ADD outline tex file
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!*.bbl
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!*.glo
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!src
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src/*
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!src/*.tex
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!src/*.bib
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!src/*.bbl
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!src/*.glo
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!tex
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tex/*
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!tex/*.tex
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!tex/*.bib
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!tex/*.bbl
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!tex/*.glo
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\documentclass[twocolumn]{article}
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\usepackage[top=0.75in,left=0.75in,right=0.75in,bottom=0.9in]{geometry}
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\usepackage{siunitx}
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\usepackage[acronym]{glossaries}
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\usepackage[T1]{fontenc}
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\usepackage{enumitem}
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\usepackage{titlesec}
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\usepackage{titlecaps}
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\usepackage{upgreek}
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\usepackage{graphicx}
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\usepackage{subcaption}
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\usepackage{nth}
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\usepackage[capitalize]{cleveref}
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\usepackage[version=4]{mhchem}
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\usepackage{pgfgantt}
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\titleformat{\section}[block]{\bfseries\large}{}{0pt}{\uppercase}
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\titleformat{\subsection}[block]{\bfseries\large}{}{0pt}{\titlecap}
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\titleformat{\subsubsection}[block]{\itshape\large}{}{0pt}{\titlecap}
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\titleformat{\paragraph}[runin]{\bfseries\itshape}{}{0pt}{\titlecap}
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\setlist[description]{font=$\bullet$~\textbf\normalfont}
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\sisetup{per-mode=symbol,list-units=single}
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\DeclareSIUnit\activityunit{U}
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\DeclareSIUnit\carrier{carriers}
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\DeclareSIUnit\cell{cells}
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\DeclareSIUnit\ab{mAbs}
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\DeclareSIUnit\molar{M}
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\DeclareSIUnit\gforce{\times{} g}
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% add acronyms here
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\renewcommand{\glossarysection}[2][]{} % remove glossary title
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\makeglossaries
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\newacronym{act}{ACT}{adoptive cell therapies}
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\begin{document}
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\begin{titlepage}
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\begin{center}
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\huge\textbf{Optimizing T Cell Manufacturing and Quality Using
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Functionalized Degradable Microscaffolds}
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\vfill
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\LARGE Nathan John Dwarshuis, B.S. \\
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\vspace{1.5em}
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\Large PhD Thesis \\
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Doctor of Philosophy in Biomedical Engineering \\
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Georgia Institute of Technology and Emory University
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\vspace{1.5em}
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\large\today
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\vfill
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\end{center}
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\large{
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\noindent
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Committee Members
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\vspace{1.5em}
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\noindent
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Dr. Krishnendu Roy (Advisor) \\
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Wallace H. Coulter Department of Biomedical Engineering, Georgia
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Institute of Technology and Emory University
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\vspace{1.5em}
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\noindent
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Dr. Madhav Dhodapkar \\
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Department of Hematology and Medical Oncology, Emory University
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\vspace{1.5em}
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\noindent
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Dr. Melissa Kemp \\
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Wallace H. Coulter Department of Biomedical Engineering, Georgia
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Institute of Technology and Emory University
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\vspace{1.5em}
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\noindent
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Dr. Wilbur Lam \\
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Wallace H. Coulter Department of Biomedical Engineering, Georgia
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Institute of Technology and Emory University
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\vspace{1.5em}
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\noindent
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Dr. Sakis Mantalaris \\
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Wallace H. Coulter Department of Biomedical Engineering, Georgia
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Institute of Technology and Emory University }
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\end{titlepage}
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\onecolumn \pagenumbering{roman}
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\clearpage
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% TODO
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Insert witty quote here
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\clearpage
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\section*{acknowledgements}
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Thank you to Lex Fridman and Devin Townsend for being awesome and inspirational.
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\clearpage
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\section*{abstract}
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Insert abstract here.
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\clearpage
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\tableofcontents
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\clearpage
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\listoffigures
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\clearpage
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\listoftables
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\clearpage
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\twocolumn
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\section*{acronyms}
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\printglossary[type=\acronymtype]
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\clearpage
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\pagenumbering{arabic}
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\clearpage
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\section{introduction}
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\subsection*{overview}
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Insert overview here
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\subsection*{hypothesis}
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Insert hypothesis here
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\subsection*{specific aims}
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\subsubsection*{aim 1}
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\subsubsection*{aim 2}
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\subsubsection*{aim 3}
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\subsection*{outline}
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\subsubsection*{Aim 1}
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Aim 1
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\subsubsection*{Aim 2}
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Aim 2
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\subsubsection*{Aim 3}
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Aim 3
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\section{background and significance}
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\subsubsection*{background}
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\subsubsection*{current T cell manufacturing technologies}
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bla bla
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\subsection*{strategies to optimize cell manufacturing}
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bla bla
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\subsubsection*{strategies to characterize cell manufacturing}
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bla bla
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\subsection{Innovation}
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\section{aim 1}
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\subsection{introduction}
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\subsection{methods}
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\subsection{results}
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\subsection{discussion}
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\section{Aim 2}
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\subsection{introduction}
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\subsection{methods}
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\subsection{results}
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\subsection{discussion}
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\section{Aim 3}
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\subsection{introduction}
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\subsection{methods}
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\subsection{results}
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\subsection{discussion}
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\section{conclusions and future work}
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\subsection{conclusions}
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\subsection{future work}
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\onecolumn
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\clearpage
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% TODO some people put appendices here....not sure if I need to
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\section{References}
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\renewcommand{\section}[2]{} % noop the original bib section header
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\bibliography{../proposal}
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\bibliographystyle{naturemag}
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\end{document}
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