From 034d7df9dd3ca66a1e2a879ccec96f19606cad8d Mon Sep 17 00:00:00 2001 From: ndwarshuis Date: Fri, 30 Jul 2021 15:23:00 -0400 Subject: [PATCH] ENH add cd4 to grex data fig --- figures/grex_results.svg | 777 ++++++++++++++++++++++++++++++--------- tex/thesis.tex | 9 +- 2 files changed, 614 insertions(+), 172 deletions(-) diff --git a/figures/grex_results.svg b/figures/grex_results.svg index c20a013..16b3f3a 100644 --- a/figures/grex_results.svg +++ b/figures/grex_results.svg @@ -95,6 +95,34 @@ d="M 32.95,15.1 H 107.9 V 85.23 H 32.95 Z" id="path61242" /> + + + + + + + + + + + + @@ -143,7 +171,7 @@ + transform="matrix(1.3333333,0,0,-1.3333333,178.66669,143.66667)"> + transform="matrix(1.3333333,0,0,-1.3333333,9.466678,139.17334)"> c. + x="0.078125" + y="160.38156">c. + d. + id="g62174" + inkscape:label="total_cd4_phenotype" + transform="matrix(1.3333333,0,0,-1.3333333,182.01336,296.33335)"> + id="g62176"> + id="path62178" /> + id="g62180" /> + id="g62182" /> + id="g62184" /> + id="g62186" /> + id="g62188" /> + id="g62190" /> + id="g62192" /> + id="g62194"> + id="g62196" + clip-path="url(#clipPath62200)"> + id="path62202" /> + id="g62204" /> + id="g62206"> + id="g62208" + clip-path="url(#clipPath62212)"> + id="path62214" /> - - - - + id="path62216" /> + d="m 81.24,78.61 c 0,0.63 0.52,1.15 1.16,1.15 0.63,0 1.15,-0.52 1.15,-1.15 0,-0.64 -0.52,-1.16 -1.15,-1.16 -0.64,0 -1.16,0.52 -1.16,1.16" + style="fill:#000000;fill-opacity:1;fill-rule:nonzero;stroke:#000000;stroke-width:0.71;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:10;stroke-dasharray:none;stroke-opacity:1" + id="path62218" /> + d="m 91.93,73.21 c 0,0.63 0.52,1.15 1.16,1.15 0.63,0 1.15,-0.52 1.15,-1.15 0,-0.64 -0.52,-1.16 -1.15,-1.16 -0.64,0 -1.16,0.52 -1.16,1.16" + style="fill:#000000;fill-opacity:1;fill-rule:nonzero;stroke:#000000;stroke-width:0.71;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:10;stroke-dasharray:none;stroke-opacity:1" + id="path62220" /> + d="m 85.92,72.25 c 0,0.63 0.52,1.15 1.16,1.15 0.63,0 1.15,-0.52 1.15,-1.15 0,-0.64 -0.52,-1.16 -1.15,-1.16 -0.64,0 -1.16,0.52 -1.16,1.16" + style="fill:#000000;fill-opacity:1;fill-rule:nonzero;stroke:#000000;stroke-width:0.71;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:10;stroke-dasharray:none;stroke-opacity:1" + id="path62222" /> + d="m 86.62,75.19 c 0,0.64 0.52,1.16 1.16,1.16 0.63,0 1.15,-0.52 1.15,-1.16 0,-0.63 -0.52,-1.15 -1.15,-1.15 -0.64,0 -1.16,0.52 -1.16,1.15" + style="fill:#000000;fill-opacity:1;fill-rule:nonzero;stroke:#000000;stroke-width:0.71;stroke-linecap:round;stroke-linejoin:round;stroke-miterlimit:10;stroke-dasharray:none;stroke-opacity:1" + id="path62224" /> + + + + + + + + + + + + + + + Wilcoxon, p = 1.1e−05 + id="tspan62256">Wilcoxon, p = 1.1e−05 + id="g62260" /> + id="g62262" /> + id="g62264" /> + id="g62266" /> + id="g62268" /> + id="g62270" /> + id="g62272" /> + id="g62274" /> + id="g62276" /> + id="g62278" /> + id="g62280" /> + id="g62282" /> + id="g62284"> + id="path62286" /> + id="g62288" /> + id="g62290" /> + id="g62292"> 0.0% + id="tspan62294">0.0% 5.0% - 10.0% + id="tspan62298">10.0% 15.0% + id="tspan62302">20.0% 20.0% + id="tspan62306">30.0% 25.0% + id="tspan62310">40.0% + 50.0% + id="g62318" /> + id="g62320"> + id="path62322" /> + id="path62324" /> + id="path62326" /> + id="path62328" /> + id="path62330" /> + id="path62332" /> + id="g62334" /> + id="g62336" /> + id="g62338" /> + id="g62340" /> + id="g62342" /> + id="g62344" /> + id="g62346"> + id="path62348" /> + id="g62350" /> + id="g62352" /> + id="g62354"> + id="path62356" /> + id="path62358" /> + id="g62360" /> + id="g62362"> DMS - bead + id="tspan62364">bead + DMS + id="g62372" /> + id="g62374" /> + id="g62376" /> + id="g62378" /> + id="g62380" /> + id="g62382" /> + id="g62384" /> + id="g62386"> CD4+ Perc. 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(of CD3+) + id="g62777" /> + id="g62779" /> + id="g62781" /> + id="g62783" /> + id="g62785" /> + id="g62787" /> + id="g62789" /> + id="g62791" /> + id="g62793" /> + id="g62795" /> + id="g62797" /> + id="g62799" /> diff --git a/tex/thesis.tex b/tex/thesis.tex index 9bdc9b6..9ca9622 100644 --- a/tex/thesis.tex +++ b/tex/thesis.tex @@ -1658,15 +1658,18 @@ cells, which was why the \ptmemp{} was so low compared to other data \includegraphics{../figures/grex_results.png} \phantomsubcaption\label{fig:grex_results_fc} \phantomsubcaption\label{fig:grex_results_viability} - \phantomsubcaption\label{fig:grex_phenotype} + \phantomsubcaption\label{fig:grex_mem} + \phantomsubcaption\label{fig:grex_cd4} \endgroup \caption[Grex bioreactor results] {\glspl{dms} expand T cells robustly in Grex bioreactors. \subcap{fig:grex_results_fc}{Fold change of T cells over time.} \subcap{fig:grex_results_viability}{Viability of T cells over time.} - \subcap{fig:grex_results_viability}{\pthp{} of T cells after \SI{14}{\day} - of expansion.} + \subcap{fig:grex_mem}{\ptmemp{}} and + \subcap{fig:grex_cd4}{\pthp{}} of T cells after \SI{14}{\day} + of expansion. Significance tests were performed using the Wilcoxon + non-parametric test. } \label{fig:grex_results} \end{figure*}