* lisp/ob-core.el (org-babel-use-quick-and-dirty-noweb-expansion):
Remove variable.
(org-babel-expand-noweb-references): Update function.
* doc/org.texi (noweb-ref): Document new behaviour.
(Noweb reference syntax): Delete reference to removed variable.
`org-babel-use-quick-and-dirty-noweb-expansion' main use is to speed
up Noweb expansion when expanding only by name. By distinguishing
name and reference expansion, we no longer need this variable. In the
first case, the expansion is quicker anyway, and in the second case,
we most certainly need an accurate expansion.
* lisp/org.el (org-split-string): Move the function...
* lisp/org-macs.el (org-split-string): ... here. Also clarify
docstring with regards to `split-string'.
* lisp/ob-core.el (org-babel-examplify-region): Escape Org syntax
before wrapping it.
* testing/lisp/test-ob.el (test-ob/org-babel-insert-result): Add test.
Renamed from `test-ob/org-babel-insert-result--improper-lists'.
Reported-by: D M German <dmg@turingmachine.org>
* lisp/ob-core.el (org-babel-capitalize-example-region-markers): Mark
as obsolete.
(org-babel-uppercase-example-markers): New defcustom to replace defvar
org-babel-capitalize-example-region-markers.
(org-babel-examplify-region): Use new option.
Rather than moving org-babel-capitalize-example-region-markers to a
defcustom, give the option a new name that makes it clearer that all
characters, not just the first, will be in upper case.
Suggested-by: Vicente Vera <vicentemvp@gmail.com>
<http://permalink.gmane.org/gmane.emacs.orgmode/111656>
* lisp/ob-core.el (org-babel-local-file-name): Use `file-local-name'
when available.
22946702b4296c0e42e4baf6221e205b52d05cbf
Michael Albinus
Sun Nov 20 16:29:47 2016 +0100
* lisp/org.el (org-ctrl-c-ctrl-c): Handle Babel context without relying
to user hooks.
* lisp/ob-core.el (org-babel-execute-maybe):
(org-babel-hash-at-point): Do not functions in `C-c C-c' hook.
* lisp/ob-core.el (org-babel--insert-results-keyword):
(org-babel-where-is-src-block-result): Control better the number of
empty lines around results of a source block evaluation.
* testing/lisp/test-ob.el (test-ob/blocks-with-spaces): Add tests.
(test-ob/specific-colnames): Fix test.
* lisp/ob-core.el (org-babel-local-file-name): Use `file-remote-p'.
Add `make-nearby-temp-file' and `temporary-file-directory'
2c0506173d92dd9d6de409a045668c6b5cf1fcef
Michael Albinus
Sun Aug 7 13:57:23 2016 +0200
* lisp/ob-core.el (org-babel--string-to-number): Rename and refactor
from `org-babel-number-p'.
(org-babel-read-element, org-babel-read): Apply renaming.
The old name implies that the function is a predicate, but it’s actually
a type conversion function.
* lisp/ob-core.el (org-babel-strip-quotes): New function.
* lisp/ob-haskell.el (org-babel-haskell-read-string): Remove.
(org-babel-execute:haskell): Use new function.
* lisp/ob-octave.el (org-babel-octave-read-string): Remove.
(org-babel-octave-evaluate-session): Use new function.
* lisp/ob-ruby.el (org-babel-ruby-read-string): Remove.
* lisp/org-src.el (org-src-coderef-format): New function
(org-src-coderef-regexp): Change signature.
* lisp/ob-core.el (org-babel--normalize-body):
* lisp/ox.el (org-export-unravel-code): Use new functions.
* testing/lisp/test-org-src.el (test-org-src/coderef-format): New test.
* lisp/ob-core.el (org-babel--normalize-body): New function.
(org-babel-get-src-block-info): Use new function.
* lisp/org-src.el (org-src-coderef-regexp): New function.
* lisp/ox.el (org-export-unravel-code): Use new function.
* testing/lisp/test-ob.el (test-ob/evaluate-body-with-coderefs): New
test.
* lisp/ob-core.el (org-babel-goto-named-src-block): The user prompt
(i.e. `initial-input' arg of `completing-read') will be the name of
the results block, noweb reference, call reference, or symbol if
point is in such.
* testing/lisp/test-ob.el (test-ob/goto-named-src-block): Simulate
interactive use of `org-babel-goto-named-src-block'.
* lisp/org.el (org-export-backend-options): Add back removed
declare-function call.
* lisp/ob-awk.el (orgtbl-to-generic):
* lisp/ob-core.el (orgtbl-to-generic):
* lisp/ob-gnuplot.el (orgtbl-to-generic): Remove BACKEND argument from
declare-function calls.
The last backport added this argument to match orgtbl-to-generic's
signature in Emacs's version of Org, but the BACKEND argument to
orgtbl-to-generic was later removed in 9209aa3 (org-table: Use "ox.el"
internally for radio tables, 2014-08-24).
* lisp/ob-core.el (org-babel-where-is-src-block-result): Return nil when
anonymous results would be located outside of the container of the
source block.
* testing/lisp/test-ob.el (test-ob/where-is-src-block-result): Add test.
Reported-by: Dominik Schrempf <dominik.schrempf@gmail.com>
<http://permalink.gmane.org/gmane.emacs.orgmode/105309>
* lisp/ob-core.el (org-babel-execute-src-block): Simplify.
(org-babel-tramp-handle-call-process-region): Remove.
Commit 57104f9f changed an org-flet to a let, rendering the whole
apparatus of modifying call-process-region inoperative. Supposedly this
was put in place to work around a bug in
tramp-handle-call-process-region, which was removed from tramp in
2012 (after being renamed to tramp-sh-call-process-region). *shrug*
This commit just removes the whole thing.
It also no longer consults ‘org-src-lang-modes’, following on from
commit 6287416.
* lisp/ob-core.el (org-babel-make-language-alias): New function.
* lisp/ob-emacs-lisp.el: Use it.
Previously this was accomplished via org-src-lang-modes, but that is a
poor solution, as it conflates the remapping of language mode names with
the creation of aliases.
* lisp/ob-core.el (org-babel-insert-result): Delegate removal of old
inline results to...
(org-babel-where-is-src-block-result): ... this.
Now `org-babel-where-is-src-block-result' behaves in a symmetric way for
inline an non-inline source blocks.
* lisp/ob-core.el (org-babel-where-is-src-block-result): Find results
for inline src-blocks or inline babel call not located on a subsequent
line, e.g., because of filling.
(org-babel-insert-result): When inline results exist, replace them
in-place.
(org-babel-remove-inline-result): Also remove results not located on the
same line as the source code.
(org-babel-examplify-region): Change signature. Properly mark inline
results at the beginning of a line.
* testing/lisp/test-ob.el (test-ob/inline-src_blk-default-results-replace-line-1):
Add tests.
* lisp/ob-lob.el (org-babel-block-lob-one-liner-regexp):
(org-babel-inline-lob-one-liner-regexp):
(org-babel-lob-one-line-regexp):
* lisp/ob-core.el (org-babel-inline-src-block-regexp): Remove variables.
(org-babel-map-inline-src-blocks):
(org-babel-map-call-lines):
(org-babel-map-executables):
(org-babel-execute-buffer):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
(org-babel-exp-results): Do not use removed variables.
Babel now mostly uses the parser to handle Babel code. Regexps are not
needed anymore.
* lisp/ob-core.el (org-babel-get-inline-src-block-matches): Remove
function.
(org-babel-when-in-src-block):
(org-babel-insert-result): Do not use removed function.
(org-babel-remove-inline-result): Add an optional argument for a tiny
speed-up.
* testing/examples/babel.org:
* testing/lisp/test-ob.el (test-ob/inline-src_blk-default-results-replace-line-1):
Remove needless tests.
* lisp/ob-core.el (org-babel-get-src-block-info): Rewrite function.
Change signature.
(org-babel-parse-src-block-match):
(org-babel-parse-inline-src-block-match): Remove functions.
(org-babel-execute-src-block): Remove useless function call.
* lisp/ob-exp.el (org-babel-exp-process-buffer): Make use of signature
change.
(org-babel-exp-results): Use new return value from
`org-babel-get-src-block-info'. Tiny refactoring.
* testing/lisp/test-ob.el (test-ob/nested-code-block): Fix test.
* contrib/lisp/org-eldoc.el (org-eldoc-get-src-lang): Use parser instead
of removed function.
* testing/examples/babel.org: Fix test environment.
* lisp/ob-core.el (org-babel--insert-results-keyword):
(org-babel--clear-results-maybe): New functions.
(org-babel-where-is-src-block-result): Rewrite function. Improve
accuracy, in particular when RESULTS is not the closest affiliated
keyword from the results.
* testing/lisp/test-ob.el (test-ob/where-is-src-block-result): New test.
* lisp/ob-core.el (org-babel-find-named-result): Prevent false positive
using parser.
(org-babel-current-result-hash):
(org-babel-set-current-result-hash):
(org-babel-where-is-src-block-result): Do not rely on some undocumented
match data.
* testing/lisp/test-ob.el (test-ob/find-name-result): New test.
* lisp/ob-core.el (org-babel-get-src-block-info): Do not return block
indentation.
(org-babel-parse-src-block-match): Ignore block indentation.
(org-babel-demarcate-block): Find appropriate indentation instead of
using the one from the original block.
(org-babel-where-is-src-block-result): Change signature. Indent
according to context instead of relying on indentation from original
block.
(org-babel-insert-result): Change signature.
(org-babel-check-confirm-evaluate):
(org-babel-execute-src-block):
(org-babel-insert-header-arg): Apply change to src-block info.
* lisp/ob-exp.el (org-babel-exp-process-buffer): Apply change to
src-block info.
* lisp/ob-lob.el (org-babel-lob-get-info): Do not return indentation.
(org-babel-lob-execute): Apply change to lob-info.
Indentation from source block is often wrong at the block and its
results may not be in the same context.
* lisp/ob-core.el (org-babel-goto-named-src-block): Use parser instead
of `org-babel-lob-one-liner-regexp'.
* lisp/ob-lob.el (org-babel-lob-execute-maybe): Ignore spurious check,
now handled by the parser.
(org-babel-lob-get-info): Fully use parser. Accept a new optional
argument to avoid parsing the same location twice.
* lisp/ob-exp.el (org-babel-exp-process-buffer):
* lisp/ob-ref.el (org-babel-ref-resolve): Optimize call to
`org-babel-lob-get-info'.
* lisp/ob-core.el (org-babel-update-block-body): Correctly handle block
indentation.
(org-babel-where-is-src-block-head): Accept an optional argument in
order to avoid parsing twice the same element.
* testing/lisp/test-ob.el (org-test-ob/update-block-body): New test.
* lisp/ob-core.el (org-babel-check-confirm-evaluate)
(org-babel-map-src-blocks): Don't emit warnings if added vars are not used.
(*this*): Declare as dyn-bound.
(org-babel-expand-src-block, org-babel-load-in-session)
(org-babel-switch-to-session-with-code, org-babel-get-rownames):
Mark unused args.
(org-babel-combine-header-arg-lists): Remove unused var `args'.
* lisp/org-src.el (org-inhibit-startup):
Declare as dyn-bound.
lisp/org: Fix some compiler warnings
1203e8aecb7f49621af52cc13bc0e4427545dd4f
Stefan Monnier
Mon Jan 25 10:11:31 2016 -0500
* lisp/org-element.el (org-element-export-block-parser):
(org-element--current-element): Use new syntax for export blocks.
(org-element-block-name-alist): Remove.
* lisp/ox.el (org-export-register-backend):
(org-export-define-derived-backend): Remove :export-block keyword from
back-end's definition.
(org-export-expand-include-keyword): Use new syntax for include
keywords.
* lisp/ox-ascii.el (ascii):
* lisp/ox-beamer.el (beamer):
* lisp/ox-html.el (html):
* lisp/ox-latex.el (latex):
(org-latex-prefer-user-labels):
* lisp/ox-man.el (man):
* lisp/ox-md.el (md):
* lisp/ox-odt.el (odt):
* lisp/ox-texinfo.el (texinfo): Propagate changes to "ox.el".
* lisp/ob-core.el (org-babel-insert-result):
* lisp/ob-haskell.el (org-babel-haskell-export-to-lhs): Use new syntax.
* lisp/org.el (org-structure-template-alist): Use new syntax.
(org-protecting-blocks): Add "export" to protected blocks. Remove
back-ends blocks, which are now special blocks.
(org-fontify-meta-lines-and-blocks-1): Fontify correctly new blocks.
* lisp/org-footnote.el (org-footnote-forbidden-blocks):
* lisp/org-list.el (org-list-forbidden-blocks): Add "export" to
forbidden blocks. Remove back-ends blocks, which are now special
blocks.
* contrib/lisp/ox-extra.el: Update comments.
* testing/lisp/test-org-element.el (test-org-element/export-block-parser):
(test-org-element/export-block-interpreter):
* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--results-html):
(test-ob/org-babel-remove-result--results-latex):
* testing/lisp/test-ox.el (test-org-export/expand-include): Update tests.
Export blocks are explicitly marked as such at the syntax level to
disambiguate their parsing from special blocks. The new syntax is
#+BEGIN_EXPORT backend
...
#+END_EXPORT
instead of
#+BEGIN_backend
...
#+END_backend
As a consequence, =INCLUDE= keywords syntax is modified, e.g.,
#+INCLUDE: "file.org" HTML
becomes
#+INCLUDE: "file.org" export html
* lisp/ob-core.el (org-babel-check-confirm-evaluate): Convert from macro
to function.
(org-babel-check-evaluate):
(org-babel-confirm-evaluate): Adapt to above change. Convert from
defsubst to defun.
* testing/lisp/test-ob.el (ob/check-eval) New test.
(org-test-babel-confirm-evaluate): New function supporting it.
* lisp/ob-core.el (org-babel-read-element): New function.
* lisp/ob-ref.el (org-babel-ref-resolve): Use new function. Refactor
code.
(org-babel-ref-at-ref-p): Remove function.
* testing/lisp/test-ob.el (test-ob/ignore-reference-in-commented-headings):
New test.
* testing/lisp/test-ob.el (test-ob/resolve-code-blocks-before-data-blocks):
Remove test
The second test is removed because names are expected to be unique.
There is no order to expect when more than one uses the same name.
Reported-by: myq <myqlarson@gmail.com>
<http://permalink.gmane.org/gmane.emacs.orgmode/102464>
Protect apostrophes not covered by the last backport. Convert
expressions like '(...) to \\='(...) and symbols written as 'name to
`name'. (In addition to ensuring the correct display, the latter also
improves consistency with many Org docstrings.)
If these aren't protected, Emacs 25 may display them as curved quotes in
the help buffer, depending on the value of text-quoting-style.
These changes are the combination of the commits below (in order
applied). Unlike other backports, these are applied in one commit
because they are closely related and because some of the later commits
reverse changes in earlier commits. Changes to message and help quote
display for Emacs 25 seem to be here to stay. The quote protections are
required to ensure grave accents and apostrophes are displayed as
intended in Emacs 25, and they should not affect earlier versions.
Quoting fixes in lisp/org
6cd2629bd1b3ce77d29ac28e29237c94a4197116
Paul Eggert
Mon Aug 31 00:29:40 2015 -0700
More-conservative ‘format’ quote restyling
fbb5531fa11d13854b274d28ccd329c9b6652cfc
Paul Eggert
Sun Aug 23 22:39:06 2015 -0700
Prefer directed to neutral quotes
875a5d0ead827d3da32ecbd30e739a29f07bbc87
Paul Eggert
Mon Aug 24 23:57:25 2015 -0700
Escape ` and ' in doc
19532d147b431a4fe34f088d6de07891c48e2c5c
Paul Eggert
Tue Sep 1 18:23:21 2015 -0700
Fix some more docstring etc. quoting problems
26bd978d87dfbf9baa115cd961a67d42b416c4bf
Paul Eggert
Thu Sep 3 15:32:54 2015 -0700
Go back to grave quoting in source-code docstrings etc.
6afef3f6ca2f3009c722b84e249903b7f807b044
Paul Eggert
Mon Sep 7 16:09:27 2015 -0700
* lisp/ob-core.el (org-babel-parse-src-block-match): Compute indentation
taking into consideration tab width.
(org-babel-where-is-src-block-result): Do not assume indentation
consists of white space characters only.
* testing/lisp/test-ob.el (test-ob/preserve-results-indentation): Add
test.
Reported-by: Jarmo Hurri <jarmo.hurri@iki.fi>
<http://permalink.gmane.org/gmane.emacs.orgmode/100403>
* lisp/ob-core.el (org-babel-check-evaluate)
(org-babel-confirm-evaluate):
* lisp/ob-fortran.el (org-babel-fortran-var-to-fortran):
* lisp/ox-latex.el (org-latex-compile):
* lisp/ox-man.el (org-man-compile):
* lisp/ox-odt.el (org-odt-template):
* lisp/ox-texinfo.el (org-texinfo-compile):
Change (message (format ...)) to (message ...), and likewise
for ‘error’. This lessens the probability of confusion when the
output of ‘format’ contains ‘%’.
Fix some confusion with ‘format’
0c856a2c459016f1f9cce173f5b2b49be36e3452
Paul Eggert
Wed Aug 5 19:07:28 2015 -0700
* ob-core (org-babel-result-cond): Add "file" as a param that returns
a scalar result.
When writing the result to file we do not need to first convert the
data to a table since it is just converted back when
org-babel-execute-src-block serializes the result to file.
Fix a problem where a source block would return nil oif the result was
cached and it was indented.
* lisp/ob-core.el (org-babel-execute-src-block): Move point to the the
first character of the result instead of the beginning of the line.
* testing/lisp/test-ob.el
(test-org-babel/indented-cached-org-bracket-link): Added test to
to see if the indented cached result returns what it should return.
* lisp/ob-core.el (org-babel-insert-result): Improper lists are
removeable.
When a list cannot be turned into a table, return it in a fixed-width
area so that it can be removed.
Suggested-by: Charles C. Berry <ccberry@ucsd.edu>
<http://permalink.gmane.org/gmane.emacs.orgmode/95430>
* lisp/ob-core.el (org-babel-insert-result): Fix output when result is
an improper list, which cannot be turned into a table.
* testing/lisp/test-ob.el (test-ob/org-babel-insert-result--improper-lists):
New test.
Reported-by: Daniele Pizzolli <dan@toel.it>
<http://permalink.gmane.org/gmane.emacs.orgmode/95348>
* lisp/ob-core.el (org-babel-view-src-block-info): when a property
value was numeric, an error was raised. Fixed by converting property
value to string before evauation.
* lisp/ob-core.el (org-babel-view-src-block-info): Add property string
"header args" to output of org-babel-view-src-block-info to make
debugging of header-args setting problems easier.
* lisp/ob-core.el (org-babel-view-src-block-info): Add property string
for language specific "header args:LANG" to output of org-babel-view-src-block-info to make
debugging of header-args setting problems easier.
* ob.core.el (org-babel-remove-inline-result): Removing an inline src
block result removes all whitespace preceding it. The function is
now `interactive'.
* ob-core.el (org-babel-insert-result): The call to
`org-babel-remove-inline-result' preceeds insertion of whitespace
and setting location of local variable `inlinep'.
Daniele Pizzolli reported that cleaning a buffer by evaluating
`org-babel-remove-inline-result' can leave unwanted whitespace. That
bug is fixed, and the function is made `interactive'.
* lisp/ob-core.el (org-babel-remove-inline-result): Delete results of
current inline src block or inline babel call if it is wrapped in a
"{{{results(.*)}}}" macro call.
* lisp/ob-core.el (org-babel-get-lob-one-liner-matches): Ensure that
the point ends up on the same line as, and just before, `call_'
before setting match-data.
* ob-core.el (org-babel-get-inline-src-block-matches): Use
`org-element-context' and friends to find inline-src-block. When
point is in an inline-src-block (including white space determined by
:post-blank) set match-data and return `t'.
* lisp/ob-core.el (org-babel-insert-result): Delete any `results'
macro following current inline src block or babel call; insert
current value in 'results' macro possibly wrapping RESULT in an
export snippet or inline source block first. Use of `:results list'
or `:results table', or use of a multiline RESULT (after stripping a
trailing newline) or a list RESULT from an inline src block or babel
call throws an error.
* lisp/ob-core.el (org-babel--script-escape-inner): New function.
(org-babel-script-escape): Use it.
* testing/lisp/test-ob.el (test-org-babel/script-escape): New test.
* lisp/ob-core.el (org-babel-get-inline-src-block-matches): Use
`org-looking-at-p' instead of `thing-at-point'.
The latter could give odd results depending on the syntax table. In
particular, for me (thing-at-point 'word) was returning src_foo in
this context.
* lisp/ob-core.el (org-babel-where-is-src-block-head): Refactor. In
particular, do not return a marker, ever. Also update docstring.
* testing/lisp/test-ob.el (test-ob/org-babel-remove-result--results-org):
Fix tests containing invalid Org syntax.
* lisp/ob-core.el (org-babel-map-src-blocks,
org-babel-map-inline-src-blocks): Make sure to ignore case when
looking for source blocks.
Reported-by: Christopher Genovese <genovese@cmu.edu>
<http://permalink.gmane.org/gmane.emacs.orgmode/93454>
* lisp/ob-exp.el (org-babel-exp-inline-code-template): New
customizable variable to export inline source code (similar to
`org-babel-exp-code-template').
(org-babel-exp-code): New `type' argument to differentiate between
inline and standard code blocks.
* lisp/ob-core.el (org-babel-inline-src-block-regexp): Allow empty set
of switches and header arguments as in "src_sh[]{echo foo;}". Also
permit spaces before them.
* testint/lisp/test-org-element.el
(test-org-element/inline-src-block-parser): Test extended syntax for
inline source code.
* testing/lisp/test-ob-exp.el (ob-exp/exports-inline-code): New
function for testing inline source code handling. Also add three new
failing tests exhibiting unexpected results with ":results code"
switches.
* testing/lisp/test-ob.el
(test-org-babel/org-babel-get-inline-src-block-matches): Test for
inline source blocks with empty header arguments.
* testing/examples/babel.org: New sections for testing (i) exported
inline source code (used by `ob-exp/exports-inline-code'); (ii)
parsing inline source blocks with empty header arguments (used by
`test-org-babel/org-babel-get-inline-src-block-matches').
Until now pieces of inline source code were handled as standard code
blocks during export. These changes enable them to be exported.
* lisp/ob-core.el (org-babel-common-header-args-w-values): Add
:output-dir'.
Otherwise tthis property is not inherited correctly from
subtree-/file-level properties.
* lisp/ob-core.el (org-babel-noweb-error-all-langs): Raise noweb
errors regardless of language.
(org-babel-expand-noweb-references): Make use of the new
`org-babel-noweb-error-all-langs' variable.
* lisp/ob-core.el: Add comment to forward declaration of
'org-src-preserve-indentations'.
* lisp/ob-exp.el: Require org-src to import
'org-src-preserve-indentations'.
* lisp/ob-haskell.el, lisp/ob-python.el: Remove superfluous forward
declaration of 'org-src-preserve-indentations', since it gets
imported by other requires.
* ob-core.el (org-babel-insert-result): Test all list elements against
listp and (eq element 'hline) instead of checking just the first.
org-babel table output uses different formatting for a list of lists,
but detects it incorrectly causing an error. An example of a block
causing an error is an emacs lisp source block containing just 1 line:
'((1) 2)
* ob-core.el (org-babel-demarcate-block): Upcase or downcase
the inserted #+begin_src and #+end_src depending on the
current case of #+begin_src and #+end_src.
Thanks to Alexander Baier for reporting this.
* lisp/ob-core.el (org-babel-generate-file-param): New function.
(org-babel-get-src-block-info): Use it.
(org-babel-merge-params): Handle :file-ext.
(org-babel-graphical-output-file): error if no :file or :file-ext.
* testing/lisp/test-ob.el (test-org-babel/file-ext-and-output-dir):
New test.
* doc/org.texi (Specific header arguments): Add doc for :file-ext and
:output-dir header args.
* lisp/ob-R.el (org-babel-expand-body:R): Don’t calculate
graphics-file.
(org-babel-execute:R): Only look for a graphics-file if needed.
* lisp/ob-core.el (org-babel-graphical-output-file): New generic function.
* lisp/ob-R.el (org-babel-R-graphical-output-file): Delete specific version.
(org-babel-expand-body:R): Use generic version.
* lisp/ob-maxima.el (org-babel-maxima-graphical-output-file): Delete
specific version.
(org-babel-maxima-expand): Use generic version.
* lisp/ob-octave.el (org-babel-octave-graphical-output-file): Delete
specific version
(org-babel-execute:octave): Use generic version.
* org.el (org-trim): Rewrite and make a defsubst.
* org-bibtex.el (org-bibtex-get): Use `org-trim' instead of
`org-babel-trim'.
* ob-core.el (org-babel-trim): Delete and alias to `org-trim'.
(org-babel-chomp): Delete and alias to `org-trim-trailing'.
(org-trim-trailing): New defsubst.
(org-babel-examplize-region): Fix version.
* ob-core.el (org-babel-remove-result-one-or-many): New function.
* ob-keys.el (org-babel-key-bindings): Add a keybinding for the
new function `org-babel-remove-result-one-or-many'.
TINYCHANGE
* lisp/ob-core.el (org-babel-exp-reference-buffer): New variable, as
a replacement for `org-current-export-file'.
(org-babel-check-confirm-evaluate): Use new variable.
* lisp/ob-exp.el (org-babel-exp-in-export-file): Use new variable.
(org-babel-exp-get-export-buffer): Remove function.
(org-babel-exp-process-buffer): Change signature.
* lisp/ob-ref.el (org-babel-ref-resolve): Use new variable during
export in order to properly resolve references.
* lisp/ox.el (org-export-execute-babel-code): Use new variable.
* contrib/lisp/org-wikinodes.el (org-wikinodes-process-links-for-export):
Remove a cond branch as it is always
false (`org-current-export-file' couldn't be a string).
* testing/lisp/test-ob-lob.el (test-ob-lob/export-lob-lines): Update
test.
* testing/lisp/test-ob.el (test-ob/eval-header-argument): Update test.
* testing/lisp/test-ob-exp.el (ob-export/reference-in-post-header):
New test.
During export, Babel executes sequentially all blocks in the buffer
being exported. This can lead to modifications preventing some
references from being resolved. As a workaround, Babel stores
a pristine copy of the buffer in a variable so it can always find
needed references.
Before this patch, the variable storing this copy was
`org-current-export-file' and was dynamically bound in "ox.el". It
was used to resolve noweb references (`org-babel-expand-noweb-references')
but not regular references (`org-babel-ref-resolve').
Now, the variable is `org-babel-exp-reference-buffer' and it is bound
from `org-babel-exp-process-buffer'. It is used to resolve all
references. In particular, this allows to use references in :post
header.
Thanks to Jarmo Hurri for reporting it.
* ob-core.el (org-babel-insert-result): Use `org-babel-examplify-region'.
(org-babel-capitalize-examplize-region-markers): Rename to
`org-babel-capitalize-example-region-markers'.
(org-babel-examplize-region): Mark obsolete and rename to
`org-babel-examplify-region'.
* lisp/ob-core.el (org-babel-current-result-hash): Additional info
argument so that named call line results may be found.
(org-babel-set-current-result-hash): Additional info argument so
that named call line results may be found.
* lisp/ob-lob.el (org-babel-lob-execute): Passing info to hash finding
functions so that named results may be found.
The bulk of the new code in org-babel-sha1-hash is borrowed from
org-babel-expand-src-block.
* lisp/ob-core.el (org-babel-sha1-hash): Expanded noweb references
when calculating hashes.
* org.el (org-babel-do-in-edit-buffer): Declare.
(org-babel-load-file, org-insert-comment)
(org-comment-or-uncomment-region): Don't require 'ob-core.
(org-mode-map): Remap `comment-dwim' to `org-comment-dwim'.
(org-comment-dwim): New command.
* ob-core.el (org-babel-do-in-edit-buffer): Make an autoload.
See http://lists.gnu.org/archive/html/emacs-devel/2013-12/msg00154.html
for a discussion about this bug.
* lisp/ob-C.el (org-remove-indentation): Declare function to appease
compiler.
* lisp/ob-core.el (org-remove-indentation): Declare function to
appease compiler.
* lisp/ob-fortran.el (org-remove-indentation): Declare function to
appease compiler.
* lisp/ob-C.el (org-babel-C-execute): Remove common indentation when
trimming.
* lisp/ob-core.el (org-babel-read-result): Remove common indentation
when trimming.
(org-babel-update-block-body): Remove common indentation when
trimming.
* lisp/ob-fortran.el (org-babel-execute:fortran): Remove common
indentation when trimming.
* lisp/ob-tangle.el (org-babel-process-comment-text): Better default
to process tangled comments.
* lisp/ob-core.el (org-babel-execute-src-block): Set location info
parameter for inline src blocks.
(org-babel-get-src-block-info): Set location info parameter for
inline src blocks.
This fixes a bug noticed by Rick Frankel in which two subsequent
#+call: lines will both update the same results. Before this commit
both of the following call lines would update the same result.
#+name: call-me
#+BEGIN_SRC emacs-lisp :var v="nil"
v
#+END_SRC
#+call: call-me("one")
#+call: call-me(v="two")
#+RESULTS:
: one
Now both lines are given their own result.
#+name: call-me
#+BEGIN_SRC emacs-lisp :var v="nil"
v
#+END_SRC
#+call: call-me("one")
#+RESULTS:
: one
#+call: call-me(v="two")
#+RESULTS:
: two
* lisp/ob-core.el (org-every): Declared function for compiler.
(org-babel-safe-header-args): Moved before first use.
(org-babel-header-args-safe-fn): Moved before first use.
Always call org-confirm-babel-evaluate from the head of the code
block being evaluated so that the info may be found with
e.g., (org-babel-get-src-block-info 'light)
* lisp/ob-core.el (org-babel-check-confirm-evaluate): Call
org-confirm-babel-evaluate from code block head.
* lisp/ob-core.el (org-babel-insert-header-arg): Optional arguments
for usage from Emacs Lisp programs. In addition this function will
now insert header arguments in the correct place instead of at the
current point.
This patch is based off of a request and an initial patch supplied by
Daniele Pizzolli.
* lisp/ob-core.el (org-babel-remove-result): Added an option to keep
the results keyword when removing the content of results.
* lisp/ob-core.el (org-babel-default-header-args): It is likely that
someone meant to set :padlines to "yes", but accidentally set
:padnewlines to "yes". Either way lets just remove this which
shouldn't have any functional effect.
Thanks to Rick Frankel for help debugging this problem.
* lisp/ob-core.el (org-babel-merge-params): When merging parameters, if
a variable is replaced with a new value, then delete colnames/rownames
for the original value of that variable.
* lisp/ob-core.el (org-babel-check-confirm-evaluate): Return result of
evaluating the function pointed to by`org-confirm-babel-evaluate'
when it is a functionp and its value as a variable otherwise.
This fixes a regression introduced in 5fe486807e and restores the fix
applied earlier in 8d272b0d3b (and then replaced by a cond form in
ece347e32c, which later got factored out again).
* lisp/ob-core.el (org-babel-find-named-result): Call lines are not
results.
(org-babel-where-is-src-block-result): Don't implicitly name the
results of call lines.
* lisp/ob-exp.el (org-babel-exp-non-block-elements): There is now
another element on the call line info list.
* lisp/ob-lob.el (org-babel-lob-get-info): Return the name (if any)
at the end of the info list.
(org-babel-lob-execute): Pass the name through to execution.
* lisp/ob-core.el (org-babel-get-rownames),
lisp/org-table.el (org-table-transpose-table-at-point): Replace the
inadvertent use of mapcar* (from cl) by plain mapcar and direct cons
manipulation.
The error was not caught at compilation time since both source files
require cl during compilation for using cl macros. These were the
only uses of mapcar* in Org, but I didn't check for other cl
_functions_ (as opposed to macros, which would need to be checked if
their implementation uses cl functions).
* lisp/ob-core.el (org-babel-execute-src-block): Ensure that the
location is set before anything else is done.
* lisp/ob-ref.el (org-babel-ref-parse): Evaluate Emacs Lisp values in
header arguments at the location of the original code block.
* testing/lisp/test-ob.el (test-ob/location-of-header-arg-eval): Test
defending the new header argument evaluation behavior.
* lisp/ob-core.el (org-babel-params-from-properties): Use
`org-babel-current-src-block-location' for evaluating new-style
header-argument properties. Remove superfluous save-match-data
clauses. Comment which properties get evaluated where.
* lisp/ob-gnuplot.el (org-babel-expand-body:gnuplot): Use new header
arguments.
* lisp/ob-core.el (org-babel-common-header-args-w-values): Mention new
header arguments.
(org-babel-expand-body:generic): Use new header arguments.
* doc/org.texi (Specific header arguments): Document new header
arguments.
* lisp/ob-core.el (org-babel-read-result): More robust matching of
examplized ranges.
(org-babel-result-end): More robust matching of examplized ranges.
The `org-babel-params-from-properties' command was calling
`org-babel-merge-params', the output of which was then being fed back
to another call to `org-babel-merge-params'. The merge params
function is not designed to allow this form of recursive calling, and
as a result many variables were being set to empty values.
The first noticed side effect of this bug was the breakage of the
org-babel-load-file command, which relies on default header
arguments (namely :tangle), which were overwritten by the bug above.
The fix involved having the `org-babel-params-from-properties'
function return a list of alists, which may then all be handed to the
top-level merge-params call.
* lisp/ob-core.el (org-babel-params-from-properties): Now returns a list
of alists and does *not* call `org-babel-merge-params'.
(org-babel-parse-src-block-match): Handle new list of lists output of
`org-babel-params-from-properties'.
(org-babel-parse-inline-src-block-match): Handle new list of lists
output of `org-babel-params-from-properties'.
* lisp/ob-exp.el (org-babel-exp-src-block): Handle new list of lists
output of `org-babel-params-from-properties'.
(org-babel-exp-non-block-elements): Handle new list of lists output of
`org-babel-params-from-properties'.
* lisp/ob-lob.el (org-babel-lob-execute): Handle new list of lists
output of `org-babel-params-from-properties'.
* lisp/ob-core.el (org-babel-insert-header-arg,
org-babel-parse-src-block-match): Replace `if' with empty else part
by `when' for readability. (org-babel-params-from-properties):
Inquire for language specific and default header properties.
Language specific header properties take precedence over default
header properties and old-style header property specifications.
This allows for header arguments to be specified as
properties (including inheritance).
#+PROPERTY: header-args :cache "no"
#+PROPERTY: header-args:R :session "*R-property*"
:PROPERTIES:
:header-args: :cache "yes"
:header-args:R: :session "*R-drawer*"
:END:
* doc/org.texi (Top): Documentation for new tangle-mode header argument.
(Specific header arguments): Documentation for new tangle-mode header
argument.
(rownames): Documentation for new tangle-mode header argument.
(tangle-mode): Documentation for new tangle-mode header argument.
* lisp/ob-core.el (org-babel-common-header-args-w-values): Adding the
new :tangle-mode header argument.
(org-babel-read): Read values starting with a "#" character as emacs
lisp.
* lisp/ob-tangle.el (org-babel-tangle): Use the new :tangle-mode header
argument.
* lisp/org-pcomplete.el (pcomplete/org-mode/block-option/src): Use the
new :tangle-mode header argument.
* lisp/ob-core.el (org-babel-where-is-src-block-head): return
point-marker instead of point.
(org-babel-current-exec-src-block-head): new global variable which is
bound during `org-babel-execute-src-block-maybe'
(org-babel-get-src-block-info): return a list of 7 elements, last
being the header location
Evaluation backends might need to use the exact location of the block in
original org file. For example when inserting the correct source
references for visual debugging. With this patch the information on
current block is available in `org-babel-current-exec-src-block-head'.
* lisp/ob-core.el (org-babel-parse-inline-src-block-match),
lisp/ob-exp.el (org-babel-exp-src-block): Give header arguments from
properties priority over default header arguments.
The previous commit e79e8943de did fix this only in
ob-core.el (org-babel-parse-src-block-match). It was already correct
in ob-lob.el (org-babel-lob-execute).
* lisp/ob-core.el (org-babel-inline-result-wrap): Defcustom controlling
the wrapping of inline results.
(org-babel-examplize-region): Use new defcustom controlling the
wrapping of inline results.
* org-agenda.el (org-agenda-write):
* ob-core.el (org-babel-expand-src-block): Use
`org-called-interactively-p'.
Thanks to Jason L Wright for reporting this.
* lisp/ob-core.el (org-babel-execute-src-block): Return nil in case of
`:results none'. Also run `org-babel-after-execute-hook' in this
circumstance.
Previously, the code returned the string "results silenced" in the case
of =:results none=, as this is the return value of the call to
`message'; additionally, the after-execute hook was not being run.
* ob-core.el (org-babel-insert-result): Fix bug when inserting
results as a list: ensure we split a string containing "\n".
Thanks to Sébastien Vauban for reporting this.
* lisp/ob-core.el (org-babel-when-in-src-block): New macro.
(org-babel-execute-src-block-maybe)
(org-babel-expand-src-block-maybe)
(org-babel-load-in-session-maybe, org-babel-pop-to-session-maybe):
Use it.
org-babel-get-src-block-info is a potentially expensive operation, which
is why its ‘light’ argument exists. But in any case, it is overkill to
query the whole info, if all that is needed is whether point is in a
block or not. Factor the simplified common code out into a macro.
* lisp/ob-core.el (org-babel-execute-src-block): Use `copy-tree'
to prevent setf from modifying users variables withing let-bound
`info' variable.
Otherwise, the setf calls in this function can reach into and change
other configuration variables, such as the library of babel.
* lisp/ob-core.el (org-babel-execute-src-block): Make sure we process
file results before they are passed to the post-processing code block,
and not afterwards. Tangles these two header arguments in the code,
but makes for more intuitive behavior and enables important use cases.
* lisp/ob-core.el (org-babel-common-header-args-w-values): Add :post to
the list of header arguments.
(org-babel-execute-src-block): Post process results when the :post
header argument has been supplied.
* doc/org.texi (var): Remove the "Alternate argument syntax" section
from the documentation.
* lisp/ob-core.el (org-babel-src-name-w-name-regexp): Update the regexp
used to match code block names.
(org-babel-get-src-block-info): Remove the code used to parse this
alternate variable specification syntax.
* lisp/ob-core.el (org-babel-temp-file): For remote hosts, modify the prefix
and leave `temporary-file-directory' unchanged.
The reason setting `temporary-file-directory' doesn't work here is
because `make-temp-file' recursively calls itself (indirectly).
Modifying `temporary-file-directly', affects the recursive calls as well,
which results in a "No such file file or directory" error.
The fix is to leave `temporary-file-directory' unaltered, for remote
hosts, and instead modifying the 'prefix' argument to `make-temp-file'
appropriately.
TINYCHANGE
* lisp/ob-core.el (org-babel-confirm-evaluate-answer-no): Dynamically
scoped variable, if bound non-nil the confirmation dialog will not
be initiated and denial of evaluation is assumed.
The new variable `org-babel-confirm-evaluate-answer-no´ can be bound
to suppress the user interaction as is needed for async export, as
discussed in http://thread.gmane.org/gmane.emacs.orgmode/67719
multiple changes to remove overly long lines.
* lisp/ob-core.el (org-babel-execute-src-block): A cond makes it more
clear that we definitely do not execute without user confirmation.
(org-babel-where-is-src-block-result): Overly long line.
* lisp/ob-core.el (org-babel-check-confirm-evaluate): New macro to
establish bindings based on INFO.
* lisp/ob-core.el (org-babel-check-evaluate): New defsubst that checks
if the evaluation of a code block is disabled. Refactors the first
part of the original function `org-babel-confirm-evaluate´.
* lisp/ob-core.el (org-babel-confirm-evaluate): New defsubst that
checks if the user should be queried and returns the answer. Keeps
the second part of the original function `org-babel-confirm-evaluate´.
* lisp/ob-core.el (org-babel-execute-src-block): Do not ask for
confirmation if the cached result is current.
* lisp/ob-core.el (org-babel-confirm-evaluate): Re-implement using
bindings for common subexpressions.
There was a minor bug in the reporting of an aborted evaluation as
"disabled" when no export was happening and eval-no-export was t since
the state of the export was not checked again.
* lisp/ob-core.el (org-babel-call-process-region-original): Change
declaration into definition with nil initial value at the beginning
of the file and drop the later definition. Add comment that the
dynamic scoping of this variable is done for tramp.
Reverting "Fix a typo I introduced while editing Achim's commit 091bf0"
Reverting "ob-core.el: Do not ask for confirmation if cached value is current"
This reverts commit 091bf02514.
* ob-core.el (org-babel-execute-src-block): Do not run
`org-babel-confirm-evaluate´ if source block has a cache and the
cache value is current (there is no evaluation involved in this
case).
* lisp/org.el (org-reverse-string): Add `org-reverse-string' to
reverse a string.
* lisp/org-id.el(org-id-new, org-id-decode): Replace
`org-id-reverse-string' by `org-reverse-string'.
* lisp/ob-core.el(org-babel-trim): Replace `org-babel-reverse-string'
by `org-reverse-string' and declare it.
TINYCHANGE
* add a header-row delimiter to the tables returned from mysql
* add new sql-specific header args for the database connection, and implements them for mysql
* add support for :colnames (mysql only)
* (minor) add an edebug spec to org-babel-result-cond to allow edebugging through it
* add some doc about what header args are used
The syntax of result hashes with times are now as show below.
#+RESULTS[<TIME> HASH]:
* lisp/ob-core.el (org-babel-result-regexp): Simplified regexp given new
time hash layout.
(org-babel-current-result-hash): New match string.
(org-babel-hide-hash): New match string.
(org-babel-where-is-src-block-result): New match string, and inserting
hashes in the new format.
* ob-core.el (org-babel-next-src-block)
(org-babel-previous-src-block): Rewrite using
`org-next-block'.
* org.el (org-next-block, org-previous-block): New navigation
commands.
(org-mode-map): Bind the new commands to C-c C-F and C-c C-B
respectively.
Thanks to Bill White for suggesting this.
* ob-core.el (org-ts-regexp): Remove duplicate defconst'ing.
(org-babel-result-regexp): Don't use `org-ts-regexp', use a
regexp string directly.
This is not the best solution, we should be able to use
`org-ts-regexp' here, but the dependencies makes it hard.
So let's not define org-ts-regexp twice, just use a raw
regexp instead, and add a FIXME warning about this.
suggested by Thomas Alexander Gerds
* lisp/ob-core.el (org-babel-result-regexp): Now matching time stamp as
well.
(org-babel-hash-show-time): Variable controlling the display of time
stamps.
(org-babel-current-result-hash): With hash time stamps.
(org-babel-hide-all-hashes): With hash time stamps.
(org-babel-where-is-src-block-result): With hash time stamps.
Nicolas Goaziou
Paul Eggert
Kyle Meyer
Michael Albinus
Aaron Ecay
Charles Berry
Stefan Monnier
Dmitry Antipov
Bjarte Johansen
Rainer M. Krug
Nicolas Berthier
Bastien Guerry
Eric Schulte
Achim Gratz
Ian Kelling
Michael Weylandt
Nicolas Goaziou
Carsten Dominik
Aditya Siram
Vitalie Spinu
Sebastien Vauban
Suhail Shergill
Grégoire Jadi
Gary Oberbrunner