8318845f6d
babel: stashing away text dangling after the process mark in comint buffers
...
* contrib/babel/lisp/org-babel-comint.el (org-babel-comint-with-output):
If there is dangling text left after the process mark in a comint
buffer, it will now be safely stored away during babel execution,
and then replaced when babel is finished with the buffer.
This commit also fixes some indentation issues.
2010-06-07 12:25:58 -07:00
909f375ba6
babel: fixing indentation in org-babel-ruby.el
...
* contrib/babel/lisp/langs/org-babel-ruby.el (org-babel-execute:ruby):
fixing indentation
* contrib/babel/lisp/langs/org-babel-ruby.el (org-babel-ruby-evaluate):
fixing indentation
2010-06-07 12:13:37 -07:00
6e34e75888
babel: small wait on new ruby sessions to allow process to start
...
* contrib/babel/lisp/langs/org-babel-ruby.el (org-babel-ruby-initiate-session):
Adding a small wait after stating a new ruby session. This avoids
errors with `ansi-color-process-output' not being able to find the
process mark.
2010-06-07 12:08:43 -07:00
dc2baab09c
babel: protecting restrictions on `org-babel-execute-subtree'
2010-06-07 11:52:04 -07:00
ee94addaac
babel: now strips protective commas from code blocks on tangling
2010-06-07 11:46:11 -07:00
4e43e7fea8
babel: adding library-of-babel functions for file I/O
...
* contrib/babel/lisp/org-babel.el (org-babel-insert-result): Replaced
call to `org-cycle' with a call to the simpler and more appropriate
`org-table-align'.
* contrib/babel/library-of-babel.org (Read/Write): adding
library-of-babel functions for file I/O
2010-06-06 19:56:09 -07:00
367d81d9dc
babel: all code blocks with sessions are now evaluated on export
...
* contrib/babel/lisp/org-babel-exp.el (org-babel-exp-do-export):
This brings babel more inline with Sweave, by ensuring that any code
block which could change the state in a persistent session is
executed. Prior to this change the following org-mode text like would
not export as expected because the x variable would not be
initialized.
** inline expressions
:PROPERTIES:
:session: *R*
:END:
#+begin_src R :exports code :results silent
x<-5
#+end_src
the sum of 1 and 4 is equal to src_R{x}
2010-06-06 19:13:14 -07:00
f70956ff5a
Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode
2010-06-04 21:02:41 +02:00
dc602f3b2e
Emacs 22 support - use org-string-match-p
...
* contrib/lisp/org-special-blocks.el (org-special-blocks-make-special-cookies):
Emacs 22 doesn't have string-match-p
* lisp/org-freemind.el (org-freemind-write-mm-buffer):
(org-freemind-get-node-style):
Emacs 22 doesn't have string-match-p
* lisp/org-html.el (org-html-make-link):
Use new org-string-match-p for compatibility
2010-06-04 21:01:29 +02:00
507e06f586
org-mime: now allows style customization based on class attributes
2010-06-04 10:56:56 -06:00
359a86cda4
babel-asymptote: now accepts variables in a variety of types
2010-06-04 09:51:18 -06:00
198780f1ff
babel: adding some newline padding around tangle code blocks
2010-06-02 14:07:20 -06:00
c5e3660fa9
babel: tangle works when buffer name and file name differ
...
Thanks to "w t" from the mailing list for reporting this bug and
providing reproduction information.
2010-06-02 09:07:23 -06:00
47a6c25df3
org-babel-tangle: fixing indentation
2010-06-02 09:07:22 -06:00
afab7897a5
babel: fixed error resolving references on export
...
Thanks to Nicolas Goaziou for reporting this problem
2010-06-02 09:07:01 -06:00
b7e273f25d
babel-exp: minor documentation and indentation changes
2010-06-02 09:07:00 -06:00
8fac7aa38b
Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode
2010-05-28 08:48:22 -06:00
ff58dacc7c
babel: `org-babel-tangle-w-comments' controls comment insertion in tangled code
...
* contrib/babel/lisp/org-babel-tangle.el (org-babel-spec-to-string):
The insertion of automatically generated comments into tangled code
is now customizable through the `org-babel-tangle-w-comments'
variable.
2010-05-28 08:48:03 -06:00
e5d8764de6
babel: Declare R-specific header arguments
...
* babel/lisp/langs/org-babel-R.el
(org-babel-header-arg-names:R):
New variable to contain R-specific header args
2010-05-28 09:53:13 -04:00
71cd358e21
babel: check properties for language-specific header arguments
...
* contrib/babel/lisp/org-babel.el
(org-babel-params-from-properties):
Check for language-specific header arguments
(org-babel-parse-src-block-match):
Pass lang parameter when checking properties for header args
(org-babel-parse-inline-src-block-match):
Pass lang parameter when checking properties for header args
2010-05-28 09:50:20 -04:00
6fc2ea3b9b
Xemacs incompatibilities
...
Carsten Dominik <carsten.dominik@gmail.com> writes:
> On May 17, 2010, at 4:39 PM, Michael Sperber wrote:
>
>> In particular, fixing the require won't be enough: org-babel-python.el
>> uses `run-python' and interacts with the inferior Python, whereas
>> python-mode.el defines `py-shell'.
>>
>> Should I try to abstract over the differences?
>
> Yes, this would be much appreciated. (I think, Eric or Dan?)
OK, I've attached a patch that makes `org-babel-python' work on XEmacs.
Most of the issues are pure XEmacs issues. Notes:
- XEmacs doesn't have [[:digit:]] - I hope to rectify this in the
future, but it seems there's no downside in this particular case to
replacing by [0-9].
- XEmacs doesn't have `move-end-of-line', but does have `end-of-line'.
I don't understand the intent of having both of these, but the code
seems fine with `end-of-line'.
- It seems there are way too few `require's throughout org-babel. I
don't know if it's OK to add the ones I needed.
- `org-babel-python-evaluate' looked broken as-is: It doesn't use the
`body' argument properly, the result is (I think) processed in the
wrong order and not properly split into lines. I've fixed all these,
but a review is probably in order.
2010-05-26 22:45:01 -06:00
5d52daab10
babel: org-babel-execute-buffer is no longer flummoxed by hidden subtrees
2010-05-26 19:44:04 -06:00
8d78778c89
babel: updated key bindings in refcard
...
and removed a binding which was shadowing the `keyboard-quit'
2010-05-26 16:55:48 -06:00
4f113630f8
org-babel-exp: no longer throws errors on empty bodies
2010-05-25 20:20:13 -06:00
ceeb4681ef
babel: tangled files which include shebang lines are now made executable
2010-05-25 20:01:20 -06:00
6151c88f10
babel: replaced `line-number-at-pos' with `count-lines'
2010-05-25 17:31:34 -06:00
d84699459e
babel: xemacs variable compatibility check -- thanks to Volker Zell
2010-05-25 17:29:41 -06:00
cdef6061bf
Fix typo
2010-05-20 05:42:24 +02:00
5eb7bf8a03
Add Anthony Lander's org-mac-link-grabber.el
2010-05-19 23:49:40 +02:00
2139651c0d
babel: org-babel-clean-text-properties now checks for valid argument
...
thanks to Michael Sperber for pointing this out
2010-05-17 17:13:20 -06:00
236f209b25
babel: changes to org-babel key bindings
2010-05-17 17:08:32 -06:00
38b4fcc90c
XEmacs compatibility
2010-05-14 14:40:44 +02:00
b7555ae433
babel: new keymap `org-babel-map' and new prefix keys "C-c C-v"
2010-05-12 23:51:41 -06:00
4b1ee671b8
Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode
2010-05-11 23:31:38 +02:00
7a0619cbe8
Fix bug in org-git-link.el
2010-05-11 23:31:30 +02:00
98af57cdbd
babel: ob-sh.el now respects the :results "scalar" option
2010-05-07 17:18:38 -06:00
37f9639a43
Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode
2010-05-04 09:58:25 -06:00
a16e887fff
org-mime: now using `temporary-file-directory' instead of "/tmp" -- thanks to Uday S Reddy for catching this
2010-05-04 09:49:07 -06:00
2d1025298e
babel: More concise matlab/octave code template
...
Patch by Christopher Long
2010-05-03 21:45:27 -04:00
245d98786d
babel: matlab: detect end of evaluation under Emacs Link
...
Currently, this uses the presence of a temporary file to signal that
Matlab Emacs Link evaluation is not yet complete.
Emacs Link support added in collaboration with Christopher Long.
2010-05-03 21:45:01 -04:00
c133dd394e
babel: Fix org-babel-screen after expand changes
2010-05-02 21:30:13 -04:00
d2b9343029
babel: Avoid trouble with '%' in matlab/octave output
...
Patch by Christopher Long
2010-05-02 18:26:22 -04:00
65a98e3282
babel: fix editing error in org-babel-octave.el
2010-05-02 00:41:53 -04:00
1a43a5939b
Merge branch 'octave-matlab'
2010-04-30 18:26:37 -04:00
a61de7b130
babel: matlab: don't try matlab-shell if using emacs link
2010-04-30 18:23:36 -04:00
a3cc050a96
babel: `org-babel-get-colnames' no longer requires hline
2010-04-30 13:03:46 -06:00
6f399c20b6
babel: Allow EmacsLink to be used for matlab session evaluation
...
To use EmacsLink, the user will need to set
org-babel-matlab-with-emacs-link to a non-nil value, and also arrange
that (matlab-with-emacs-link) evaluates to a non-nil value.
2010-04-30 14:39:31 -04:00
10a07a644b
babel: R: allow forcing of colnames without hline
2010-04-30 14:14:27 -04:00
7f3e64bfb4
babel: R: output colnames when other languages would
2010-04-30 14:14:13 -04:00
413e6b4eee
Add handling of blockquote and output formats that must be flowed.
...
Added a handler for blockquotes.
Also added :body-newline-paragraph to the org-set-generic-type. This is
intended to help handling output formats (like tikiwiki) where newlines are
treated as paragraph separators, instead of being used to fill (i.e., the
destination is expected to do the word-wrapping). If this is set to T then
org-export-generic will emit a newline character when it sees a blank
line. This should be used in concert with a value like "%s " for
:body-line-format and nil for :body-line-wrap.
2010-04-29 15:57:03 +02:00
6a1f5b2bcb
babel: ob-emacs-lisp now wraps body in a progn on execute
2010-04-27 13:55:48 -06:00
837e898936
babel: Fall back to generic expand function during tangling
2010-04-27 15:02:55 -04:00
44bb82d38e
babel: `org-babel-ref-resolve-reference' doesn't break paren nesting when resolving indicies
2010-04-24 13:26:34 -06:00
b8adc74894
babel: ob-emacs-lisp and ob-clojure now only wrap bodies in `let' forms when variables are present
2010-04-24 09:21:14 -06:00
bc0a6c624d
babel: adding :no-expand option to code blocks to inhibit body expansion
2010-04-24 09:08:27 -06:00
c12e18b6cf
babel: org-babel-reassemble-table checks for matching table/name dimensions
2010-04-23 11:54:31 -06:00
b8c4bb27ba
babel: Use org-src edit buffer for expanded body preview
2010-04-23 10:10:01 -06:00
2f71d79e5e
org-babel-c: now using org-babel-read on outline-property parameters
2010-04-23 10:10:00 -06:00
9124e9055d
fixed bug in org-babel-execute:C
2010-04-23 10:10:00 -06:00
59251c8d08
babel: fixed bug in org-babel-execute:gnuplot related to body-expand changes
2010-04-23 10:10:00 -06:00
d0dde7c6d5
babel: flip default values of :hlines header arg
2010-04-23 10:10:00 -06:00
9fdd058669
org-babel-expand-body:R
2010-04-23 10:10:00 -06:00
32c7ae42c3
babel: remove superfluous newlines from tangled C code bodies
2010-04-23 10:10:00 -06:00
03f13106fb
babel: adding org-babel-expand-body:generic for languages w/o body expansion support
2010-04-23 10:10:00 -06:00
626cb079e4
babel: fixed bug in org-babel-expand-body:sass
2010-04-23 10:10:00 -06:00
7decdec3b2
babel: erase previous contents of preview buffer
2010-04-23 10:10:00 -06:00
8872454566
org-babel-expand-body:R
2010-04-23 10:10:00 -06:00
0917218da5
babel: fixed bug in org-babel-expand-body:python
2010-04-23 10:10:00 -06:00
9ff31a5110
babel: bound `org-babel-expand-src-block' to (C-c M-b p)
2010-04-23 10:09:59 -06:00
0734bf96ba
org-babel-expand-body:sql
2010-04-23 10:09:59 -06:00
1fdc012e3d
org-babel-expand-body:sh
2010-04-23 10:09:59 -06:00
e6c979f0d7
org-babel-expand-body:screen
2010-04-23 10:09:59 -06:00
35434e1389
org-babel-expand-body:sass
2010-04-23 10:09:59 -06:00
394031eb38
org-babel-expand-body:ruby
2010-04-23 10:09:59 -06:00
1bcafa5d9f
org-babel-expand-body:python
2010-04-23 10:09:59 -06:00
598dc1ad67
org-babel-expand-body:perl
2010-04-23 10:09:59 -06:00
41663b0ce4
org-babel-expand-body:oz
2010-04-23 10:09:59 -06:00
2759b6621d
org-babel-expand-body:octave
2010-04-23 10:09:59 -06:00
8e9f4eec88
org-babel-expand-body:ocaml
2010-04-23 10:09:58 -06:00
e07aced178
org-babel-expand-body:matlab
2010-04-23 10:09:58 -06:00
7bd0712ac2
org-babel-expand-body:latex
2010-04-23 10:09:58 -06:00
dd500005ef
org-babel-expand-body:haskell
2010-04-23 10:09:58 -06:00
58c8ddd5c6
org-babel-expand-body:gnuplot
2010-04-23 10:09:58 -06:00
01918dffc4
org-babel-expand-body:dot
2010-04-23 10:09:58 -06:00
4d862912b2
org-babel-expand-body:ditaa
2010-04-23 10:09:58 -06:00
b805089eb8
org-babel-expand-body:css
2010-04-23 10:09:58 -06:00
6d61edd1ea
org-babel-expand-body:clojure
2010-04-23 10:09:58 -06:00
4ba08f9b5b
org-babel-expand-body:asymptote
2010-04-23 10:09:58 -06:00
34eed9b48d
org-babel-expand-body:c, org-babel-expand-body:c++
2010-04-23 10:09:58 -06:00
8c8c96972e
org-babel-expand-body:emacs-lisp
2010-04-23 10:09:58 -06:00
2fe12b99f4
babel: adding new function `org-babel-expand-src-block'
...
org-babel-expand-body:lang function needs to be implemented by every
language, and is used to expand the body of a code block for
execution or tangling
2010-04-23 10:09:57 -06:00
788779e16c
babel: typo in org-babel-get-rownames
2010-04-23 10:09:57 -06:00
c777e729fb
babel: bring R row- and col-names into line with others
2010-04-23 10:09:57 -06:00
bd3c85ed60
babel: add :rownames header arg for R
2010-04-23 10:09:57 -06:00
d5dd160b23
babel: bug fix in org-babel-get-colnames
2010-04-23 10:09:57 -06:00
b9aa92ba21
org-babel: splitting `org-babel-pick-name' into it's own function
...
also renaming org-babel-manicure-tables to org-babel-disassemble-tables
2010-04-23 10:09:57 -06:00
bfc93ca808
babel: added row/col-name support to all applicable languages
2010-04-23 10:09:57 -06:00
10b3da72fc
babel: adding row/col-names functions
...
adding a suite of functions to org-babel.el which can be used to
handle hlines, rownames, and columnnames in input tables. These
functions can be called from any org-babel-language.el file.
done in close collaboration with Dan Davison
2010-04-23 10:09:57 -06:00
0c8b86e9a9
org-babel: keep within 80 columns
...
this is exclusively whitespace and indentation changes, with the
goal of cleaning up the file, and keep all lines within 80 columns
2010-04-23 10:09:57 -06:00
927ff1125b
babel: `org-babel-ref-index-list' now converts trivial lists to scalars
...
Thanks to Darlan Cavalcante Moreira for this suggestion.
2010-04-21 09:35:13 -06:00
c6ea2a1457
Use overlay-in and overlay-at instead of compatibility functions
2010-04-20 12:17:06 +02:00
97e20048b2
Use `add-to-invisibility-spec' directly
2010-04-18 19:41:05 +02:00
b35b9914e6
Revert "Use `add-to-invisibility-spec' directly"
...
This reverts commit c2e5b13a2d
2010-04-18 19:38:10 +02:00
c2e5b13a2d
Use `add-to-invisibility-spec' directly
2010-04-18 19:26:30 +02:00
bb0ef787b7
Require calendar already on top level in org.el
2010-04-18 16:50:13 +02:00
f45e6a28b1
Use the normal overlay API, not Org's one
2010-04-18 16:49:58 +02:00
3652689944
org-mime: removed short string " xx " from semi syntax
2010-04-16 09:21:36 -06:00
3b5c85fb95
org-mime: WL is now fully supported -- thanks to Eric S. Fraga
2010-04-15 09:40:03 -06:00
a2769bef61
org-mime: bug fixes, thanks to Eric S Fraga and Andrew Hyatt for their debugging help
2010-04-14 09:12:41 -06:00
b617a457ae
org-mime: change `org-mime-org-export' to more closely mimic `org-run-like-in-org-mode'
2010-04-12 11:21:59 -06:00
70ba21e699
babel: new function `org-babel-tangle-publish' allows for tangling during project publish
2010-04-11 23:58:44 -06:00
7cbb35920d
org-babel-c: new header argument ":main no" allows inhibiting main wrap
2010-04-10 15:54:40 -06:00
99a07f1d4a
org-babel-c: cleaning up header arguments
2010-04-10 15:43:31 -06:00
0e8c9f7a49
org-babel: no longer over evaluating header arguments
2010-04-10 15:43:19 -06:00
3386a702f8
org-babel: all languages now returning lists as pure emacs-lisp, not quoted emacs-lisp
2010-04-10 15:15:06 -06:00
722dd7eb5c
org-mime: cleaned `org-mime-default-header' from text/plain exports
2010-04-10 15:15:05 -06:00
59d499ff51
babel: Allow table to end neatly with terminal hline
...
Prior to this, a terminal hline would leave dangling empty cells:
#+TBLNAME: A
|---+---+---|
| a | b | c |
|---+---+---|
#+begin_src emacs-lisp :var tab=A
tab
#+end_src
#+results:
|---+---+---|
| a | b | c |
|---+---+---|
| | | |
2010-04-10 16:49:40 -04:00
8c827ba5ba
babel: Allow output tables to start with 'hline
2010-04-10 16:12:28 -04:00
98b4ae28a9
babel: allow lisp quoted expansion of variable values when starting with `
2010-04-09 19:06:07 -06:00
8258daf439
added org-mime.el to contrib -- allows HTML email composition with Org-mode
...
see http://orgmode.org/worg/org-contrib/org-mime.php for
documentation
much thanks to everyone on the "using orgmode to send html mail"
thread (see http://thread.gmane.org/gmane.emacs.orgmode/23153 )
especially David Maus for ideas, discussion, and suggestions
2010-04-09 10:26:57 -06:00
f846663ce6
babel: Do not add indentation to perl code.
...
Thanks to Łukasz Stelmach.
2010-04-09 08:45:18 -04:00
0f83b2d203
babel: allow disabling of noweb expansion during tangling
2010-04-08 16:14:28 -04:00
38d6bf3f6c
babel: allow assigning of variables when preparing R session
...
This is already in place for other languages, but seems to have been
forgotten for R.
2010-04-08 15:26:08 -04:00
caaf755192
babel: org-babel-latex adjusts to the new org latex setup
2010-04-07 22:43:37 -06:00
e48b8bf577
babel: return string results from matlab as strings
...
Thanks to Bob Jansen
2010-04-07 18:44:58 -04:00
f03c981fc0
babel: return string results from octave as strings
...
Thanks to Darlan Cavalcante
2010-04-07 15:51:04 -04:00
8d405783cb
babel: safer modification of `call-process-region'
2010-04-04 17:15:12 -06:00
8ef104195f
babel: use wildcard "*" characters in `org-babel-ref-index-list' to index entire ranges
2010-04-02 08:46:13 -06:00
40a8933ba6
babel: allow R to produce svg format output
2010-04-01 18:45:59 -04:00
c1ee3cc3d9
Merge branch 'master' of git+ssh://repo.or.cz/srv/git/org-mode
2010-03-31 00:16:13 +02:00
28b1059f09
Snow Leopard compatibility for org-mac-iCal.el
2010-03-31 00:16:07 +02:00
3637efe647
babel: Don't use language major-mode when expanding noweb references
...
There is no longer any need for the language major mode.
2010-03-30 10:20:18 -04:00
e32c066874
babel: check that language major-mode is available during tangling
2010-03-30 10:20:10 -04:00
2675848d37
babel: org-babel-c now responds to :cmdline header argument
2010-03-29 12:26:53 -06:00
f2abb650fb
Add completions for checkbox targets
...
Add the new property values to the completion list.
2010-03-28 22:10:24 -04:00
e8a125bed7
babel: now taking headline properties into account for lob calls
2010-03-28 16:53:00 -06:00
a23ca4529f
babel: Get rid of parameter inheritance by reference blocks
2010-03-27 18:49:00 -04:00
36351d26a9
Merge branch 'master' of git://repo.or.cz/org-mode
2010-03-27 16:18:27 -04:00
47571965d4
babel: don't process emacs-lisp params twice
2010-03-27 15:59:53 -04:00
8ecc86d49e
babel: better variable initialization for org-babel-c
2010-03-27 08:20:38 -06:00
fc28dd538b
babel: shorter language names no longer shadow larger names
...
Previously "R" could overshadow "Ruby", and "C" could overshadow
"Clojure", causing blocks of the longer language name to fail to
load. This issue has now been fixed
2010-03-26 20:54:16 -06:00
22e4cd9b6d
babel: org-babel-c more robust, better error messages and c++ support
2010-03-26 19:35:31 -06:00
b61019489c
babel: org-babel-C now displays compilation error messages
2010-03-26 17:12:43 -06:00
e3fbc98b26
babel: removed errant reference to R from org-babel.el
2010-03-26 16:28:25 -06:00
17790c7dad
babel: limited initial support for C and similar languages
2010-03-26 16:28:23 -06:00
f400632f94
babel: when passing values from a table an extra '$' prefix forces literal
...
thanks to Maurizio Vitale for the suggestion. This allows literal
values to be passed to code blocks through `sbe' without forcing the
use of quotes inside the table.
2010-03-25 11:09:38 -06:00
727aa263cb
babel: src block regexps are more robust to embedded "[begin|end]_src" in block body
2010-03-22 15:19:33 -06:00
32bbd3f3bb
babel: variable references which look like lisp forms are now evaluated
...
for example, the following simple example
#+begin_src emacs-lisp :var two=(+ 1 1)
(sqrt two)
#+end_src
#+results:
: 1.4142135623730951
Or this more interesting usage, which pulls variable values from
headline properties
*** example headline w/property
:PROPERTIES:
:special: 89
:last-name: schulte
:END:
#+begin_src emacs-lisp :var special=(string-to-number (org-entry-get nil "special" t))
(+ special 1)
#+end_src
#+results:
: 90
#+begin_src emacs-lisp :var last-name=(org-entry-get nil "last-name" t))
(message "hello %s" last-name)
#+end_src
#+results:
: hello schulte
2010-03-22 15:19:32 -06:00
abf0a50d1b
babel: Ensure that inline code blocks produce string output on export
2010-03-19 10:08:16 -04:00
adb2f3f590
babel: Add octave and matlab support
2010-03-18 14:45:39 -04:00
Eric Schulte
Carsten Dominik
Bernt Hansen
Nicolas Goaziou
Dan Davison
Michael Sperber
Benjamin Andresen
Robert P. Goldman
Julien Barnier