Commit Graph

261 Commits

Author SHA1 Message Date
Dan Davison c2bef96b7f Fix parser bug. 2009-07-23 22:32:03 -04:00
Dan Davison fadb5d5093 Change looking-at-p to looking-at.
Patch from Stephan Schmitt.
2009-07-23 11:06:44 -04:00
Eric Schulte 6b5747fdfa Revert "DONE take default values for header args from properties"
This is breaking many of our tests, so I'm reverting it until I can figure out a fix

This reverts commit 9936814ffc.
2009-07-22 19:02:12 -06:00
Eric Schulte 9936814ffc DONE take default values for header args from properties 2009-07-22 18:59:10 -06:00
Eric Schulte 51cfe9e468 DONE add =:tangle= family of header arguments
these can be used to inhibit tangling
2009-07-22 18:30:30 -06:00
Eric Schulte 4f15568a96 org-babel-ded-worg looks great, I hope you don't mind I'm adding a
"Reference / Documentation" section to hold documentation on the many
header arguments
2009-07-22 17:17:06 -06:00
Eric Schulte 34cf22bdaa DONE Fix nested evaluation
and commenting out debugging statements
2009-07-22 16:05:13 -06:00
Eric Schulte 66faa937f8 DONE deeply nested arguments still fails
added a function `org-babel-ref-split-args' for splitting arguments
  into top-level balanced expressions
2009-07-22 16:04:19 -06:00
Eric Schulte fe0532e509 DONE One supplied, one default
We are now skipping results lines when resolving references which
  specify arguments, as the arguments would change the value of the
  source-code block.
2009-07-21 16:46:26 -06:00
Eric Schulte 2bfa420c6a DONE empty parens () not recognised as lob call 2009-07-21 16:27:48 -06:00
Eric Schulte 53c08df3ae so it looks like regardless of the syntax used we're not overriding
the default argument values.
2009-07-21 12:22:59 -06:00
Eric Schulte 85dc35656d DONE gnuplot sessions 2009-07-20 13:33:53 -06:00
Eric Schulte e5b2e307fa removed the result-params from the let in org-babel-gnuplot,
keeping the vars line in the let for now because of the peculiar
  handling of the vars in gnuplot.
2009-07-20 13:10:11 -06:00
Eric Schulte 809462e3ee Merge branch 'master' into gnuplot
Conflicts:
	lisp/langs/org-babel-gnuplot.el

With respect to the conflict, I will try removing the lines you
mentioned before my next commit.
2009-07-20 13:07:29 -06:00
Eric Schulte c81479b161 added a :file header argument to gnuplot 2009-07-20 13:04:40 -06:00
Eric Schulte 307c7667db still working on gnuplot variable support 2009-07-19 16:40:28 -06:00
Dan Davison b766b094a0 Using temp function definition to tidy R evaluation code. 2009-07-19 18:03:33 -04:00
Eric Schulte 9bdddde454 gnuplot: switching to using user defined variables for handling variables
This will require gnuplot version 4.2 or up
2009-07-19 15:46:05 -06:00
Dan Davison 2b66de1c1b Reorganising R evaluation code.
With this change we avoid messing about extracting the output from the
comint buffer in the :results value case (the value has already been
written to file).
2009-07-19 17:45:00 -04:00
Eric Schulte 01c6bd2b33 pulled the gnuplot variable processing out into it's own function 2009-07-19 15:30:40 -06:00
Eric Schulte 20eec8d94b additional requirements and initialization for gnuplot 2009-07-19 15:01:47 -06:00
Dan Davison 162b522728 Fixing srcname function call regexps.
But still some improvement of this to be done (see bugs section).
2009-07-19 14:29:10 -04:00
Dan Davison aa1747b065 Quite a few revisions / additions to the tasks and bugs lists. 2009-07-19 13:56:38 -04:00
Dan Davison e4d14d41ec This should have been part of the parent commit (911e77a7c9) 2009-07-19 13:55:42 -04:00
Eric Schulte 585f69d1f7 Merge branch 'master' into gnuplot 2009-07-19 11:12:09 -06:00
Eric Schulte 28c3262848 fixed variable name in org-babel-R-evaluate 2009-07-19 11:06:44 -06:00
Eric Schulte 91301b8c29 Merge branch 'master' into gnuplot 2009-07-19 11:02:17 -06:00
Dan Davison 911e77a7c9 Code rearrangement: restrict R column names changes to org-babel-R.el.
On reflection this is (currently) R-specific functionality and should
not affect the code in org-babel.el.
2009-07-19 12:01:00 -04:00
Dan Davison 8294122f8f Trying to retain whitespace in output results from R.
I don't believe this solves it, but chomp is more the right thing to
do than trim. I'd like to retain all the whitespace so that alignment
of columns is correct in stdout.
2009-07-19 01:47:37 -04:00
Dan Davison 062bc09d84 Adding support for column names (header line) when using R.
Unlike the other languages, it's central to R to be able to index
columns of a data frame d, either by d[,"columnname"] of d$columnname.

With this change, if colnames are present in the *input* from
org-babel, the corresponding R variable is *always* constructed with
the colnames.

In addition, with the :colnames header arg, the *output* to elisp/org
buffer contains the colnames separated from the rest of the table by
'hline. This behaviour is not default because other languages may
expect a simple table without the 'hline.
2009-07-19 01:07:07 -04:00
Eric Schulte 4ff540bfd7 started bringing in options from org-plot 2009-07-18 18:05:11 -06:00
Dan Davison ef6668df61 Merging examplizing-output into master 2009-07-18 18:10:14 -04:00
Dan Davison bcfa3b95c7 Add ability to remove #+begin_example blocks of output. 2009-07-18 17:47:30 -04:00
Eric Schulte fcfe110fef correctly handling exclusive :exports params 2009-07-18 14:24:47 -06:00
Eric Schulte 44ff72261c moved org-babel-merge-results into anonymous function in flet 2009-07-18 14:24:46 -06:00
Dan Davison c2b255e0da Changing default min lines for block output to 10 2009-07-18 15:52:51 -04:00
Dan Davison 4dfe45cdf1 Trivial: function name change for clarification. 2009-07-18 15:39:00 -04:00
Dan Davison 04a4a4862e Using #+begin_example...#+end_example blocks for output. 2009-07-18 15:38:21 -04:00
Eric Schulte fdae720848 removed large block of lang-specific comments from org-babel.el
I assume that since all tests are passing we no longer need this old
code.  Either way we can always retrieve it from version control.
2009-07-17 22:10:43 -06:00
Eric Schulte 6661bb70d5 new default export parameters 2009-07-17 22:08:02 -06:00
Eric Schulte bda750be2f combination of :results parameters now takes mutually exclusive parameter groups into consideration 2009-07-17 22:06:37 -06:00
Eric Schulte 8408187f4a using org-babel-merge-params for inline header arguments 2009-07-17 21:36:47 -06:00
Dan Davison 83fc113e29 This was just an idea. We could do it but I'm reverting for now.
Revert "Make org-babel-tangle comment with ;;*."

This reverts commit c6b628d3ad.
2009-07-17 14:51:49 -04:00
Dan Davison 017d46e50f Reinstated force-results-to-vector: passing all tests in table. 2009-07-17 14:37:43 -04:00
Dan Davison 8c9d8b6c28 Don't attempt to remove result when :results silent. 2009-07-17 13:58:04 -04:00
Dan Davison 9ebb554527 o-b-merge-params function was not allowing whitespace around the '=' sign.
At some point it might be useful (to me at least) to clarify our rules
regarding whitespace, and make guidelines for using " \t\f\n\v\r" et
al (and [:space:]?).
2009-07-17 13:27:56 -04:00
Dan Davison 7eecca6db5 Reinstating a previous change that got lost in the last merge somehow. 2009-07-17 10:49:26 -04:00
Dan Davison 72ccd88c97 Merging master into results.
THis brings in the bugfix from 4f15280631, as well as gnuplot. The bugfix required manual resolution as it had already been partially addressed in this branch. Also, the interaction of the possibility of being on a #+lob line and the possiblity of being in the middle of an org-babel-exp-results call, meant I had to rearrange things a bit, so this commit has new changes in org-babel-where-is-src-block-result in addition to the merge.
2009-07-17 09:54:11 -04:00
Dan Davison 5d49db67ab Correcting up cut/paste mistakes made in manual conflict resolution. 2009-07-17 00:50:02 -04:00
Eric Schulte 1fa18830ab gnuplot is able to generate graphs, but needs much more work 2009-07-16 22:20:58 -06:00