87 lines
3.1 KiB
EmacsLisp
87 lines
3.1 KiB
EmacsLisp
;;; ob-stan.el --- Babel Functions for Stan -*- lexical-binding: t; -*-
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;; Copyright (C) 2015-2020 Free Software Foundation, Inc.
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;; Author: Kyle Meyer
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;; Keywords: literate programming, reproducible research
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;; Homepage: https://orgmode.org
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;; This file is part of GNU Emacs.
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;; GNU Emacs is free software: you can redistribute it and/or modify
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;; it under the terms of the GNU General Public License as published by
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;; the Free Software Foundation, either version 3 of the License, or
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;; (at your option) any later version.
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;; GNU Emacs is distributed in the hope that it will be useful,
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;; but WITHOUT ANY WARRANTY; without even the implied warranty of
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;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;; GNU General Public License for more details.
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;; You should have received a copy of the GNU General Public License
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;; along with GNU Emacs. If not, see <https://www.gnu.org/licenses/>.
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;;; Commentary:
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;; Org-Babel support for evaluating Stan [1] source code.
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;;
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;; Evaluating a Stan block can produce two different results.
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;;
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;; 1) Dump the source code contents to a file.
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;;
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;; This file can then be used as a variable in other blocks, which
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;; allows interfaces like RStan to use the model.
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;;
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;; 2) Compile the contents to a model file.
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;;
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;; This provides access to the CmdStan interface. To use this, set
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;; `org-babel-stan-cmdstan-directory' and provide a :file argument
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;; that does not end in ".stan".
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;;
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;; For more information and usage examples, visit
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;; https://orgmode.org/worg/org-contrib/babel/languages/ob-doc-stan.html
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;;
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;; [1] http://mc-stan.org/
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;;; Code:
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(require 'ob)
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(require 'org-compat)
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(defcustom org-babel-stan-cmdstan-directory nil
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"CmdStan source directory.
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Call \"make\" from this directory to compile the Stan block.
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When nil, executing Stan blocks dumps the content to a file."
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:group 'org-babel
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:type '(choice
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(directory :tag "Compilation directory")
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(const :tag "Dump to a file" nil)))
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(defvar org-babel-default-header-args:stan
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'((:results . "file")))
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(defun org-babel-execute:stan (body params)
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"Generate Stan file from BODY according to PARAMS.
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A :file header argument must be given. If
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`org-babel-stan-cmdstan-directory' is non-nil and the file name
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does not have a \".stan\" extension, save an intermediate
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\".stan\" file and compile the block to the named file.
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Otherwise, write the Stan code directly to the named file."
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(let ((file (expand-file-name
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(or (cdr (assq :file params))
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(user-error "Set :file argument to execute Stan blocks")))))
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(if (or (not org-babel-stan-cmdstan-directory)
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(string-match-p "\\.stan\\'" file))
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(with-temp-file file (insert body))
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(with-temp-file (concat file ".stan") (insert body))
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(let ((default-directory org-babel-stan-cmdstan-directory))
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(call-process-shell-command (concat "make " file))))
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nil)) ; Signal that output has been written to file.
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(defun org-babel-prep-session:stan (_session _params)
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"Return an error because Stan does not support sessions."
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(user-error "Stan does not support sessions"))
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(provide 'ob-stan)
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;;; ob-stan.el ends here
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