ADD regression tables to integrin figures

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Nathan Dwarshuis 2021-07-31 12:57:17 -04:00
parent 38c24e90cc
commit 19d4df58ca
5 changed files with 3318 additions and 3538 deletions

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tables/integrin_1_reg.tex Normal file
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% Table created by stargazer v.5.2.2 by Marek Hlavac, Harvard University. E-mail: hlavac at fas.harvard.edu
% Date and time: Sat, Jul 31, 2021 - 12:17:04 PM
\begin{tabular}{@{\extracolsep{5pt}}lcc}
\\[-1.8ex]\hline
\hline \\[-1.8ex]
\\[-1.8ex] & \ptmemp{} \% & \pthp{} \\
\hline \\[-1.8ex]
CD49a & 0.034 & 34.500 \\
CD49b & 0.024 & 397.000 \\
Constant & 0.313$^{***}$ & 1,233.250$^{***}$ \\
\hline \\[-1.8ex]
Observations & 8 & 8 \\
R$^{2}$ & 0.222 & 0.270 \\
Adjusted R$^{2}$ & $-$0.089 & $-$0.022 \\
\hline
\hline \\[-1.8ex]
\textit{Note:} & \multicolumn{2}{r}{$^{*}$p$<$0.1; $^{**}$p$<$0.05; $^{***}$p$<$0.01} \\
\end{tabular}

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tables/integrin_2_reg.tex Normal file
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% Table created by stargazer v.5.2.2 by Marek Hlavac, Harvard University. E-mail: hlavac at fas.harvard.edu
% Date and time: Sat, Jul 31, 2021 - 12:26:08 PM
\begin{tabular}{@{\extracolsep{5pt}}lcc}
\\[-1.8ex]\hline
\hline \\[-1.8ex]
\\[-1.8ex] & \ptmemp{} & \pthp{} \\
\hline \\[-1.8ex]
CD49a & 0.006 & $-$0.006 \\
CD49b & 0.007 & $-$0.015 \\
Constant & 0.105$^{***}$ & 0.272$^{***}$ \\
\hline \\[-1.8ex]
Observations & 12 & 12 \\
R$^{2}$ & 0.082 & $-$0.153 \\
\hline
\hline \\[-1.8ex]
\textit{Note:} & \multicolumn{2}{r}{$^{*}$p$<$0.1; $^{**}$p$<$0.05; $^{***}$p$<$0.01} \\
\end{tabular}

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@ -2984,11 +2984,19 @@ them to grow better in the \gls{dms} system.
time with each blocking condition.}
\subcap{fig:inegrin_1_mem}{\ptmemp{} at day 14 for each blocked condition.}
\subcap{fig:inegrin_1_cd49}{\gls{a2b1} and \gls{a2b2} expression over time.}
`A' and `B' refer to the inclusion of \anti{\gls{a2b1}} or \anti{\gls{a2b2}}
respectively.
}
\label{fig:integrin_1}
\end{figure*}
% TABLE add regression table showing the results from this analysis
% RESULT alude to these tables
\begin{table}[!h] \centering
\caption{Linear regression for day 14 phenotype shown in \cref{fig:integrin_1}}
\label{tab:integrin_1_reg}
\input{../tables/integrin_1_reg.tex}
\end{table}
We tested this hypothesis by adding blocking \glspl{mab} against \gls{a2b1}
and/or \gls{a2b2} to running T cell cultures activated using the \glspl{dms}.
@ -3016,10 +3024,18 @@ of the groups (\cref{fig:inegrin_1_mem}). We also noted that \gls{a2b1} and
\subcap{fig:inegrin_1_fc}{Fold change of \gls{dms}-activated T cell over
time with each blocking condition.}
\subcap{fig:inegrin_1_mem}{\ptmemp{} at day 14 for each blocked condition.}
`A' and `B' refer to the inclusion of \anti{\gls{a2b1}} or \anti{\gls{a2b2}}
respectively.
}
\label{fig:integrin_2}
\end{figure*}
\begin{table}[!h] \centering
\caption{Linear regression for day 14 phenotype shown in \cref{fig:integrin_2}}
\label{tab:integrin_2_reg}
\input{../tables/integrin_2_reg.tex}
\end{table}
Since this last experiment gave a negative result, we decided to hit \gls{a2b1}
and \gls{a2b2} harder by adding blocking \glspl{mab} at more timepoints between
day 0 and day 6, hypothesizing that the majority of the signaling would be