ndwarshuis
/
phd_thesis
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

FIX order and annotations in spade figure

This commit is contained in:
Nathan Dwarshuis 2021-07-30 16:39:21 -04:00
parent 20835d9579
commit 2547ca8a6b
2 changed files with 831 additions and 5108 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

5929
figures/add_remove_spade.svg
View File

File diff suppressed because one or more lines are too long
Side by Side Swipe Overlay

Before

Width:  |  Height:  |  Size: 404 KiB

After

Width:  |  Height:  |  Size: 418 KiB

10
tex/thesis.tex
View File

@ -2877,16 +2877,14 @@ are fundamentally altered by changing the number of \glspl{dms} temporally.
\label{fig:spade_gates} \label{fig:spade_gates}
\end{figure*} \end{figure*}
% TODO this needs some better annotations
% TODO put the quant graph before the tsne stuff
\begin{figure*}[ht!] \begin{figure*}[ht!]
\begingroup \begingroup
\includegraphics{../figures/add_remove_spade.png} \includegraphics{../figures/add_remove_spade.png}
\phantomsubcaption\label{fig:spade_msts} \phantomsubcaption\label{fig:spade_msts}
\phantomsubcaption\label{fig:spade_quant}
\phantomsubcaption\label{fig:spade_tsne_all} \phantomsubcaption\label{fig:spade_tsne_all}
\phantomsubcaption\label{fig:spade_tsne_stem} \phantomsubcaption\label{fig:spade_tsne_stem}
\phantomsubcaption\label{fig:spade_quant}
\endgroup \endgroup
\caption[SPADE and tSNE analysis temporally-modified DMS concentration] \caption[SPADE and tSNE analysis temporally-modified DMS concentration]
@ -2896,13 +2894,13 @@ are fundamentally altered by changing the number of \glspl{dms} temporally.
\subcap{fig:spade_msts}{SPADE plots of CD4, CD45RA, CD27, and CD45RO \subcap{fig:spade_msts}{SPADE plots of CD4, CD45RA, CD27, and CD45RO
expression on T cells. All cells from the added, removed, or no change expression on T cells. All cells from the added, removed, or no change
groups were pooled and clustered at once.} groups were pooled and clustered at once.}
\subcap{fig:spade_quant}{T cells from SPADE plots clustered by expression in
(\subref{fig:spade_msts}) quantified against total cell number from each
group.}
\subcap{fig:spade_tsne_all}{\gls{tsne} plots of all cells pooled from all \subcap{fig:spade_tsne_all}{\gls{tsne} plots of all cells pooled from all
groups.} groups.}
\subcap{fig:spade_tsne_stem}{\gls{tsne} plots of T cells from all groups \subcap{fig:spade_tsne_stem}{\gls{tsne} plots of T cells from all groups
manually gated on \cdp{8}\cdp{27}\cdp{45RO}.} manually gated on \cdp{8}\cdp{27}\cdp{45RO}.}
\subcap{fig:spade_quant}{T cells from SPADE plots clustered by expression in
(\subref{fig:spade_msts}) quantified against total cell number from each
group.}
} }
\label{fig:spade} \label{fig:spade}
\end{figure*} \end{figure*}