ADD tables to aim 2a

tables/doe_runs.tex

@@ -0,0 +1,46 @@
+\begin{tabular}{ccccc}
+\\[-1.8ex]\hline 
+\hline \\[-1.8ex] 
+\\[-1.8ex] Dataset & Run & IL2 Conc (\si{\IU\per\ml}) & DMS Conc. (\si{\IU\per\ml})
+  & Functional \gls{mab} (\si{\percent}) \\
+\hline \\[-1.8ex]
+DOE & 1 & 30 & 500 & 100\\
+DOE & 2 & 20 & 2500 & 80\\
+DOE & 3 & 20 & 1500 & 100\\
+DOE & 4 & 20 & 1500 & 60\\
+DOE & 5 & 20 & 1500 & 100\\
+DOE & 6 & 30 & 2500 & 100\\
+DOE & 7 & 10 & 2500 & 60\\
+DOE & 8 & 20 & 2500 & 80\\
+DOE & 9 & 20 & 500 & 80\\
+DOE & 10 & 10 & 2500 & 100\\
+DOE & 11 & 30 & 1500 & 80\\
+DOE & 12 & 10 & 1500 & 80\\
+DOE & 13 & 30 & 1500 & 80\\
+DOE & 14 & 10 & 500 & 60\\
+DOE & 15 & 30 & 500 & 60\\
+DOE & 16 & 10 & 500 & 100\\
+DOE & 17 & 20 & 1500 & 60\\
+DOE & 18 & 30 & 2500 & 60\\
+ADOE & 1 & 40 & 500 & 100\\
+ADOE & 2 & 35 & 2000 & 100\\
+ADOE & 3 & 30 & 1500 & 100\\
+ADOE & 4 & 30 & 2500 & 100\\
+ADOE & 5 & 40 & 2500 & 100\\
+ADOE & 6 & 40 & 1500 & 100\\
+ADOE & 7 & 30 & 500 & 100\\
+ADOE & 8 & 35 & 2000 & 100\\
+ADOE & 9 & 35 & 1000 & 100\\
+ADOE & 10 & 30 & 1500 & 100\\
+ADOE & 11 & 35 & 3000 & 100\\
+ADOE & 12 & 30 & 2500 & 100\\
+ADOE & 13 & 40 & 1500 & 100\\
+ADOE & 14 & 40 & 500 & 100\\
+ADOE & 15 & 30 & 500 & 100\\
+ADOE & 16 & 35 & 1000 & 100\\
+ADOE & 17 & 35 & 3000 & 100\\
+ADOE & 18 & 40 & 3500 & 100\\
+ADOE & 19 & 40 & 2500 & 100\\
+ADOE & 20 & 40 & 3500 & 100\\
+\hline \\[-1.8ex] 
+\end{tabular} 

tables/model_results.tex

@@ -0,0 +1,27 @@
+\begin{tabular}{lccccccc} 
+\\[-1.8ex]\hline 
+\hline \\[-1.8ex] 
+\\[-1.8ex] Response/Predictors & SR & RF & GBM & CIF & LASSO & PLSR & SVM \\
+\hline \\[-1.8ex]
+\multicolumn{8}{l}{CD4:CD8 Ratio} \\ 
+PP+N4 & \SI{99}{\percent} & \SI{86.8}{\percent} & \SI{96.3}{\percent} & \SI{84.5}{\percent} & \SI{88.6}{\percent} & \SI{92.5}{\percent} & \SI{88.5}{\percent}\\
+PP+N6 & \SI{99}{\percent} & \SI{73.6}{\percent} & \SI{95.9}{\percent} & \SI{70.1}{\percent} & \SI{81.0}{\percent} & \SI{95.8}{\percent} & \SI{79.7}{\percent}\\
+PP+S6 & \SI{99}{\percent} & \SI{87.1}{\percent} & \SI{99.9}{\percent} & \SI{83.4}{\percent} & \SI{87.2}{\percent} & \SI{97.9}{\percent} & \SI{86.8}{\percent}\\
+PP+S6+N6 & \SI{99}{\percent} & \SI{85.5}{\percent} & \SI{95.3}{\percent} & \SI{83.4}{\percent} & \SI{92.9}{\percent} & \SI{99.7}{\percent} & \SI{90.5}{\percent}\\
+
+\hline \\
+\multicolumn{8}{l}{\ptmemh{} cells} \\ 
+PP+N4 & \SI{97}{\percent} & \SI{67.0}{\percent} & \SI{93.6}{\percent} & \SI{69.3}{\percent} & \SI{34.3}{\percent} & \SI{90.1}{\percent} & \SI{75.5}{\percent}\\
+PP+N6 & \SI{96}{\percent} & \SI{45.9}{\percent} & \SI{92.6}{\percent} & \SI{51.2}{\percent} & \SI{42.8}{\percent} & \SI{92.1}{\percent} & \SI{79.4}{\percent}\\
+PP+S6 & \SI{98}{\percent} & \SI{71.4}{\percent} & \SI{99.9}{\percent} & \SI{75.0}{\percent} & \SI{74.9}{\percent} & \SI{80.0}{\percent} & \SI{75.5}{\percent}\\
+PP+S6+N6 & \SI{98}{\percent} & \SI{68.2}{\percent} & \SI{95.6}{\percent} & \SI{74.4}{\percent} & \SI{72.5}{\percent} & \SI{81.7}{\percent} & \SI{77.0}{\percent}\\
+
+\hline \\
+\multicolumn{8}{l}{\ptmemh{} cells} \\ 
+PP+N4 & \SI{93}{\percent} & \SI{4.7}{\percent} & \SI{44.4}{\percent} & \SI{9.2}{\percent} & \SI{1.2}{\percent} & \SI{65.1}{\percent} & \SI{9.1}{\percent}\\
+PP+N6 & \SI{86}{\percent} & \SI{2.0}{\percent} & \SI{29.9}{\percent} & \SI{15.8}{\percent} & \SI{28.5}{\percent} & \SI{63.3}{\percent} & \SI{30.6}{\percent}\\
+PP+S6 & \SI{93}{\percent} & \SI{7.8}{\percent} & \SI{28.0}{\percent} & \SI{15.1}{\percent} & \SI{76.2}{\percent} & \SI{98.4}{\percent} & \SI{49.8}{\percent}\\
+PP+S6+N6 & \SI{93}{\percent} & \SI{0.3}{\percent} & \SI{32.7}{\percent} & \SI{9.8}{\percent} & \SI{51.5}{\percent} & \SI{96.4}{\percent} & \SI{37.8}{\percent}\\
+
+\hline \\[-1.8ex] 
+\end{tabular} 

tex/thesis.tex

@@ -1553,6 +1553,15 @@ provide these benefits.
 
 \subsection{DOE shows optimal conditions for expanded potent T cells}
 
+
+% TODO not all of these were actually use, explain why by either adding columns
+% or marking with an asterisk
+\begin{table}[!h] \centering
+  \caption{DOE Runs}
+  \label{tab:doe_runs}
+  \input{../tables/doe_runs.tex}
+\end{table}
+
 \begin{figure*}[ht!]
   \begingroup
 
@@ -1595,12 +1604,17 @@ provide these benefits.
   \label{fig:doe_responses}
 \end{figure*}
 
-% DOE regression tables
+% TODO add DOE regression tables
 
 % TODO this section header sucks
 \subsection{AI modeling reveals highly predictive species}
 
-% model summary table
+% TODO this table looks like crap, break it up into smaller tables
+\begin{table}[!h] \centering
+  \caption{Results for data-driven modeling}
+  \label{tab:mod_results}
+  \input{../tables/model_results.tex}
+\end{table}
 
 \begin{figure*}[ht!]
   \begingroup