Commit Graph

42 Commits

Author SHA1 Message Date
Bastien Guerry 73bb18ba37 Manually revert to the Release 7.8.04 tag. 2012-03-17 15:52:24 +01:00
Bastien Guerry 38c5045725 Fix copyright years. 2012-03-17 14:36:25 +01:00
Bastien Guerry 6e534f9c61 Manually revert back to commit e85080.
This fixes a wrong merge that should not have happened:
commit 7e903a merges the master branch into the maint branch,
while we really want to keep the maint branch a bugfix-only
branch.

This commit reverts back the maint branch to its state before
merging the master branch.  From there, we will fix remaining
problems with the maint branch (e.g. copyright issues) then
release this maint branch as Org-mode 7.8.05.
2012-03-17 14:34:01 +01:00
Eric Schulte 5cb80c7e5b apply :shebang and :padline to shell script execution
* lisp/ob-sh.el (org-babel-execute:sh): Pass all params to subroutine.
  (org-babel-sh-evaluate): Apply :shebang and :padline to shell script
  execution.
2012-03-12 13:23:53 -04:00
Bastien Guerry e44d2975ff Fix copyright (to 2012) year and Org version (to 7.8.03). 2012-01-03 18:47:01 +01:00
Bastien Guerry 58f1dbccf8 Remove the "Version" header in Org libraries (leave it in org.el).
Also remove blank lines before the ";;; org*el ends here" declarations.

Having a "Version" header forced us to update every file when releasing a
new version of Org; it also forced us to update every file when merging Org
with Emacs trunk, thus cluttering the diffs between the previously merged
version and the new one with useless information.

Glenn Morris suggested this in emacs-devel:
http://lists.gnu.org/archive/html/emacs-devel/2011-08/msg00322.html
2011-08-17 14:42:34 +02:00
Bastien Guerry 7a18799e25 Remove arch-tag at the bottom of files. 2011-08-15 20:04:38 +02:00
Bastien Guerry 904ed18bc2 Fix copyright years for elisp files in core and contrib.
Also add "This file is not part of GNU Emacs." when this is the case.
2011-08-15 15:23:11 +02:00
emacs 7340cee33a Update website to show 7.7 as current release 2011-07-28 10:33:35 +00:00
Eric Schulte c6e69cd85b ob: enforce "verbatim" as synonym for "scalar"
* lisp/ob-awk.el (org-babel-execute:awk): Use "verbatim" as synonym
  for "scalar".
* lisp/ob-sh.el (org-babel-sh-evaluate): Use "verbatim" as synonym for
  "scalar".
* lisp/ob-sqlite.el (org-babel-execute:sqlite): Use "verbatim" as
  synonym for "scalar".
* lisp/ob.el (org-babel-merge-params): Use "verbatim" as synonym for
  "scalar".
2011-07-10 09:42:54 -06:00
Bastien Guerry 9c05a7c781 Bump to version 7.6 2011-07-06 21:06:03 +02:00
Julien Barnier c227da352a Fix sh block execution in session
Hi,

When evaluating shell code blocks in org-babel, the execution seems to hang
indefinitely. The following patch is trying to fix this problem by modifying
the way shell code is send to comint and the way the end-of-evaluation
indicator is looking for.

As I am far from an emacs lisp expert and as the patch modifies the widely use
org-babel-comint-with-output function, it certainly needs some testing. I've
made some tests with shell and R code blocks, but I'm not sure it's enough.

Thanks !

Julien

Fix sh block execution in a session

* lisp/ob-sh.el (org-babel-sh-evaluate) : when sending input to comint, wait
until previous line execution is finished
* lisp/ob-comint.el (org-babel-comint-with-output) : when looking for
end-of-evaluation indicator, search forward for the indicator before searching
forward for the prompt
2011-06-06 07:17:18 -06:00
Eric Schulte 03aa327d79 sh: allow passing references through STDIN of a shell script
* lisp/ob-sh.el (ob-ref): Uses ob-ref to resolve the value of the
  :stdin header argument.
  (org-babel-execute:sh): Use the :stdin header argument.
  (org-babel-sh-var-to-sh): Split the bulk of this function off into a
  new sub-function.
  (org-babel-sh-var-to-string): New function for converting elisp
  values to strings that make sense for parsing with sh.
  (org-babel-sh-evaluate): Adding "stdin" option to session and
  external evaluation options.
2011-05-25 09:52:08 -06:00
Eric Schulte f702991626 ob-sh: fixed insertion of table data into shell variables
* lisp/ob-sh.el (org-babel-sh-var-to-sh): Fixed insertion of tabular
  data into shell variables.
2011-03-21 11:20:21 -06:00
emacs 11a10bdfe7 Update website to show 7.5 as current release 2011-03-07 14:27:39 +00:00
Eric Schulte 70d338ec46 ob-sh: customize shell quoting format with org-babel-sh-var-quote-fmt.
* lisp/ob-sh.el (org-babel-sh-var-quote-fmt): Now possible to
  customize the format string used to escape arguments to shell code
  blocks.
2011-01-18 09:23:53 -07:00
Eric Schulte 19a0ca3182 ob-sh: Better escaping of variables with spaces.
* lisp/ob-sh.el (org-babel-sh-var-to-sh): Better escaping of variables
  with spaces.
2010-12-13 13:56:03 -07:00
Carsten Dominik 7666ba421f Version number back to 7.4 2010-12-10 18:49:40 +01:00
Carsten Dominik 76a25715c9 Bump version number to 7.5 2010-12-10 18:43:10 +01:00
Eric Schulte 90bd46a6d5 ob-sh: robustification
* lisp/ob-sh.el (org-babel-sh-var-to-sh): Wrap end token of heredoc in
  single quotes which is the best practice.
  (org-babel-sh-table-or-results): Use `org-babel-script-escape' for
  more robust parsing of shell output.
2010-11-23 09:38:15 -07:00
Bastien Guerry 6630edbd0f Set version number to 7.3 2010-11-07 14:52:14 +01:00
Carsten Dominik 82af72eef7 Push version number to 7.02trans 2010-10-29 09:11:46 +02:00
Dan Davison db68b1fbf5 babel: Handle non-nested list values in shell
* ob-sh.el (org-babel-sh-var-to-sh): Ensure value has the
	structure of an Org-mode table (list of lists)

Non-nested lists can arise either by explicit assignment,
e.g. :var '(1 2), or by assigning a one-dimensional slice of a table.
2010-10-21 13:06:56 +01:00
Dan Davison 369cf54146 babel:removing calls to ob-process-params, and updating use of results
* lisp/ob-C.el (org-babel-C-execute): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-R.el (org-babel-execute:R): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
      (org-babel-R-variable-assignments): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-asymptote.el (org-babel-execute:asymptote): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-clojure.el (org-babel-execute:clojure): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-dot.el (org-babel-execute:dot): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-emacs-lisp.el (org-babel-expand-body:emacs-lisp): removing
      call to org-babel-process-params which should no longer be called
      from within a language file
      (org-babel-execute:emacs-lisp): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-haskell.el (org-babel-execute:haskell): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-js.el (org-babel-execute:js): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-lisp.el (org-babel-execute:lisp): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-ocaml.el (org-babel-execute:ocaml): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-octave.el (org-babel-execute:octave): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-perl.el (org-babel-execute:perl): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-python.el (org-babel-execute:python): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-ruby.el (org-babel-execute:ruby): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-scheme.el (org-babel-execute:scheme): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-screen.el (org-babel-execute:screen): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
      (org-babel-prep-session:screen): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-sh.el (org-babel-execute:sh): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * lisp/ob-sql.el (org-babel-execute:sql): removing call to
      org-babel-process-params which should no longer be called from
      within a language file
    * ob-haskell.el (org-babel-execute:haskell): Remove reference
      to processed params
    * ob-clojure.el (org-babel-execute:clojure): Remove reference
      to processed params
    * ob-R.el (org-babel-execute:R): Remove reference to processed
      params
2010-10-21 13:06:54 +01:00
Dan Davison 07c84b293c babel: shell: New variable assignment and expansion scheme
* ob-sh.el (org-babel-execute:sh): Use generic expansion
	function
	(org-babel-expand-body:sh): Delete function
	(org-babel-prep-session:sh): Change name of called function
	(org-babel-variable-assignments:sh): Change function name
2010-10-21 13:06:03 +01:00
Eric Schulte 2ddcf9e255 removing obsoleted optional third argument from org-babel-expand-body:LANG
* lisp/ob-C.el (org-babel-expand-body:c++): removing obsoleted
  optional third argument
  (org-babel-expand-body:c++): removing obsoleted optional third
  argument
  (org-babel-C-expand): removing obsoleted optional third argument
* lisp/ob-R.el:
  (org-babel-expand-body:R): removing obsoleted optional third
  argument
  (org-babel-execute:R): removing obsoleted optional third argument
  (org-babel-R-variable-assignments): removing obsoleted optional
  third argument
* lisp/ob-asymptote.el:
  (org-babel-expand-body:asymptote): removing obsoleted optional third
  argument
  (org-babel-execute:asymptote): removing obsoleted optional third
  argument
* lisp/ob-clojure.el:
  (org-babel-expand-body:clojure): removing obsoleted optional third
  argument
  (org-babel-execute:clojure): removing obsoleted optional third
  argument
* lisp/ob-css.el:
  (org-babel-expand-body:css): removing obsoleted optional third
  argument
* lisp/ob-ditaa.el:
  (org-babel-expand-body:ditaa): removing obsoleted optional third
  argument
* lisp/ob-dot.el:
  (org-babel-expand-body:dot): removing obsoleted optional third
  argument
  (org-babel-execute:dot): removing obsoleted optional third argument
* lisp/ob-emacs-lisp.el:
  (org-babel-expand-body:emacs-lisp): removing obsoleted optional
  third argument
  (org-babel-execute:emacs-lisp): removing obsoleted optional third
  argument
* lisp/ob-gnuplot.el:
  (org-babel-expand-body:gnuplot): removing obsoleted optional third
  argument
* lisp/ob-haskell.el:
  (org-babel-expand-body:haskell): removing obsoleted optional third
  argument
  (org-babel-execute:haskell): removing obsoleted optional third
  argument
  (org-babel-load-session:haskell): removing obsoleted optional third
  (org-babel-prep-session:haskell): removing obsoleted optional third
* lisp/ob-js.el:
  (org-babel-expand-body:js): removing obsoleted optional third
  argument
  (org-babel-execute:js): removing obsoleted optional third argument
* lisp/ob-latex.el:
  (org-babel-expand-body:latex): removing obsoleted optional third
  argument
* lisp/ob-lisp.el:
  (org-babel-expand-body:lisp): removing obsoleted optional third
  argument
  (org-babel-execute:lisp): removing obsoleted optional third argument
* lisp/ob-mscgen.el:
  (org-babel-expand-body:mscgen): removing obsoleted optional third
  argument
* lisp/ob-ocaml.el:
  (org-babel-expand-body:ocaml): removing obsoleted optional third
  argument
  (org-babel-execute:ocaml): removing obsoleted optional third
  argument
* lisp/ob-octave.el:
  (org-babel-expand-body:matlab): removing obsoleted optional third
  argument
  (org-babel-expand-body:octave): removing obsoleted optional third
  argument
  (org-babel-execute:octave): removing obsoleted optional third
  argument
  (org-babel-octave-variable-assignments): removing obsoleted optional
  third
* lisp/ob-org.el:
  (org-babel-expand-body:org): removing obsoleted optional third
  argument
* lisp/ob-perl.el:
  (org-babel-expand-body:perl): removing obsoleted optional third
  argument
  (org-babel-execute:perl): removing obsoleted optional third argument
* lisp/ob-plantuml.el:
  (org-babel-expand-body:plantuml): removing obsoleted optional third
  argument
* lisp/ob-python.el:
  (org-babel-expand-body:python): removing obsoleted optional third
  argument
  (org-babel-execute:python): removing obsoleted optional third
  argument
  (org-babel-python-variable-assignments): removing obsoleted optional
  third
* lisp/ob-ruby.el:
  (org-babel-expand-body:ruby): removing obsoleted optional third
  argument
  (org-babel-execute:ruby): removing obsoleted optional third argument
* lisp/ob-sass.el:
  (org-babel-expand-body:sass): removing obsoleted optional third
  argument
* lisp/ob-scheme.el:
  (org-babel-expand-body:scheme): removing obsoleted optional third
  argument
  (org-babel-execute:scheme): removing obsoleted optional third
  argument
* lisp/ob-screen.el:
  (org-babel-expand-body:screen): removing obsoleted optional third
  argument
* lisp/ob-sh.el:
  (org-babel-expand-body:sh): removing obsoleted optional third
  argument
  (org-babel-execute:sh): removing obsoleted optional third argument
  (org-babel-sh-variable-assignments): removing obsoleted optional
  third
* lisp/ob-sql.el:
  (org-babel-expand-body:sql): removing obsoleted optional third
  argument
* lisp/ob-sqlite.el:
  (org-babel-expand-body:sqlite): removing obsoleted optional third
  argument
  (org-babel-execute:sqlite): removing obsoleted optional third
  argument
* lisp/ob.el:
  (org-babel-expand-body:generic): removing obsoleted optional third
  argument
2010-10-21 13:06:00 +01:00
Eric Schulte f16c46c856 babel: purging all calls to removed org-babel-ref-variables
* lisp/ob-clojure.el (org-babel-prep-session:clojure): purging all
  calls to removed org-babel-ref-variables

* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): purging all
  calls to removed org-babel-ref-variables

* lisp/ob-ruby.el (org-babel-prep-session:ruby): purging all calls to
  removed org-babel-ref-variables

* lisp/ob-scheme.el (org-babel-prep-session:scheme): purging all calls
  to removed org-babel-ref-variables

* lisp/ob-sqlite.el (org-babel-expand-body:sqlite): purging all calls
  to removed org-babel-ref-variables

  (org-babel-execute:sqlite): purging all calls to removed
  org-babel-ref-variables
2010-10-21 13:06:00 +01:00
Dan Davison 07b45a64f2 Missing parenthesis 2010-10-21 13:05:58 +01:00
Dan Davison a06ea76c53 babel: Provide missing docstrings
* ob-sh.el (org-babel-sh-variable-assignments):
	Provide missing docstring
	* ob-python.el (org-babel-python-variable-assignments):
	Provide missing docstring
2010-10-21 13:05:58 +01:00
Dan Davison 8e151c066e babel: sh: Fix variable assignments made by `org-babel-prep-session:sh'
* ob-sh.el (org-babel-expand-body:sh): Refactor: break variable
    assignment part out into a separate function
    (org-babel-sh-variable-assignments): New function constructing
    list of variable assignment statements
    (org-babel-prep-session:sh): Use new function
    `org-babel-sh-variable-assignments' instead of previous
    (incorrect) variable assignment code.
2010-10-21 13:05:58 +01:00
Eric Schulte c9b017632e ob-sh: no longer fails on empty results
* lisp/ob-sh.el (org-babel-sh-evaluate): no longer assumes that
  results are non-nil
2010-10-15 09:25:33 -06:00
Eric Schulte b04265eabc ob-sh: don't insert extra newlines in the beginning of the body
* lisp/ob-sh.el (org-babel-expand-body:sh): don't insert extra
  newlines in expanded shell bodies
2010-10-14 08:10:23 -06:00
Dan Davison 757312dde3 babel: Remove unused temporary file variable
* ob-sh.el (org-babel-sh-evaluate): Remove unused temporary
	file variable
2010-09-22 22:10:13 +01:00
Eric Schulte 7b00073f2d Babel now cleans up any temporary files created using org-babel-temp-file
* lisp/ob.el (org-babel-temporary-directory): variable to hold the
  value of the Babel temporary directory

  (org-babel-temp-file): replacement for make-temp-file with cleanup
  on exit of Emacs

  (org-babel-remove-temporary-directory): cleanup function run on exit
  of Emacs

  (kill-emacs-hook): now includes babel cleanup function

* lisp/ob-C.el (org-babel-C-execute): using org-babel-temp-file
  instead of make-temp-file

* lisp/ob-R.el (org-babel-R-assign-elisp): using `org-babel-temp-file'
  instead of `make-temp-file'

  (org-babel-R-evaluate-external-process): using `org-babel-temp-file'
  instead of `make-temp-file'

  (org-babel-R-evaluate-session): using `org-babel-temp-file' instead of
  `make-temp-file'

* lisp/ob-asymptote.el (org-babel-execute:asymptote): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-clojure.el (org-babel-clojure-evaluate-external-process):
  using `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-ditaa.el (org-babel-execute:ditaa): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-dot.el (org-babel-execute:dot): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-gnuplot.el (org-babel-gnuplot-process-vars): using
  `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-execute:gnuplot): using `org-babel-temp-file' instead of
  `make-temp-file'

* lisp/ob-haskell.el (org-babel-load-session:haskell): using
  `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-haskell-export-to-lhs): using `org-babel-temp-file' instead
  of `make-temp-file'

* lisp/ob-latex.el (org-babel-execute:latex): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-ledger.el (org-babel-execute:ledger): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-lisp.el (org-babel-execute:lisp): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-octave.el (org-babel-octave-evaluate-external-process):
  using `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-octave-evaluate-session): using `org-babel-temp-file'
  instead of `make-temp-file'

  (org-babel-octave-import-elisp-from-file): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-perl.el (org-babel-perl-evaluate): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-python.el (org-babel-python-evaluate): using
  `org-babel-temp-file' instead of `make-temp-file'
  using `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-ruby.el (org-babel-ruby-evaluate): using
  `org-babel-temp-file' instead of `make-temp-file'
  using `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-sass.el (org-babel-execute:sass): using
  `org-babel-temp-file' instead of `make-temp-file'

* lisp/ob-sh.el (org-babel-sh-evaluate): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-sql.el (org-babel-execute:sql): using `org-babel-temp-file'
  instead of `make-temp-file'

* lisp/ob-sqlite.el (org-babel-execute:sqlite): using
  `org-babel-temp-file' instead of `make-temp-file'

  (org-babel-sqlite-expand-vars): using `org-babel-temp-file' instead of
   `make-temp-file'
2010-08-25 14:47:47 -06:00
Carsten Dominik 6268cceec3 Mention release 7.01 on the website, push release number to 7.01trans 2010-07-19 08:33:24 +02:00
Eric Schulte 57bfa1989d ob-sh: can now handle variable strings which contain newlines
* lisp/ob-sh.el (org-babel-sh-var-to-sh): shell can now handle input
  strings which contain newlines
2010-07-14 11:42:06 -07:00
Tom Dye 272aefce83 Finished editing Babel docstrings 2010-07-13 16:20:08 -07:00
Eric Schulte c53fc7d246 babel: consolidate execution messaging into ob.el
* lisp/ob.el (org-babel-execute-src-block): consolidate execution
  messaging into ob.el rather than spread out amongst all the language
  files
2010-07-12 22:26:25 -07:00
Eric Schulte 33b19178fc ob-sh: bug fix, return the results *not* the contents of the user's buffer
Thanks to Bernt Hansen for pointing this out

* lisp/ob-sh.el (org-babel-sh-evaluate): return the results *not* the
  contents of the user's buffer
2010-07-06 19:53:34 -07:00
Eric Schulte 3416a0e323 babel: clean compile 2010-07-05 11:14:51 -07:00
Eric Schulte 6c2e35003f babel: all languages compiling cleanly (but R has a small problem)
For some reason ob-R refuses to compile when it requires ob-comint.

  When (require 'ob-comint) is not included in  ob-R.el everything
  compiles without error, but warnings are thrown because the
  arguments to a macro defined in ob-comint are mis-interpreted as
  functions.

  When (require 'ob-comint) is added to ob-R.el then it throws errors
  complaining that the last argument to a function is nil and should
  be a string.  I don't understand this error at all and can't fix it.
2010-07-05 11:14:50 -07:00
Eric Schulte d7b7025eac flattening out lisp directory structure
all babel and babel/langs files now live in the base of the lisp directory.
2010-07-05 11:14:49 -07:00