:
- results are named with #+name:, however results generated by a code
block may still be labeled with #+results:, and tables named with
#+tblname: will be considered to be named results
The following function may be used to update an existing Org-mode
buffer to the new syntax.
(defun update-org-buffer ()
"Update an Org-mode buffer to the new data, code block and call line syntax."
(interactive)
(save-excursion
(flet ((to-re (lst) (concat "^[ \t]*#\\+" (regexp-opt lst t)
"\\(\\[\\([[:alnum:]]+\\)\\]\\)?\\:[ \t]*"))
(update (re new)
(goto-char (point-min))
(while (re-search-forward re nil t)
(replace-match new nil nil nil 1))))
(let ((old-re (to-re '("RESULTS" "DATA" "SRCNAME" "SOURCE")))
(lob-re (to-re '("LOB")))
(case-fold-search t))
(update old-re "name")
(update lob-re "call")))))
Note: If an old version of Org-mode (e.g., the one shipped with Emacs)
is installed on your system many of the important variables will
be pre-defined with a defvar and *will not* have their values
automatically updated, these include the following.
- org-babel-data-names
- org-babel-result-regexp
- org-babel-src-block-regexp
- org-babel-src-name-regexp
- org-babel-src-name-w-name-regexp
It may be necessary to either remove the source code of older
versions of Org-mode, or to explicitly evaluate the ob.el file.
* lisp/ob-exp.el (org-exp-res/src-name-cleanup): Updated
Documentation.
* lisp/ob-lob.el (org-babel-block-lob-one-liner-regexp): Updated
regular expression.
(org-babel-inline-lob-one-liner-regexp): Updated regular expression.
* lisp/ob-ref.el (org-babel-ref-resolve): Notice when something that
looks like a data results may actually be a code block.
* lisp/ob-table.el: Updated documentation.
* lisp/ob.el (org-babel-src-name-regexp): Simplified regexp.
(org-babel-get-src-block-info): Updated match strings.
(org-babel-data-names): Simplified acceptable names.
(org-babel-find-named-block): Indentation.
(org-babel-find-named-result): Updated to not return a code block as
a result.
* lisp/org.el (org-fontify-meta-lines-and-blocks-1): Removing
references to old syntactic elements.
(org-additional-option-like-keywords): Removing references to old
syntactic elements.
* contrib/babel/library-of-babel.org: Updated to make use of the new
syntax.
* testing/examples/babel-dangerous.org: Updated to make use of the new
syntax.
* testing/examples/babel.org: Updated to make use of the new syntax.
* testing/examples/ob-awk-test.org: Updated to make use of the new
syntax.
* testing/examples/ob-fortran-test.org: Updated to make use of the new
syntax.
* testing/lisp/test-ob.el: Removed two bad tests which tested the
literal values of old regular expressions rather than their
behavior.
Please consider a patch to construct a table from the output of maxima
code block.
>From a0305117f4e793c93d7d10bc7aab04f96bd62e9c Mon Sep 17 00:00:00 2001
From: Litvinov Sergey <slitvinov@gmail.com>
Date: Sat, 1 Oct 2011 22:29:18 +0200
Subject: [PATCH] [ob-maxima] Construct a table from the output of the code block. Add
ert tests.
The first patch maps cpp language code to c++-mode. The second patch
adds tests for ob-C.
>From fba6eef6944766e675e4abe1d11d347b9a728031 Mon Sep 17 00:00:00 2001
From: Sergey Litvinov <slitvinov@gmail.com>
Date: Wed, 3 Aug 2011 22:03:19 +0200
Subject: [PATCH 2/2] Add tests for ob-C.el
* testing/examples/babel.org (an): Test the combination of code block
results wrapper and type.
* testing/lisp/test-ob.el (test-org-babel/combining-scalar-and-raw-result-types):
Test the combination of code block results wrapper and type.
* testing/examples/org-exp.org: Example file for export tests.
* testing/lisp/test-org-exp.el (test-org-exp/stripping-commas): List
file for export tests.
* lisp/ob-exp.el (org-babel-in-example-or-verbatim): Also check for in
verbatim emphasis.
(org-babel-exp-lob-one-liners): Cleaner checking for escaped call
lines.
* testing/examples/babel.org: Example data for new test.
* testing/lisp/test-ob-tangle.el
(ob-tangle/no-excessive-id-insertion-on-tangle): Safer to narrow,
and less work.
(ob-tangle/continued-code-blocks-w-noweb-ref): Testing new
:noweb-ref header argument.
Thanks to Charles C. Berry for insisting on this issues existence
This change is now secured with a unit test
* lisp/ob.el (org-babel-parse-header-arguments): Stripping trailing
spaces off of header arguments (even the first one).
* lisp/ob.el (org-babel-sha1-hash): now handles more complex types in
params
* testing/examples/babel.org: whitespace
* testing/lisp/test-ob.el (test-org-babel/sha1-hash): new test for
babel hashing
* lisp/ob-lob.el (org-babel-lob-execute): now expanding variable
references before execution
* lisp/ob.el (org-babel-merge-params): better indentation, and finally
sorted out the proper replacement of conflicting variable
definitions
includes a simple export test
* lisp/ob-exp.el (org-babel-exp-in-export-file): wrapper for
collecting information from within the original export file
(org-babel-exp-src-blocks): simplified through use of the above
macro
(org-babel-exp-code): simplified through the use of new functions
for parsing header arguments
(org-babel-exp-results): simpler high-level organization, also this
is now where the expansion of variable references takes place during
export
* lisp/ob.el (org-babel-expand-variables): broke variable replacement
in a parameter list into it's own function
(org-babel-get-src-block-info): now using the above function
for example, from the test of this functionality
* multi-line header arguments
:PROPERTIES:
:ID: b77c8857-6c76-4ea9-8a61-ddc2648d96c4
:END:
(map 'list #'list numbers letters)
| 1 | a |
| 2 | b |
| 3 | c |
| 4 | d |
| 5 | e |
| 6 | f |
| 7 | g |
* lisp/ob.el (org-babel-multi-line-header-regexp): new variable for
matching header lines preceding code blocks
(org-babel-src-name-w-name-regexp): now includes possible header
lines between source name and code block
(org-babel-get-src-block-info): now also collecting header arguments
from preceding header lines
(org-babel-src-block-names): updated match-string to reflect new
value of org-babel-src-name-w-name-regexp
(org-babel-merge-params): fixed error in variable string regexp
Nicolas Goaziou
Richard Hansen
Bjarte Johansen
Thierry Banel
Charles Berry
Aaron Ecay
Rasmus
Nicolas Berthier
Achim Gratz
Eric Schulte
Pascal Fleury
Nicolas Goaziou
Michael Brand
Rüdiger Sonderfeld
Litvinov Sergey
Samuel Loury
Bastien Guerry
Eric Schulte
Martyn Jago
Sebastien Vauban