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ADD tables to aim 2a

This commit is contained in:
Nathan Dwarshuis 2021-07-26 16:42:17 -04:00
parent 4682a2693e
commit 197aee093f
3 changed files with 89 additions and 2 deletions
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46
tables/doe_runs.tex Normal file
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\begin{tabular}{ccccc}
\\[-1.8ex]\hline
\hline \\[-1.8ex]
\\[-1.8ex] Dataset & Run & IL2 Conc (\si{\IU\per\ml}) & DMS Conc. (\si{\IU\per\ml})
& Functional \gls{mab} (\si{\percent}) \\
\hline \\[-1.8ex]
DOE & 1 & 30 & 500 & 100\\
DOE & 2 & 20 & 2500 & 80\\
DOE & 3 & 20 & 1500 & 100\\
DOE & 4 & 20 & 1500 & 60\\
DOE & 5 & 20 & 1500 & 100\\
DOE & 6 & 30 & 2500 & 100\\
DOE & 7 & 10 & 2500 & 60\\
DOE & 8 & 20 & 2500 & 80\\
DOE & 9 & 20 & 500 & 80\\
DOE & 10 & 10 & 2500 & 100\\
DOE & 11 & 30 & 1500 & 80\\
DOE & 12 & 10 & 1500 & 80\\
DOE & 13 & 30 & 1500 & 80\\
DOE & 14 & 10 & 500 & 60\\
DOE & 15 & 30 & 500 & 60\\
DOE & 16 & 10 & 500 & 100\\
DOE & 17 & 20 & 1500 & 60\\
DOE & 18 & 30 & 2500 & 60\\
ADOE & 1 & 40 & 500 & 100\\
ADOE & 2 & 35 & 2000 & 100\\
ADOE & 3 & 30 & 1500 & 100\\
ADOE & 4 & 30 & 2500 & 100\\
ADOE & 5 & 40 & 2500 & 100\\
ADOE & 6 & 40 & 1500 & 100\\
ADOE & 7 & 30 & 500 & 100\\
ADOE & 8 & 35 & 2000 & 100\\
ADOE & 9 & 35 & 1000 & 100\\
ADOE & 10 & 30 & 1500 & 100\\
ADOE & 11 & 35 & 3000 & 100\\
ADOE & 12 & 30 & 2500 & 100\\
ADOE & 13 & 40 & 1500 & 100\\
ADOE & 14 & 40 & 500 & 100\\
ADOE & 15 & 30 & 500 & 100\\
ADOE & 16 & 35 & 1000 & 100\\
ADOE & 17 & 35 & 3000 & 100\\
ADOE & 18 & 40 & 3500 & 100\\
ADOE & 19 & 40 & 2500 & 100\\
ADOE & 20 & 40 & 3500 & 100\\
\hline \\[-1.8ex]
\end{tabular}

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tables/model_results.tex Normal file
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\begin{tabular}{lccccccc}
\\[-1.8ex]\hline
\hline \\[-1.8ex]
\\[-1.8ex] Response/Predictors & SR & RF & GBM & CIF & LASSO & PLSR & SVM \\
\hline \\[-1.8ex]
\multicolumn{8}{l}{CD4:CD8 Ratio} \\
PP+N4 & \SI{99}{\percent} & \SI{86.8}{\percent} & \SI{96.3}{\percent} & \SI{84.5}{\percent} & \SI{88.6}{\percent} & \SI{92.5}{\percent} & \SI{88.5}{\percent}\\
PP+N6 & \SI{99}{\percent} & \SI{73.6}{\percent} & \SI{95.9}{\percent} & \SI{70.1}{\percent} & \SI{81.0}{\percent} & \SI{95.8}{\percent} & \SI{79.7}{\percent}\\
PP+S6 & \SI{99}{\percent} & \SI{87.1}{\percent} & \SI{99.9}{\percent} & \SI{83.4}{\percent} & \SI{87.2}{\percent} & \SI{97.9}{\percent} & \SI{86.8}{\percent}\\
PP+S6+N6 & \SI{99}{\percent} & \SI{85.5}{\percent} & \SI{95.3}{\percent} & \SI{83.4}{\percent} & \SI{92.9}{\percent} & \SI{99.7}{\percent} & \SI{90.5}{\percent}\\
\hline \\
\multicolumn{8}{l}{\ptmemh{} cells} \\
PP+N4 & \SI{97}{\percent} & \SI{67.0}{\percent} & \SI{93.6}{\percent} & \SI{69.3}{\percent} & \SI{34.3}{\percent} & \SI{90.1}{\percent} & \SI{75.5}{\percent}\\
PP+N6 & \SI{96}{\percent} & \SI{45.9}{\percent} & \SI{92.6}{\percent} & \SI{51.2}{\percent} & \SI{42.8}{\percent} & \SI{92.1}{\percent} & \SI{79.4}{\percent}\\
PP+S6 & \SI{98}{\percent} & \SI{71.4}{\percent} & \SI{99.9}{\percent} & \SI{75.0}{\percent} & \SI{74.9}{\percent} & \SI{80.0}{\percent} & \SI{75.5}{\percent}\\
PP+S6+N6 & \SI{98}{\percent} & \SI{68.2}{\percent} & \SI{95.6}{\percent} & \SI{74.4}{\percent} & \SI{72.5}{\percent} & \SI{81.7}{\percent} & \SI{77.0}{\percent}\\
\hline \\
\multicolumn{8}{l}{\ptmemh{} cells} \\
PP+N4 & \SI{93}{\percent} & \SI{4.7}{\percent} & \SI{44.4}{\percent} & \SI{9.2}{\percent} & \SI{1.2}{\percent} & \SI{65.1}{\percent} & \SI{9.1}{\percent}\\
PP+N6 & \SI{86}{\percent} & \SI{2.0}{\percent} & \SI{29.9}{\percent} & \SI{15.8}{\percent} & \SI{28.5}{\percent} & \SI{63.3}{\percent} & \SI{30.6}{\percent}\\
PP+S6 & \SI{93}{\percent} & \SI{7.8}{\percent} & \SI{28.0}{\percent} & \SI{15.1}{\percent} & \SI{76.2}{\percent} & \SI{98.4}{\percent} & \SI{49.8}{\percent}\\
PP+S6+N6 & \SI{93}{\percent} & \SI{0.3}{\percent} & \SI{32.7}{\percent} & \SI{9.8}{\percent} & \SI{51.5}{\percent} & \SI{96.4}{\percent} & \SI{37.8}{\percent}\\
\hline \\[-1.8ex]
\end{tabular}

18
tex/thesis.tex
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@ -1553,6 +1553,15 @@ provide these benefits.
\subsection{DOE shows optimal conditions for expanded potent T cells}
% TODO not all of these were actually use, explain why by either adding columns
% or marking with an asterisk
\begin{table}[!h] \centering
\caption{DOE Runs}
\label{tab:doe_runs}
\input{../tables/doe_runs.tex}
\end{table}
\begin{figure*}[ht!]
\begingroup
@ -1595,12 +1604,17 @@ provide these benefits.
\label{fig:doe_responses}
\end{figure*}
% DOE regression tables
% TODO add DOE regression tables
% TODO this section header sucks
\subsection{AI modeling reveals highly predictive species}
% model summary table
% TODO this table looks like crap, break it up into smaller tables
\begin{table}[!h] \centering
\caption{Results for data-driven modeling}
\label{tab:mod_results}
\input{../tables/model_results.tex}
\end{table}
\begin{figure*}[ht!]
\begingroup