* lisp/ob-julia.el: Use lexical-binding.
(ess-eval-visibly-p): Declare as dynamically scoped.
(org-babel-execute:julia, org-babel-julia-assign-elisp)
(org-babel-julia-evaluate, org-babel-julia-evaluate-session):
Remove unused references to `colnames-p' and `rownames-p'.
Thanks to Pedro Bruel for reviewing this patch.
* lisp/org-macs.el (org-do-remove-indentation): Add optional argument
to skip the first line.
* lisp/org-src.el (org-src--coordinates): Fix coordinates for inline
LaTeX fragments.
(org-src--contents-for-write-back): Do not indent first line for LaTeX
fragments.
(org-src--edit-element): Compute block-indentation according to parent
for LaTeX fragments. Skip first line when removing common indentation
for LaTeX fragments.
* lisp/ob-core.el (org-babel-eval-headers): Fix elements ordering.
(org-babel-merge-params): Tiny refactoring.
This fixes the test `test-ob-lob/call-with-header-arguments' that
fails after 9f1507bdd.
* doc/org-manual.org (Verse blocks in LaTeX export): The previous
version of Shakespeare's sonnet is replaced by the version included in
Wikipedia (Shakespeare, William. Duncan-Jones, Katherine. Shakespeare’s
Sonnets. Bloomsbury Arden 2010. p. 113).
* etc/ORG-NEWS (Support verse blocks in LaTeX export): The last
sentence is superfluous. There is no explanation below.
* lisp/ob-core.el (org-babel-default-header-args): Document ability to
use closures.
(org-babel-eval-headers): New function to generate header arguments,
which adds the ability to evaluate closures during source block
execution or export.
(org-babel-merge-params): Only evaluate closures when we have our
final list of headers.
* lisp/org-macs.el (org-plist-delete-all): New function.
* lisp/ox-publish.el (org-publish-file): Add
`org-html-publish-to-html' as the default publishing function.
* testing/lisp/test-ox-publish.el (org-test-publish): Use
`org-plist-delete-all' to remove properties from the plist.
Reported-by: Christopher W. Ryan
See <https://list.orgmode.org/CAELBRWLgV-s6SGX=cevtN7iW8htwiLezR469T-cGMWE_6iX1+A@mail.gmail.com>
* lisp/org-agenda.el (org-agenda-highlight-todo):
(org-agenda-set-mode-name):
* lisp/org-table.el (org-table-eval-formula): Avoid space before tab in
indent.
This is in preparation for syncing with the Emacs repo.
The merge in e64d5bcc6 (Merge branch 'bugfix', 2021-09-25) left
several unresolved conflicts. One was cleaned up later in db67c7e92
(Move some ob-*el files to the new org-contrib repo, 2021-09-26).
Take care of the other ones.
* lisp/ob-R.el (ob-session-async-org-babel-R-evaluate-session):
Make sure that `ess-inject-source' is set to the default
'function-and-buffer before running `ess-eval-buffer'. Return
`ess-inject-source' to its user-specified state afterwards.
* lisp/ob-R.el (ob-session-async-org-babel-R-evaluate-session): Make
sure that `ess-eval-visibly' is nil before evaluating the temporary
buffer, but return ess-eval-visibly to it's original state afterwards.
* lisp/ob-R.el (ob-session-async-R-indicator): Add constant
representing a prefix R to identity session.
(ob-session-async-org-babel-R-evaluate-session): New function to
evaluate R src block asynchrously.
(ob-session-async-R-value-callback): New function that calls back
the result of the asynchronous evaluation.
(org-babel-R-evaluate): Add `async' parameter and call
`ob-session-async-org-babel-R-evaluate-session' if `async'
parameter is present.
(org-babel-execute:R): Call `org-babel-comint-use-async' to check
if async is among `params' and add async parameter to
`org-babel-R-evaluate'.
* testing/lisp/test-ob-R.el: Add 7 more tests for async
evaluations, also taken from the `ob-session-async' package.
This is almost a carbon copy of Jack Kamm's `ob-session-async'.
The original source code can be found
https://github.com/jackkamm/ob-session-async.
Please refer to the following thread to trace back the discussion
on async evaluation in R:
https://list.orgmode.org/87eed9g9p6.fsf@gmail.com/
* lisp/ox-org.el (org-org-identity, org-org-template): As it has
previously been clarified on the mailing list that upper-case keywords
are only intended for the manual[1], an Org export of an Org file should
use lower-case keywords.
[1]: https://list.orgmode.org/87tuuw3n15.fsf@nicolasgoaziou.fr/
* lisp/oc-csl.el (org-cite-csl--create-structure-params): Introduce this new
function to map the extended list of supported citation styles and variants to
the corresponding citeproc-el citation structure creation parameters.
(org-cite-csl--no-affixes-p, org-cite-csl--capitalize-p,
org-cite-csl--no-author-p): Remove them since their functionality is provided
now by `org-cite-csl--create-structure-params'.
(org-cite-csl--parse-reference): Don't generate `suppress-author' cite
information as that is treated now by citeproc-el as a citation style.
(org-cite-csl--create-structure): Use `org-cite-csl--create-structure-params' to
generate style-dependent citation structure parameters.
* lisp/org.el (org-latex-default-packages-alist): Remove grffile and
textcomp from the list of default LaTeX packages to load, as they've
been obsolete for quite a few years now.
* etc/ORG-NEWS: Announce the removal of grffile and textcomp from
`org-latex-default-packages-alist'.
testing/lisp/test-org-protocol.el
(test-org-protocol/org-protocol-store-link)
(test-org-protocol/org-protocol-capture): Cases to check that "+" is
decoded to space in query parameters (new style of URIs) but preserved
in path components (old style of org-protocol links).
* lisp/org-protocol.el (org-protocol-convert-query-to-plist):
Replace "+" chars by spaces before passing parameter string
to decoder. Allow making org-protocol URIs with help of URLSearchParams
JavaScript class.
* lisp/org-protocol.el doc/org-manual.org etc/ORG-NEWS: Add examples
demonstrating new opportunity for browser bookmarklets.
Make parsing of URI parameters a bit closer to URL standard
https://url.spec.whatwg.org/#urlencoded-parsing
* lisp/org.el (org-fill-element): `mark-whole-buffer' introduced in
7b85a64da is only for interactive use and causes compiler warning.
Replace it using noninteractive commands.
Bastien
Sébastien Miquel
Ihor Radchenko
Jonathan Gregory
Juan Manuel Macías
Matt Huszagh
Yasushi SHOJI
András Simonyi
Nicholas Vollmer
Kyle Meyer
Jeremie Juste
TEC
Bruce D'Arcus
Max Nikulin