703e6152b4
DEFERRED Rely on defaults (one of which is missing)
2009-07-22 12:00:47 -06:00
30259844b9
DONE Both supplied
2009-07-21 16:46:53 -06:00
fe0532e509
DONE One supplied, one default
...
We are now skipping results lines when resolving references which
specify arguments, as the arguments would change the value of the
source-code block.
2009-07-21 16:46:26 -06:00
2bfa420c6a
DONE empty parens () not recognised as lob call
2009-07-21 16:27:48 -06:00
68bd53cf7c
Merge branch 'master' into investigation
...
Conflicts:
org-babel.org
2009-07-21 16:00:42 -06:00
5d1ee80683
Adding tests of default args using lob evaulation.
2009-07-21 15:48:45 -04:00
ad7b17c393
Moving nested evaluation from Tasks to Bugs
2009-07-21 15:48:14 -04:00
53c08df3ae
so it looks like regardless of the syntax used we're not overriding
...
the default argument values.
2009-07-21 12:22:59 -06:00
a58dd8e3af
bringing in o-b.org from evaluation branch
2009-07-21 12:15:38 -06:00
d4b7914f7c
DONE gnuplot [7/7]
2009-07-20 14:04:37 -06:00
85dc35656d
DONE gnuplot sessions
2009-07-20 13:33:53 -06:00
ed42f95106
DEFERRED header argument specifying 3D data
2009-07-20 13:20:06 -06:00
104f05ef5e
DONE helpers from org-plot.el
2009-07-20 13:10:28 -06:00
809462e3ee
Merge branch 'master' into gnuplot
...
Conflicts:
lisp/langs/org-babel-gnuplot.el
With respect to the conflict, I will try removing the lines you
mentioned before my next commit.
2009-07-20 13:07:29 -06:00
c81479b161
added a :file header argument to gnuplot
2009-07-20 13:04:40 -06:00
4589aacb51
A couple of fixes to sketched-out parsing algorithm.
2009-07-20 01:33:40 -04:00
5a5a4253c6
Some notes on possibly adding a recursive evaluation mechanism.
...
Currently we can't have nested function calls, and I think that a general fix for that would require going the standard route of constructing a parse tree and evaluating it recursively.
2009-07-20 01:24:33 -04:00
307c7667db
still working on gnuplot variable support
2009-07-19 16:40:28 -06:00
9bdddde454
gnuplot: switching to using user defined variables for handling variables
...
This will require gnuplot version 4.2 or up
2009-07-19 15:46:05 -06:00
01c6bd2b33
pulled the gnuplot variable processing out into it's own function
2009-07-19 15:30:40 -06:00
006d6d1193
deferring more sophisticated gnuplot prebuilt helpers
2009-07-19 14:53:12 -06:00
162b522728
Fixing srcname function call regexps.
...
But still some improvement of this to be done (see bugs section).
2009-07-19 14:29:10 -04:00
bd1ff11b4e
Merge commit 'origin/master'
2009-07-19 13:58:03 -04:00
aa1747b065
Quite a few revisions / additions to the tasks and bugs lists.
2009-07-19 13:56:38 -04:00
b57617bc53
Merge branch 'master' into gnuplot
2009-07-19 11:37:58 -06:00
1df8d69c7c
some minor additional discussion in o-b.org
2009-07-19 11:17:32 -06:00
585f69d1f7
Merge branch 'master' into gnuplot
2009-07-19 11:12:09 -06:00
c9752352ea
added task: "TODO gnuplot support for column/row names"
...
Adding support for column/row names (as currently being implemented
for R) on a language by language basis is definitely the right way to
handle this hline/header issue. I am going to try to do the same for
gnuplot.
2009-07-19 11:11:55 -06:00
91301b8c29
Merge branch 'master' into gnuplot
2009-07-19 11:02:17 -06:00
7aafbb0cfc
Updating / adding discussion to o-b.org.
2009-07-19 01:45:38 -04:00
daf3e210da
Updating o-b.org: two new R colname tests and graphics output discussion.
2009-07-19 01:08:45 -04:00
4ff540bfd7
started bringing in options from org-plot
2009-07-18 18:05:11 -06:00
2aa721a7dc
replacing gnuplot task documentation lost in a merge
2009-07-18 17:57:23 -06:00
6070566113
replacing gnuplot task documentation lost in a merge
2009-07-18 17:57:13 -06:00
1c5ac55881
Updating o-b.org, including a couple of new bugs.
2009-07-18 19:11:14 -04:00
ef6668df61
Merging examplizing-output into master
2009-07-18 18:10:14 -04:00
4b7eef1a31
Merge commit 'origin/master'
2009-07-18 16:53:11 -04:00
efd48d4405
new bug: avoid stripping whitespace when :results output
2009-07-18 16:53:08 -04:00
fcfe110fef
correctly handling exclusive :exports params
2009-07-18 14:24:47 -06:00
09675f518e
Cherry-picking org-babel.org from examplizing-output.
2009-07-18 15:46:52 -04:00
20e06fe86f
Updating org-babel.org.
2009-07-18 15:40:15 -04:00
802c5c5292
Updating org-babel.org.
2009-07-18 15:39:47 -04:00
61daf1e762
promoted to TODO: use example block for large amounts of stdout output?
2009-07-18 13:14:44 -06:00
f0adc09a42
added discussion of: PROPOSED optional timestamp for output
2009-07-18 13:14:43 -06:00
cfb9092ede
Revising bugs and tasks in org-babel.org
2009-07-18 14:02:22 -04:00
24927c2a45
Minor changes to org-babel.org
2009-07-18 13:04:00 -04:00
ccc461ef54
Merging master into results.
2009-07-18 13:01:16 -04:00
6cd9cb6924
Updating org-babel.org
2009-07-18 01:48:53 -04:00
58a427f70d
agreeing with new tasks
2009-07-17 16:58:57 -06:00
b15beb63d2
Merging master into results to pick up new TODO.
2009-07-17 14:42:31 -04:00
017d46e50f
Reinstated force-results-to-vector: passing all tests in table.
2009-07-17 14:37:43 -04:00
c05ac759ac
Trivial: removing whitespace in org-babel.org; passing most tests now.
2009-07-17 14:00:32 -04:00
1f9f1564ec
added task: take default values for header args from properties
2009-07-17 11:27:41 -06:00
72ccd88c97
Merging master into results.
...
THis brings in the bugfix from 4f15280631
2009-07-17 09:54:11 -04:00
1fa18830ab
gnuplot is able to generate graphs, but needs much more work
2009-07-16 22:20:58 -06:00
64a5c0e379
Merging master into results: required manual conflict resolution.
...
results had upgraded to using org-babel-merge-params (although
apparently not yet in org-babel-parse-inline-src-block-match).
2009-07-16 23:22:25 -04:00
cdc46b8b74
added ability for languages to change their default header argument values
2009-07-16 18:52:31 -06:00
37d5edbad9
fleshing out the gnuplot task
2009-07-16 18:35:22 -06:00
5527d419a1
added support for ditaa source blocks
2009-07-16 18:23:19 -06:00
29d910c5e2
"file" results now correctly insert a file link
2009-07-16 18:17:51 -06:00
b932d2ed76
ditaa evaluation is working (but still requires some more peripheral support)
2009-07-16 18:12:11 -06:00
3382a0ea8b
New bug: emacs-lisp fails when reference is a literal number.
2009-07-16 16:24:50 -04:00
e49db4f3e6
New proposed tasks: make tangled files read-only, and fold source blocks on #+srcname line
2009-07-16 12:16:16 -04:00
690ed664c6
Merging master into results.
...
In order to get new tangle load-file function. Had to resolve org-babel.org conflict manually and didn't know the 'proper' way to do so, so there may be weirdness in that file.
2009-07-16 01:28:15 -04:00
d37d148d3f
DONE singe-function tangling and loading elisp from literate org-mode file [3/3]
2009-07-14 21:55:50 -07:00
77c7fc81cc
flesh out org-babel-load-file task statement
2009-07-14 21:55:11 -07:00
cdd73500d6
DONE ensure that org-babel-tangle returns the path to the tangled file(s)
2009-07-14 21:52:27 -07:00
07c919cb31
fleshing out actual loading of tangled files
2009-07-14 21:52:10 -07:00
92f979cc88
fleshing out documentation for automatic tangling and loading of elisp
2009-07-14 21:52:06 -07:00
8694253c9f
getting started on automatic loading of elisp from org-mode files
2009-07-14 20:21:08 -07:00
213b045359
Updating main org file and tidying library-of-babel.org.
2009-07-11 23:59:51 -04:00
42fe3144b7
Some more bugs / TODOs, and some unimportant changes.
2009-07-10 21:13:21 -04:00
ad6eaadd39
Unimportant changes to org-babel.org (need for these to be merged into
...
master branch)
2009-07-05 19:24:29 -04:00
adcfa3c54b
Some todos/bug notes in org-babel.org
2009-06-30 20:46:51 -04:00
b8f1d920f9
added "Getting Started" to org-babel.org preface
2009-06-26 11:45:05 -07:00
f8b331dd1c
Blanking results fields in the Tests table
2009-06-26 10:38:14 -04:00
6c34513c51
Added a 'Getting Started' section to org-babel.org with the necessary (require ...) line
2009-06-26 10:15:42 -04:00
4609674897
expanded/improved preface in org-babel.org
2009-06-25 01:14:51 -07:00
e6a9f79eed
added description of document to org-babel.org preface
2009-06-25 00:41:23 -07:00
c6d7014fa8
adding introductory phrase
2009-06-24 22:46:01 -07:00
d370fadcf2
added a "features" portion to the intro with info on sessions and results
2009-06-15 13:37:42 -07:00
c678059deb
passing all tests
2009-06-15 12:47:10 -07:00
a5f6423a76
Merge branch 'jumping-to-source-blocks'
2009-06-15 12:43:23 -07:00
aa5c9985bd
fixed bug in ruby session evaluation
2009-06-15 12:30:36 -07:00
112c7d9236
fixed non-session variable assignment in R
2009-06-15 12:17:58 -07:00
b8b8540892
some tests are failing with the new session :none stuff
2009-06-15 11:53:53 -07:00
82ecab19fb
R is working with no session
2009-06-15 11:49:06 -07:00
e2d3cc7830
shell commands are working
2009-06-15 11:29:25 -07:00
f2aaba8ca6
adding support for python with :session none
2009-06-15 11:14:32 -07:00
2fd494477b
cleaned up ruby
2009-06-15 10:54:14 -07:00
00365e1fbe
ruby can now be run with NO session
2009-06-15 10:13:48 -07:00
b60d873724
just getting started
2009-06-15 09:28:01 -07:00
ec38cffff0
not yet working
2009-06-14 22:06:11 -07:00
7984724a2b
expanding ** PROPOSED add =:none= session argument (for purely functional execution)
2009-06-14 18:57:41 -07:00
e985ff2014
response to shell-prompt-regexp bug
2009-06-14 18:48:43 -07:00
623831ddab
added util directory, including newest inf-ruby.el, should fix ruby bug
2009-06-14 18:42:44 -07:00
c89a69b266
Shell problem with escape chars in prompt is still there.
2009-06-14 19:29:34 -04:00
9040c8d246
re-organizing and re-categorizing TODOs under the task section
2009-06-14 12:36:46 -07:00
66d9bd1fb6
replies to new bugs
2009-06-14 12:22:11 -07:00
0866961436
Merge branch 'session' of git@github.com:eschulte/org-babel into session
...
Conflicts:
lisp/langs/org-babel-sh.el
org-babel.org
2009-06-14 12:16:17 -07:00
8360a676b9
passing all tests
2009-06-14 12:09:36 -07:00
a85cadced8
*** DONE function to bring up inferior-process buffer [4/4]
2009-06-14 12:02:25 -07:00
e962e83741
adding pop/prep session commands to org-babel-shell.el
2009-06-14 11:53:56 -07:00
88048186ac
R know how to prep and pop-to sessions
2009-06-14 11:48:11 -07:00
70cc6cb90f
A couple of bug reports.
...
(1) Shell evaluation is broken by weird escape chars in prompt;
(2) ruby evaluation not working for me as run-ruby expects one argument on my system.
Also fixed a harmless copy-paste error and whitespace adjustment to shorten lines.
2009-06-14 14:38:15 -04:00
2212742c54
python can now pop-to-session
2009-06-14 11:34:06 -07:00
d1bcb5e425
cleaned version of body is now added to kill ring
2009-06-14 11:10:09 -07:00
1b39a64fbe
ruby blocks can now pop to session buffer (optionally evaluating header-args)
2009-06-14 11:08:12 -07:00
5e41083bfa
adding ** TODO add =:none= session argument (for purely functional execution)
2009-06-14 10:32:10 -07:00
77c8f29968
** DONE test failing forcing vector results with =test-forced-vector-results= ruby code block
2009-06-14 10:24:29 -07:00
0019cc9c14
all tests seem to be passing
2009-06-14 10:23:44 -07:00
3cd99d0c2f
** DONE defunct R sessions
...
turns out I just had to use inferior-ess-send-input instead of comint-send-input
2009-06-14 10:20:59 -07:00
bf2b175ba8
fleshing out bug description
2009-06-14 10:05:26 -07:00
4a4046d73d
adding two bugs...
...
** TODO defunct R sessions
** TODO test failing forcing vector results with =test-forced-vector-results= ruby code block
2009-06-14 09:22:31 -07:00
d879ac0a12
seems to have passed all tests (I'm skeptical there still may be problems)
...
Specifically with the following two issues...
1) hanging on R code blocks when we have multiple R sessions in play
2) very occasionally the results of ruby code blocks are iffy
This whole session experience proves the general point that functional
code is easier to write and debug than code with state.
2009-06-14 09:18:42 -07:00
f31b3b2af2
fixed problem with new ruby sessions sometimes not initializing
2009-06-14 09:12:19 -07:00
8931657abf
adding bug: TODO ruby fails on first call to non-default session
2009-06-14 08:42:35 -07:00
0b75d89ccf
fixed error parsing empty results from ruby
2009-06-14 08:41:52 -07:00
08f92aebe5
passing some session tests, but still failing some tests
2009-06-13 19:35:48 -07:00
391f677fc7
`org-babel-comint-with-output' is now robust to errors
2009-06-13 18:28:06 -07:00
f4a1193a6e
now using org-babel-comint-with-output in org-babel-python.el
2009-06-13 17:30:02 -07:00
dd0392a4f2
extracted the "capture all output from comint session" behavior into a macro
2009-06-13 17:08:42 -07:00
6f9985a749
Synching org-babel.org across branches
2009-06-13 19:01:06 -04:00
3b026b806e
shell source blocks no longer hang
2009-06-13 14:49:57 -07:00
8ec719aefb
passing all tests, but have a couple more tasks before merge
...
1) broke reading from #+resname lines
2) shell sometimes stalls indefinitely
3) need condition-case for safe removal of filter when C-g during execution
4) need to add tests for session behavior
2009-06-12 17:02:37 -07:00
d261e178e9
passing all but one test
2009-06-12 16:50:53 -07:00
66162b2e4e
more looking into the remaining errors
2009-06-12 16:42:56 -07:00
b7c32fc5d8
passing almost all tests
2009-06-12 16:34:06 -07:00
d41466e5bc
now really passing all basic tests
2009-06-12 16:23:28 -07:00
8f9ae7314a
now passing basic-ruby test
2009-06-12 16:08:51 -07:00
5675e56585
sessions are now working in R
2009-06-12 15:31:52 -07:00
9623b16914
fixed some weird long-prompt issues with shell comint buffer
2009-06-12 15:20:23 -07:00
2dea1ea367
shell is now handling multiple sessions
2009-06-12 14:56:30 -07:00
f4798d3e83
python can now handle multiple sessions
2009-06-12 14:49:11 -07:00
368cdd2a3e
brought in org-babel.org changes from master
2009-06-12 13:35:04 -07:00
8093091103
DONE rework evaluation lang-by-lang [4/4]
2009-06-12 13:10:33 -07:00
431715e6db
shell support is pretty much working
2009-06-12 13:09:20 -07:00
b64be81363
moving language-specific files into their own directory
2009-06-12 08:59:38 -07:00
1be99d1b35
python is basically up to snuff (needs more work on sessions)
2009-06-12 08:46:00 -07:00
190a66c6af
ruby now respects the scalar/vector :results header arguments
2009-06-12 08:33:51 -07:00
82e7c86ea3
R evaluation is pretty much up to snuff
2009-06-12 08:29:21 -07:00
86e4597a7a
R results now obey the scalar/vector :results header arguments
2009-06-12 08:10:54 -07:00
e0dcbce75e
evaluation is working in R capturing both outputs and values
2009-06-12 07:55:33 -07:00
005e682948
making progress bringing org-babel-R.el into the new evaluation schema
2009-06-11 17:04:42 -07:00
2c1b04eecb
ruby is now working with sessions, output-based-results, and value(functional)-based-results
2009-06-11 15:34:34 -07:00
6698edbe83
finally think I'm on the right track for output vs. values, mostly working w/ruby
...
- moved ruby functions into their own buffer
- removed org-babel-sessions.el
- drastically scaled down org-babel-comint.el (may grow later if we
find duplication between language buffers)
- removed org-babel-script.el
- adjusted org-babel-init.el to reflect new file layout
For the big breakthrough see `org-babel-ruby-evaluate' in
org-babel-ruby.el. This will be the model upon which all future
language evaluations will be built.
2009-06-11 15:15:59 -07:00
8d0fd18933
working on org-babel-comint for automatically keeping a ring
2009-06-10 17:27:06 -07:00
9c70974391
started working on ruby 'script' execution
2009-06-09 16:33:36 -07:00
f3da4d0321
functional results now working with org-babel-comint and org-babel-script
2009-06-09 16:10:43 -07:00
39d1674f30
org-babel-R is now able to assign variables
2009-06-09 15:28:59 -07:00
Eric Schulte
Dan Davison