Commit Graph

26220 Commits

Author SHA1 Message Date
Daniel Kraus cd2355a204
ob-clojure.el: Fix compiler warning
* lisp/ob-clojure.el (ob-clojure-eval-with-cider): Silence compiler
warning about unused argument 'params'.
2023-03-19 21:39:07 +01:00
Ihor Radchenko a645a6d679
Merge branch 'bugfix' 2023-03-19 14:06:34 +01:00
Ihor Radchenko 4c01eba265
org-texinfo-supports-math-p: Fix CI test failures
* lisp/ox-texinfo.el (org-texinfo-supports-math-p): Consider
compilation error as indication that math is not supported.  texinfo
compiler throws "unknown command `displaymath'" error in such case,
causing `org-texinfo-compile' to err as well.

Fixes CI tests failures when testing with Texinfo versions with no
math support.

https://builds.sr.ht/~bzg/job/959487
2023-03-19 13:58:07 +01:00
Ihor Radchenko 533a83a989
org-compile-file: Expose logs when running Org tests
* lisp/org-macs.el (org-compile-file): Output logs on failure when
running Org test suite.  This is useful to expose more information in
CI tests.
2023-03-19 11:10:04 +01:00
Max Nikulin 07ea7fc443
org-manual.org: $n$-th is not math
* doc/org-manual.org (LaTeX fragments): Do not state that dash is
allowed after single "$" math delimiter and recommend "\(...\)".

Detection of "$-" as closing math delimiters has been broken since 2015
as a side effect of using punctuation class in regular expressions while
dash is considered as a word constituent.  See commits
6779f8f424 and c0369a7984.  Bring the manual in accordance to the code
instead of allowing "($-2 change)" false positives.  Users who do not
like "\(...\)" constructs may use a helper for typing it and may change
how it is displayed to minimize visual noise by fontification, see

- Eric S Fraga to emacs-orgmode. Re: Depreciating TeX-style LaTeX
  fragments. Sun, 16 Jan 2022 12:10:30 +0000.
  <https://list.orgmode.org/87k0ezdgp5.fsf@ucl.ac.uk>
- Ihor Radchenko to emacs-orgmode. Re: [PATCH] Add support for $…$ latex
  fragments followed by a dash. Thu, 27 Jan 2022 16:28:10 +0800.
  <https://list.orgmode.org/87r18t7fc5.fsf@localhost>
2023-03-18 13:19:40 +01:00
Ihor Radchenko 6bf8e44d3f
Merge branch 'bugfix' 2023-03-18 13:03:31 +01:00
Ihor Radchenko 92471e5303
org-agenda-run-series: Fix `org-agenda-list' call
* lisp/org-agenda.el (org-agenda-run-series): Fix arguments in the
call.  "agenda*" should include appointments and thus HOURS argument
should be non-nil.  See `org-agenda' for analogous call.
2023-03-18 13:01:58 +01:00
Ihor Radchenko 3b9ffc6868
org-latex-export-to-latex: Use nil arg for `write-region'
* lisp/ox.el: Use BEG=nil instead of explicit arguments to
`write-region'.  This simplifies the code.
2023-03-18 12:33:15 +01:00
Ihor Radchenko 4cad6c8eaf
* lisp/Makefile: Remove references to org-contrib
Since org-contrib is now a separate package, the parts of Makefile
that are referring to it are no longer needed.
2023-03-16 13:34:34 +01:00
Daniel Kraus 6efb073463
ob-clojure.el: Fix results output, support clojure-cli
* lisp/ob-clojure.el (org-babel-clojure-backend): Add support for
clojure-cli.
* lisp/ob-clojure.el (org-babel-clojurescript-backend): Move nbb to
clojurescript.
* lisp/ob-clojure.el (org-babel-expand-body:clojure)
* lisp/ob-clojure.el (ob-clojure-eval-with-cider): Return only the
last expression when :results is not set or value, and return only
stdout when :results is set to output.
* lisp/ob-clojure.el (ob-clojure-eval-with-cmd): Rename function as
it is not only for babashka.
* lisp/ob-clojure.el (org-babel-execute:clojure): Differentiate
between Clojure and ClojureScript source blocks.

The problem was that the ob-clojure results where not correctly
taking the results parameter into account.
E.g. with the cider backend, you would get all printed or returned
values for each line in your block:

(def small-map {:a 2 :b 4 :c 8})
{:some :map}
(prn :xx)
(:b small-map)

| #'user/small-map |
| {:some :map}     |
| 4                |

or for babashka you would only get the printed values but not the
last return value:
(def small-map {:a 2 :b 4 :c 8})
{:some :map}
(prn :xx)
(:b small-map)

: :xx

Now when you specify :results value, the result is only the last
returned value, and with :results output you get all values
printed to stdout.
So the examples above would all result in the same:
(def small-map {:a 2 :b 4 :c 8})
{:some :map}
(prn :xx)
(:b small-map)

: 4
2023-03-16 11:25:41 +01:00
Ihor Radchenko 635a601dd5
org-self-insert-command: Do not trigger folding checks
* lisp/org.el (org-self-insert-command): Do not trigger folding checks
for interactive edits.
2023-03-15 15:18:23 +01:00
Ihor Radchenko 0e7b5626ef
Merge branch 'bugfix' 2023-03-14 14:51:57 +01:00
Ihor Radchenko 6fc420167c
org-persist: Fix file path calculation
* lisp/org-persist.el (org-persist-read:file):
(org-persist-read:url): Use `org-file-name-concat' instead of simple
`concat'.
2023-03-14 14:45:00 +01:00
Ihor Radchenko d2e8a118f6
Merge branch 'bugfix' 2023-03-14 13:21:28 +01:00
Pedro Andres Aranda Gutierrez 3eb51d8dbc
* lisp/ox-latex.el (org-latex-generate-engraved-preamble): Fix typo 2023-03-14 13:20:29 +01:00
Ihor Radchenko 3d04af3826
org-latex-paragraph: Ensure that paragraphs are not split by empty lines
* lisp/ox-latex.el (org-latex-paragraph): If export creates single
paragraph contents with empty lines, remove the empty lines to ensure
that we retain a single paragraph.

Reported-by: Max Nikulin <manikulin@gmail.com>
Link: https://orgmode.org/list/tufdb6$11h2$1@ciao.gmane.io
2023-03-14 13:11:37 +01:00
Ihor Radchenko 5f817f21fc
Merge branch 'bugfix' 2023-03-12 12:25:39 +01:00
Xi Lu a8006ea580
* lisp/ob-latex.el: Fix command injection vulnerability
(org-babel-execute:latex):
Replaced the `(shell-command "mv BAR NEWBAR")' with `rename-file'.

TINYCHANGE
2023-03-12 12:23:46 +01:00
Tim Ruffing f5987b37d4
Don't reset `org-todo-keywords-for-agenda' when org-agenda-multi
* org-agenda.el (org-prepare-agenda): Don't reset
`org-todo-keywords-for-agenda' when org-agenda-multi.

Fixes a bug with TODO keywords that came to light in org-modern,
see https://github.com/minad/org-modern/issues/26.

This is very similar to cd2d138883,
which fixed the same for `org-done-keywords-for-agenda` (to fix
a similar styling issue).

TINYCHANGE
2023-03-11 11:18:52 +01:00
Ihor Radchenko d6e75d0eeb
org-read-date: Do not consider `org-extend-today-until' with default time
* lisp/org.el (org-read-date): When DEFAULT-TIME time provided, prefer
it even when `org-extend-today-until' dictates -1 day shift.  We
should only consider `org-extend-today-until' for actual today times,
not for future dates, where is becomes confusing.

Reported-by: Tim Ruffing <crypto@timruffing.de>
Link: https://orgmode.org/list/3489c1917ad4be0625ea5f0b2c1b0f2b72ea39e9.camel@timruffing.de
2023-03-11 10:30:15 +01:00
Ihor Radchenko 6ab611720d
Merge branch 'bugfix' 2023-03-10 12:10:47 +01:00
Ihor Radchenko dd25e2704f
org-src--construct-edit-buffer-name: Fix docstring
* lisp/org-src.el (org-src--construct-edit-buffer-name): Fix the
docstring to conform to the existing buffer name pattern.

Reported-by: Rudolf Adamkovič <salutis@me.com>
Link: https://orgmode.org/list/20230302140224.6169-1-salutis@me.com
2023-03-10 12:08:44 +01:00
Ihor Radchenko 8589de94d8
Merge branch 'bugfix' 2023-03-07 14:09:48 +01:00
Rudolf Adamkovič eb6379a417
Fix LaTeX spelled as Latex
etc/ORG-NEWS (Non-floating minted listings in LaTeX export):
* lisp/ob-latex.el: (org-babel-execute:latex):
* lisp/org-element.el:
* lisp/ox-ascii.el:
* lisp/ox-html.el:
* lisp/ox-latex.el:
* lisp/ox-md.el:
* lisp/ox-odt.el:
* testing/examples/ob-maxima-test.org (LaTeX output):
* testing/lisp/test-org-element.el (test-org-element/cache): Spell LaTeX
correctly.
2023-03-07 14:08:40 +01:00
Rudolf Adamkovič 4f6bf89547
Fix BibTeX spelled as Bibtex
* lisp/ol-bibtex.el: Spell BibTeX correctly
* etc/ORG-NEWS (Org-BibTeX -- major improvements): Spell BibTeX correctly
2023-03-07 14:06:01 +01:00
Ihor Radchenko c0a9c9edea
test-org-clock/mode-line: Update the docstring
* testing/lisp/test-org-clock.el (test-org-clock/mode-line): Link to
the info node explicitly.

Link: https://orgmode.org/list/m28rgbq8wo.fsf@me.com
2023-03-07 14:03:37 +01:00
Ihor Radchenko 12883765d2
org-babel-import-elisp-from-file: Fix the docstring
* lisp/ob-core.el (org-babel-import-elisp-from-file): Document all the
arguments.
2023-03-07 14:03:02 +01:00
Ihor Radchenko 077c4adabf
Merge branch 'bugfix' 2023-03-07 13:33:18 +01:00
Xi Lu 8f8ec2ccf3
* lisp/ob-latex.el (org-babel-execute:latex): Fix command injection vulnerability
Link: https://orgmode.org/list/tencent_5C4D5D0DEFDDBBFC66F855703927E60C7706@qq.com

TINYCHANGE
2023-03-07 13:26:13 +01:00
Ihor Radchenko e52c531e17
Merge branch 'bugfix' 2023-03-05 13:22:02 +01:00
Rudolf Adamkovič 3d817c52c9
org-clock: Add a trailing space to the mode line string
* lisp/org-clock.el (org-clock-get-clock-string): End the mode line
element in a space, instead of beginning with space, to make it play
well with other mode line strings, which typically end a space.  For
reference, see the mode line string of the Display Time mode.
2023-03-05 13:20:30 +01:00
Ihor Radchenko 913e40a5bb
Merge branch 'bugfix' 2023-03-05 13:08:55 +01:00
Max Nikulin 233a8479ca
orgcard.tex: Fix `org-force-cycle-archived' binding
* doc/orgcard.tex (Capture): Fix `org-force-cycle-archived' binding.

Changed in the release 9.4 to avoid conflict with tab-bar.el, see

9092c289b 2020-06-01 14:39:28 +0200 Bastien: Bind `org-force-cycle-archived' to C-c C-TAB
2023-03-05 13:07:52 +01:00
Ihor Radchenko 1b1d314ada
* lisp/org.el: Bump Org version on development branch 2023-03-05 12:56:02 +01:00
Ihor Radchenko f93cc661c6
org-element-set-contents: Do alter the anonymous parents
* lisp/org-element.el (org-element-set-contents): Do alter anonymous
elements (el1 el2 ...).  Such elements are used, for example, when
parsing keyword values during export, like :title.
* testing/lisp/test-org-element.el (test-org-element/set-contents):
Add test.

The patch fixed bug during export when exporting a subtree with
option stat:nil.  The :title during subtree export is taken from the
heading title and parsed.  However, the parsed value is stored outside
the parse tree, in :title property of the INFO channel.  The parsed
value does get filtered through `org-export--prune-tree', but before
this commit, `org-element-set-contents' did not actually alter the
out-of-AST-tree parent lists of elements.

Reported-by: Leo Butler <Leo.Butler@umanitoba.ca>
Link: https://orgmode.org/list/87mt4w8epo.fsf@t14.reltub.ca
2023-03-03 16:31:37 +01:00
Ihor Radchenko 973669389b
Merge branch 'bugfix' 2023-03-03 15:57:17 +01:00
Gerard Vermeulen e8010e8a91
org.el: Sync org-babel-load-languages with Babel files in Org
* lisp/org.el (org-babel-load-languages): Sync with Babel files

(org-babel-load-languages): Synchronize the defcustom with the rest of
the code base, group languages by Org Babel file, and spell languages
using camel case (the current fashion).

Link: https://list.orgmode.org/712f2ef5b4edb2d9b565f6467e582030@posteo.net/
2023-03-03 15:55:14 +01:00
Ihor Radchenko 911d6a1027
org-manual: Clarify that :eval yes obeys `org-confirm-babel-evaluate'
* doc/org-manual.org (Limit code block evaluation): Clarify :eval yes
value.

Reported-by: Dan Drake <dan.drake@gmail.com>
Link: https://orgmode.org/list/CAKqbAeFRGDzQQQkXHKvDPtgM7NYybWgxpJj3yoRKnuD2bSwyVw@mail.gmail.com
2023-02-28 13:34:45 +03:00
Ihor Radchenko aa22497876
Merge branch 'bugfix' 2023-02-26 14:43:54 +03:00
Damien Cassou f9aeba5dd7
org.el: Avoid crash in `org-file-contents' in case of network failure
* lisp/org.el (org-file-contents): Wrap the
`url-retrieve-synchronously' call into a `condition-case' block to
avoid throwing an error when NOERROR is non-nil.

TINYCHANGE
2023-02-26 14:42:13 +03:00
Ihor Radchenko 351279ffae
org-diary-to-ical-string: Make sure that temporary file/buffer is cleaned
* lisp/org.el (org-diary-to-ical-string): Clean temporary file buffer
on error.

Reported-by: Alexei Gilev <gerardomoro37@gmail.com>
Link: https://orgmode.org/list/CAF4Fj9gUBj4Ap4noTLP3aSG4owXJ2nydxaqwT4cF5x9DcdhQmg@mail.gmail.com
2023-02-23 12:41:38 +03:00
Ihor Radchenko 2e883b21a7
org-sbe: Allow quoting string values
* lisp/ob-table.el (org-sbe): Allow quoting string values of variables
with "$".  Update the docstring.
* testing/lisp/test-ob-table.el (test-ob-table/sbe): Add test.  Do not
use `org-test-at-id' in favor of more illustrative
`org-test-with-temp-text'.  The latter does not force users to search
the ID in reference Org file.
* testing/examples/babel.org (calling code blocks from inside table):
Remove unused example.

Reported-by: 赵一宇 <zhyznd@163.com>
Link: https://orgmode.org/list/40651be0.3e3b.1867971e644.Coremail.zhyznd@163.com
2023-02-23 12:29:18 +03:00
Ihor Radchenko cbab9ebf55
org-manual.org: Clarify that Imenu support is activated in future Org buffers
* doc/org-manual.org (Packages that Org cooperates with): Clarify that
imenu should be loaded before Org mode is loaded in current buffer.

Reported-by: Kuba Orlik <kontakt@kuba-orlik.name>
Link: Emacs bug#61685
2023-02-22 14:11:11 +03:00
Ihor Radchenko 236bd45849
Merge branch 'bugfix' 2023-02-22 13:20:47 +03:00
Ihor Radchenko 7a90f596d9
org-clock-timestamps-change: Fix when on opening timestamp
* lisp/org-clock.el (org-clock-timestamps-change): Do not rely on
global `org-last-changed-timestamp'.
*
testing/lisp/test-org-clock.el (test-org-clok/org-clock-timestamps-change):
Add new test.

Reported-by: sting.startup-0y@icloud.com
Link: https://orgmode.org/list/2380D54F-DE06-4CBE-88AC-5906A6E9253A@gmail.com
2023-02-22 13:19:06 +03:00
Ihor Radchenko d94f4066e0
oc-natbib: Provide a fallback bibliography style
* lisp/oc-natbib.el (org-cite-natbib-bibliography-style): New custom
option for default bibliography style.
(org-cite-natbib-export-bibliography): Use the new custom option.
* etc/ORG-NEWS (New ~org-cite-natbib-export-bibliography~ option
defining fallback bibliography style): Document the new option.

If we do not specify a bibliography style, LaTeX export will fail.
After the patch, the following simple-minded Org document will export
without errors:

 #+title: Testing org-cite \LaTeX export
 #+latex_header: \usepackage{natbib}
 #+bibliography: bibliography.bib
 #+options: toc:nil
 #+cite_export: natbib

 Hello World! This is a citation: [cite:@citationkey2023]

 #+print_bibliography:
2023-02-20 16:48:48 +03:00
Matthew Trzcinski aa158da69b test-ob-shell: Fix test buffers not being removed on success
* test-ob-shell.el (test-ob-shell/remote-with-stdin-or-cmdline): Kill
test related buffers when test is successful.  See ce4f7db3c.
2023-02-19 18:19:45 -05:00
Ihor Radchenko 747e60629f
org-cycle: Allow intuitively used values of of `org-startup-folded'
* lisp/org-cycle.el (org-cycle-set-startup-visibility): Recognize
`org-startup-folded' set to symbols `fold', `nofold', and `showall'.
They are used as #+STARTUP: option and often tried blindly by users.
2023-02-18 15:31:14 +03:00
Ihor Radchenko fe92a3cedb
Provide a uniform way to inform users about missing third-party packages
* lisp/org-macs.el (org-require-package): New macro trying to load a
library and displaying custom error message or warning on failure.
The actual package (not library) name can be provided as optional
argument.

* lisp/ob-R.el (org-babel-R-initiate-session):
* lisp/ob-clojure.el (ob-clojure-eval-with-inf-clojure):
(ob-clojure-eval-with-cider):
(ob-clojure-eval-with-slime):
* lisp/ob-forth.el (org-babel-forth-session-execute):
* lisp/ob-gnuplot.el (org-babel-execute:gnuplot):
(org-babel-gnuplot-initiate-session):
* lisp/ob-haskell.el (org-babel-interpret-haskell):
(org-babel-haskell-initiate-session):
* lisp/ob-js.el (org-babel-execute:js):
(org-babel-js-initiate-session):
* lisp/ob-julia.el (org-babel-julia-initiate-session):
* lisp/ob-lisp.el (org-babel-execute:lisp):
* lisp/ob-ocaml.el (org-babel-prep-session:ocaml):
* lisp/ob-octave.el (org-babel-octave-initiate-session):
* lisp/ob-processing.el (org-babel-processing-view-sketch):
* lisp/ob-ruby.el (org-babel-execute:ruby):
(org-babel-ruby-initiate-session):
* lisp/ol-bbdb.el (org-bbdb-open):
(org-bbdb-complete-link):
(org-bbdb-anniv-export-ical):
* lisp/org-agenda.el:
* lisp/org-plot.el (org-plot/gnuplot):
* lisp/org.el:
* lisp/ox-ascii.el (org-ascii-table):
* lisp/ox-html.el (org-html-htmlize-generate-css):
* lisp/ox-org.el: Use the new macro.

* lisp/oc-csl.el: Add FIXME. oc-csl uses a custom function doing
similar job.

* lisp/ob-js.el (org-babel-js-initiate-session): Add FIXME noting that
the third-party package is outdated.
2023-02-17 17:09:23 +03:00
Ihor Radchenko 18a146a9d5
org-fold-core-previous-visibility-change: Fix edge case
* lisp/org-fold-core.el (org-fold-core-next-visibility-change): Take
into account that `previous-single-char-property-change' move the
point to the first position where the property is still unchanged.
* lisp/org-cycle.el (org-cycle-set-visibility-according-to-property):
Ignore invisibility when skipping subtree.

Reported-by: Philipp Kiefer <phil.kiefer@gmail.com>
Link: https://orgmode.org/list/96becf12-9a5a-2fc2-0105-a41528be1f66@gmail.com
2023-02-17 14:58:32 +03:00