ADD outline tex file

This commit is contained in:
Nathan Dwarshuis 2021-07-09 12:39:33 -04:00
parent 8228bcf9c0
commit 7aed0412ca
4 changed files with 233 additions and 6 deletions

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!*.bbl
!*.glo
!src
src/*
!src/*.tex
!src/*.bib
!src/*.bbl
!src/*.glo
!tex
tex/*
!tex/*.tex
!tex/*.bib
!tex/*.bbl
!tex/*.glo

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tex/thesis.glo Normal file
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\documentclass[twocolumn]{article}
\usepackage[top=0.75in,left=0.75in,right=0.75in,bottom=0.9in]{geometry}
\usepackage{siunitx}
\usepackage[acronym]{glossaries}
\usepackage[T1]{fontenc}
\usepackage{enumitem}
\usepackage{titlesec}
\usepackage{titlecaps}
\usepackage{upgreek}
\usepackage{graphicx}
\usepackage{subcaption}
\usepackage{nth}
\usepackage[capitalize]{cleveref}
\usepackage[version=4]{mhchem}
\usepackage{pgfgantt}
\titleformat{\section}[block]{\bfseries\large}{}{0pt}{\uppercase}
\titleformat{\subsection}[block]{\bfseries\large}{}{0pt}{\titlecap}
\titleformat{\subsubsection}[block]{\itshape\large}{}{0pt}{\titlecap}
\titleformat{\paragraph}[runin]{\bfseries\itshape}{}{0pt}{\titlecap}
\setlist[description]{font=$\bullet$~\textbf\normalfont}
\sisetup{per-mode=symbol,list-units=single}
\DeclareSIUnit\activityunit{U}
\DeclareSIUnit\carrier{carriers}
\DeclareSIUnit\cell{cells}
\DeclareSIUnit\ab{mAbs}
\DeclareSIUnit\molar{M}
\DeclareSIUnit\gforce{\times{} g}
% add acronyms here
\renewcommand{\glossarysection}[2][]{} % remove glossary title
\makeglossaries
\newacronym{act}{ACT}{adoptive cell therapies}
\begin{document}
\begin{titlepage}
\begin{center}
\huge\textbf{Optimizing T Cell Manufacturing and Quality Using
Functionalized Degradable Microscaffolds}
\vfill
\LARGE Nathan John Dwarshuis, B.S. \\
\vspace{1.5em}
\Large PhD Thesis \\
Doctor of Philosophy in Biomedical Engineering \\
Georgia Institute of Technology and Emory University
\vspace{1.5em}
\large\today
\vfill
\end{center}
\large{
\noindent
Committee Members
\vspace{1.5em}
\noindent
Dr. Krishnendu Roy (Advisor) \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University
\vspace{1.5em}
\noindent
Dr. Madhav Dhodapkar \\
Department of Hematology and Medical Oncology, Emory University
\vspace{1.5em}
\noindent
Dr. Melissa Kemp \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University
\vspace{1.5em}
\noindent
Dr. Wilbur Lam \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University
\vspace{1.5em}
\noindent
Dr. Sakis Mantalaris \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University }
\end{titlepage}
\onecolumn \pagenumbering{roman}
\clearpage
% TODO
Insert witty quote here
\clearpage
\section*{acknowledgements}
Thank you to Lex Fridman and Devin Townsend for being awesome and inspirational.
\clearpage
\section*{abstract}
Insert abstract here.
\clearpage
\tableofcontents
\clearpage
\listoffigures
\clearpage
\listoftables
\clearpage
\twocolumn
\section*{acronyms}
\printglossary[type=\acronymtype]
\clearpage
\pagenumbering{arabic}
\clearpage
\section{introduction}
\subsection*{overview}
Insert overview here
\subsection*{hypothesis}
Insert hypothesis here
\subsection*{specific aims}
\subsubsection*{aim 1}
\subsubsection*{aim 2}
\subsubsection*{aim 3}
\subsection*{outline}
\subsubsection*{Aim 1}
Aim 1
\subsubsection*{Aim 2}
Aim 2
\subsubsection*{Aim 3}
Aim 3
\section{background and significance}
\subsubsection*{background}
\subsubsection*{current T cell manufacturing technologies}
bla bla
\subsection*{strategies to optimize cell manufacturing}
bla bla
\subsubsection*{strategies to characterize cell manufacturing}
bla bla
\subsection{Innovation}
\section{aim 1}
\subsection{introduction}
\subsection{methods}
\subsection{results}
\subsection{discussion}
\section{Aim 2}
\subsection{introduction}
\subsection{methods}
\subsection{results}
\subsection{discussion}
\section{Aim 3}
\subsection{introduction}
\subsection{methods}
\subsection{results}
\subsection{discussion}
\section{conclusions and future work}
\subsection{conclusions}
\subsection{future work}
\onecolumn
\clearpage
% TODO some people put appendices here....not sure if I need to
\section{References}
\renewcommand{\section}[2]{} % noop the original bib section header
\bibliography{../proposal}
\bibliographystyle{naturemag}
\end{document}