The commit d4b739fbf2 added the "none" header argument but didn't
add it to the `org-babel-insert-result' documentation string. Put it
in the doc string so that users can discover it.
Signed-off-by: Yasushi SHOJI <yashi@spacecubics.com>
* lisp/ob-core.el (org-babel-expand-noweb-references): Fix order when
searching for named babel blocks so that blocks in the current buffer
are always found first. This fixes a bug where stale versions of
blocks that have been ingested into the library of babel were being
preferentially tangled instead of newly modified versions from the
current buffer.
* lisp/ob-core.el (org-babel-edit-distance): Rename function
`org-string-distance' and move it to "org-compat.el".
(org-babel-check-src-block): Use `org-string-distance' instead.
* lisp/org-compat.el: Add `org-string-distance' for a future
deprecation in favor of `string-distance'.
* lisp/ob-core.el (org-babel-result-end): Alloow the result to end
into a LaTeX environment.
By adding latex-enviroment to the possible results types, a much
richer experience is possible for backends that can produce
LaTeX-formatted maths as their results (for example: Calc, Julia with
Latexify, Python with SymPy, Octave with symbolic). This is superior
to a LaTeX export block as LaTeX environments can be (1) rendered
inline, and (2) better used in non-LaTeX export formats (e.g. HTML
with MathJax). Without this, backends can output a LaTeX environment,
but new results will be added in front instead of replacing the
environment.
Porting from Emacs's master to Org's maint branch has been on hold
leading up to the Emacs 27.2 release to avoid any required fixup syncs
carrying those commits into the emacs-27 branch. This merge brings
those changes into master. The km/from-emacs-master branch should be
merged to maint when Emacs 27.2 has been released (assuming Org 9.5
hasn't been released, in which case maint will be tracking 9.5.x and
already include these changes).
* lisp/ob-comint.el (org-babel-comint-in-buffer)
(org-babel-comint-with-output): Use `declare`.
* lisp/ob-core.el (org-babel-map-src-blocks): Use `declare`.
(org-babel-result-cond): Simplify edebug spec.
* lisp/org-clock.el (org-with-clock-position, org-with-clock):
* lisp/org-agenda.el (org-agenda-with-point-at-orig-entry):
* lisp/ob-tangle.el (org-babel-with-temp-filebuffer): Use `declare`.
Use `declare` instead of `def-edebug-spec` in most places
f8dbefbaa59bb17dd4a2dfa4d9ff560c46785792
Stefan Monnier
Fri Feb 12 16:08:01 2021 -0500
* lisp/ob-core.el (org-babel--string-to-number): Put hyphen last in
alternative.
* lisp/org-agenda.el (org-agenda-filter): Escape '+' correctly.
Follow good regexp practice
46394dff7f01e7fe4af06a6c344e151af5c3eef4
Mattias Engdegård
Fri Dec 18 14:35:09 2020 +0100
* doc/org-manual.org (Type): Document empty vector argument for
file-desc.
* etc/ORG-NEWS (New argument for ~file-desc~ babel header): Add entry
to NEWS.
* lisp/ob-core.el (org-babel--file-desc): Add new function to evaluate
file description value.
(org-babel-execute-src-block): Correctly evaluate file description
when executing src block.
(org-babel-insert-result): Correctly evaluate file description value
when inserting the result of src block execution into the buffer.
* testing/lisp/test-ob.el (test-ob/file-desc-header-argument): Add
test case for new behavior.
* lisp/ob-core.el (org-babel-expand-noweb-references): Don't anchor
noweb regexp at start of line to allow multiple matches per line.
* testing/lisp/test-ob-tangle.el (ob-tangle/multiple-noweb-in-line):
Add test.
This fixes a regression introduced by c1aed9f80 (ob-core: Refactor
`org-babel-expand-noweb-references', 2020-01-12), which was part of
the 9.4 release.
Reported-by: Tom Gillespie <tgbugs@gmail.com>
Ref: https://orgmode.org/list/CA+G3_PO2yO1jMMpdrkc39BGQQ2eU5X4FzTEJVotjDJo-50dsqQ@mail.gmail.com
* lisp/ob-core.el (org-babel--expand-body): New function.
(org-babel-check-confirm-evaluate):
(org-babel-execute-src-block): Use org-babel--expand-body.
As of 727c6d7fe (lisp/ob-core.el: org-babel-check-confirm-evaluate
strip coderefs, 2020-09-04), org-babel-check-confirm-evaluate and
org-babel-execute-src-block use the same logic to expand the body and
strip coderefs. Move that code to a helper function.
This patch is functionally equivalent to the patch originally proposed
by Tom Gillespie at
https://orgmode.org/list/CA+G3_PNi3uMvBiWgBdKuC3C6VJt1T1j-RKH43LRqYbr+4NS8ZA@mail.gmail.com
* lisp/ob-core.el (org-babel-check-confirm-evaluate): strip coderefs
before passing the body of the block to org-confirm-babel-evaluate
using the same let block as is used in org-babel-execute-src-block.
* lisp/ob-core.el (org-babel-result-to-file): Use
`buffer-base-buffer' so that `buffer-file-name' returns correct
results in indirect buffers too.
See <https://orgmode.org/list/87eeos3w7v.fsf@localhost>
TINYCHANGE
* lisp/ob-core.el (org-babel-import-elisp-from-file): Don't try to
convert empty file to a table.
* testing/lisp/test-ob.el (test-ob/import-elisp-from-file): Add tests.
If org-babel-import-elisp-from-file is called with an empty file
(which many ob- libraries do when there are no results), feeding that
to org-table-import leads to a beginning-of-buffer error. Before
14878f3f9 (ob-core: Display warning on failure to read results,
2020-05-21), this error was hard to notice because, after catching it,
it was reported as a quickly buried message. After that commit, it is
displayed as a warning, which is not appropriate for the common and
unproblematic case of empty results.
Avoid the warning by only doing the table conversion if the file has
content. Another option would be to do the table conversion but add a
beginning-of-buffer arm to the surrounding condition-case. However,
that risks swallowing other sources of that error.
Reported-by: Colin Baxter <m43cap@yandex.com>
<https://orgmode.org/list/878se3nhbj.fsf@yandex.com>
* ob-core.el (org-babel-execute-src-block): Source code block header
argument `:file-mode' can set file permissions if `:file' argument is
provided.
(org-babel-common-header-args-w-values): Add `:file-mode' to common
header arguments.
TINYCHANGE
* lisp/ob-core.el (org-babel-check-confirm-evaluate): Expand noweb
references in the body passed to org-confirm-babel-evaluate.
* testing/lisp/test-ob.el (test-ob/check-eval-noweb-expanded): New
test.
When noweb references are set to be expanded for evaluation,
org-confirm-babel-evaluate should receive the expanded body so that it
can make its decision based on what actually will be evaluated
(without resorting to calling org-babel-get-src-block-info itself).
Note that this results in up to three calls to
org-babel-expand-noweb-references. Possible ways to avoid this are
discussed at the thread referenced below.
Reported-by: Tom Gillespie <tgbugs@gmail.com>
https://orgmode.org/list/CA+G3_PNi3uMvBiWgBdKuC3C6VJt1T1j-RKH43LRqYbr+4NS8ZA@mail.gmail.com/
* lisp/ob-core.el (org-babel-import-elisp-from-file): Show handled
errors with display-warning rather than a message because the latter
is quickly overridden by subsequent messages, making it difficult if
not impossible for the user to spot.
The scope of the save-window-excursion call would need to be reduced
for the display-warning buffer to be shown, but nothing appears to
change the window configuration, so just drop the
save-window-excursion call.
Reported-by: Greg Minshall <minshall@umich.edu>
<2449663.1588516024@apollo2.minshall.org>
* lisp/ob-core.el (org-babel-current-result-hash):
(org-babel-hide-hash):
(org-babel-hide-all-hashes):
(org-babel-result-hide-all):
(org-babel-hide-result-toggle-maybe):
(org-babel-hide-result-toggle):
(org-babel--clear-results-maybe):
(org-babel-remove-result): Bind `case-fold-search' to t before looking
for `org-babel-result-regexp'.
* lisp/ob-core.el (org-babel-remove-temporary-directory):
Use (rx (or (not ".") "...")), translated into "[^.]\\|\\.\\.\\.", to
match anything but "." and "..".
Fix edge case errors in filename-matching regexps
4acdd7fe58ae9f94102afeca67b0383141d597da
Mattias Engdegård
Tue Apr 14 12:25:16 2020 +0200
Note(km): Replaced bare "." with (any ".") for Emacs < 27
compatibility. 4acdd7fe5 was on the emacs-27 branch, but a commit on
their master (d5a7df8c0) will supersede this.
These both show up when compiling files separately (e.g., 'make
single').
ob-core already assumes ob-tangle is loaded based on declared
functions, presumably because ob.el is given responsibility for
collectively loading these pieces. org.el loads org-attach within the
body of a function before calling org-attach-dir.
* lisp/ob-core.el (org-babel-result-end): Handle results in special
blocks.
* testing/lisp/test-ob.el (test-ob/replace-special-block-result): New
test.
Make regexps smaller and faster by removing terms that are superfluous
by virtue of standing next to another term that matches more. See
https://lists.gnu.org/archive/html/emacs-devel/2020-01/msg00949.html
for details.
* lisp/ob-core.el (org-babel-remove-result):
* lisp/ob-fortran.el (org-babel-fortran-ensure-main-wrap):
* lisp/org-capture.el (org-capture-set-target-location):
* lisp/org-compat.el (org-maybe-keyword-time-regexp):
* lisp/org-table.el (org-table-expand-lhs-ranges):
Remove subsumed repetitions.
Remove subsumed repetitions in regexps
770f76f050376bbd77a3cc8cf44db57cf855a27c
Mattias Engdegård
Thu Feb 20 16:05:18 2020 +0100
* lisp/ob-core.el (org-babel-expand-noweb-references):
* lisp/ob-tangle.el (org-babel-tangle): Use `org-src-get-lang-mode' so
as to use proper major mode.
Reported-by: immanuel <immanuel.litzroth@gmail.com>
<http://lists.gnu.org/r/emacs-orgmode/2019-08/msg00272.html>
* lisp/ob-core.el (org-babel-execute-src-block): Fix behaviour of
":dir path" when ":mkdirp" is not defined.
* testing/lisp/test-ob.el (test-ob-core/dir-mkdirp): Add a test case.
TINYCHANGE
Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:
> Could you provide a commit message for your patch?
* lisp/ob-core.el (org-babel-make-language-alias): Add edit-prep to
the list of defalias'ed functions.
* lisp/ob-core.el (org-babel-execute-src-block): Make directory if
":dir path" does not exist when ":mkdirp yes" exist.
* doc/org-manual.org (Header arguments): Document it.
* testing/lisp/test-ob.el: Add a specific testing file for ob-core.el,
and add a testing for ":mkdir yes" work with :dir header argument
usage.
* lisp/ob-core.el (org-babel--string-to-number): Fix the regular expression.
* testing/lisp/test-ob.el (test-ob/string-to-number): Test cases.
If people write the data in the form "0001"", it means that he wants to
treat it as a string.
TINYCHANGE
> #+name: TBL
> | id | name | age |
> |------|--------|-----|
> | 0001 | Apollo | 16 |
> | 0002 | Bmw | 16 |
>
> #+BEGIN_SRC emacs-lisp :results value pp :var tbl=TBL
> (mapc 'print tbl)
> #+END_SRC
>
> #+RESULTS:
> : (("0001" "Apollo" 16)
> : ("0002" "Bmw" 16))
TINYCHANGE
* lisp/ob-core.el (org-babel-strip-quotes): Remove function.
* lisp/org-macs.el (org-strip-quotes): New function.
* lisp/org-compat.el (org-babel-strip-quotes): Alias for new function.
* lisp/ob-haskell.el (org-babel-execute:haskell):
* lisp/ob-octave.el (org-babel-octave-evaluate-session): Use new function.
* lisp/ob-core.el (org-babel-execute-src-block): ":results file" must
be specified in order to return a file.
(org-babel-merge-params): :file and :file-ext no longer imply :results
file.
* testing/lisp/test-ob.el (test-ob/indented-cached-org-bracket-link):
(test-ob/result-file-link-type-header-argument):
(test-ob/result-graphics-link-type-header-argument): Update tests.
Deducing the results from some other arguments is not obvious.
Moreover, it prevents users from setting, e.g., :file-ext, in a node
property, as every block would then create a file.
Reported-by: Alex Fenton <alex@pressure.to>
<http://lists.gnu.org/r/emacs-orgmode/2018-05/msg00469.html>
* lisp/ob-core.el (org-babel-open-src-block-result): Fix docstring,
refactor code.
* lisp/org.el (org-open-at-point): Refactor so as to not call
`org-babel-open-src-block-result' unconditionally.
* lisp/ob-core.el (org-babel-sha1-hash): Add optional argument to
specify context.
(org-babel-execute-src-block): Use new argument.
* lisp/ob-exp.el (org-babel-exp-src-block): Use new argument.
(org-babel-exp-results): Fix context.
Reported-by: Ken Mankoff <mankoff@gmail.com>
<http://lists.gnu.org/r/emacs-orgmode/2018-06/msg00117.html>
* lisp/ob-core.el (org-babel-execute-src-block): Handle "link" :results
format.
* doc/org-manual.org: Add document for new result format "link".
* testing/lisp/test-ob.el (test-ob/result-file-link-type-header-argument):
New test.
* lisp/ob-core.el (org-babel-params-from-properties): Do not force
using `org-babel-current-src-block-location'. Extract properties
from point.
(org-babel--noweb-reference): Remove function.
(org-babel-expand-noweb-references): Apply function removal. Small
refactoring.
* lisp/ob-lob.el (org-babel-lob-get-info): Small refactoring.
* lisp/ob-core.el (org-babel-expand-noweb-references): Get :noweb-ref
from definition instead of point of call.
* testing/lisp/test-ob.el (test-ob/noweb-expansion-1):
(test-ob/noweb-expansion-2): Merge tests. Add test.
* lisp/ob-core.el (org-babel-use-quick-and-dirty-noweb-expansion):
Remove variable.
(org-babel-expand-noweb-references): Update function.
* doc/org.texi (noweb-ref): Document new behaviour.
(Noweb reference syntax): Delete reference to removed variable.
`org-babel-use-quick-and-dirty-noweb-expansion' main use is to speed
up Noweb expansion when expanding only by name. By distinguishing
name and reference expansion, we no longer need this variable. In the
first case, the expansion is quicker anyway, and in the second case,
we most certainly need an accurate expansion.
* lisp/org.el (org-split-string): Move the function...
* lisp/org-macs.el (org-split-string): ... here. Also clarify
docstring with regards to `split-string'.
* lisp/ob-core.el (org-babel-examplify-region): Escape Org syntax
before wrapping it.
* testing/lisp/test-ob.el (test-ob/org-babel-insert-result): Add test.
Renamed from `test-ob/org-babel-insert-result--improper-lists'.
Reported-by: D M German <dmg@turingmachine.org>
* lisp/ob-core.el (org-babel-capitalize-example-region-markers): Mark
as obsolete.
(org-babel-uppercase-example-markers): New defcustom to replace defvar
org-babel-capitalize-example-region-markers.
(org-babel-examplify-region): Use new option.
Rather than moving org-babel-capitalize-example-region-markers to a
defcustom, give the option a new name that makes it clearer that all
characters, not just the first, will be in upper case.
Suggested-by: Vicente Vera <vicentemvp@gmail.com>
<http://permalink.gmane.org/gmane.emacs.orgmode/111656>
* lisp/ob-core.el (org-babel-local-file-name): Use `file-local-name'
when available.
22946702b4296c0e42e4baf6221e205b52d05cbf
Michael Albinus
Sun Nov 20 16:29:47 2016 +0100
* lisp/org.el (org-ctrl-c-ctrl-c): Handle Babel context without relying
to user hooks.
* lisp/ob-core.el (org-babel-execute-maybe):
(org-babel-hash-at-point): Do not functions in `C-c C-c' hook.
* lisp/ob-core.el (org-babel--insert-results-keyword):
(org-babel-where-is-src-block-result): Control better the number of
empty lines around results of a source block evaluation.
* testing/lisp/test-ob.el (test-ob/blocks-with-spaces): Add tests.
(test-ob/specific-colnames): Fix test.
Yasushi SHOJI
Tom Gillespie
Nicolas Goaziou
TEC
Kyle Meyer
Stefan Monnier
Mattias Engdegård
Matt Huszagh
Bastien
Ihor Radchenko
John Herrlin
stardiviner
Sebastian Miele
Juanma Barranquero
Joaquín Aguirrezabalaga
Paul Eggert
Basil L. Contovounesios
Gong Qijian
Aaron Ecay
Glenn Morris
Tim Landscheidt
Michael Albinus