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FIX order and annotations in spade figure

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Nathan Dwarshuis 2021-07-30 16:39:21 -04:00
parent 20835d9579
commit 2547ca8a6b
2 changed files with 831 additions and 5108 deletions
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figures/add_remove_spade.svg
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tex/thesis.tex
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@ -2877,16 +2877,14 @@ are fundamentally altered by changing the number of \glspl{dms} temporally.
\label{fig:spade_gates}
\end{figure*}
% TODO this needs some better annotations
% TODO put the quant graph before the tsne stuff
\begin{figure*}[ht!]
\begingroup
\includegraphics{../figures/add_remove_spade.png}
\phantomsubcaption\label{fig:spade_msts}
\phantomsubcaption\label{fig:spade_quant}
\phantomsubcaption\label{fig:spade_tsne_all}
\phantomsubcaption\label{fig:spade_tsne_stem}
\phantomsubcaption\label{fig:spade_quant}
\endgroup
\caption[SPADE and tSNE analysis temporally-modified DMS concentration]
@ -2896,13 +2894,13 @@ are fundamentally altered by changing the number of \glspl{dms} temporally.
\subcap{fig:spade_msts}{SPADE plots of CD4, CD45RA, CD27, and CD45RO
expression on T cells. All cells from the added, removed, or no change
groups were pooled and clustered at once.}
\subcap{fig:spade_quant}{T cells from SPADE plots clustered by expression in
(\subref{fig:spade_msts}) quantified against total cell number from each
group.}
\subcap{fig:spade_tsne_all}{\gls{tsne} plots of all cells pooled from all
groups.}
\subcap{fig:spade_tsne_stem}{\gls{tsne} plots of T cells from all groups
manually gated on \cdp{8}\cdp{27}\cdp{45RO}.}
\subcap{fig:spade_quant}{T cells from SPADE plots clustered by expression in
(\subref{fig:spade_msts}) quantified against total cell number from each
group.}
}
\label{fig:spade}
\end{figure*}