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FIX formatting issues per gt guidelines

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Nathan Dwarshuis 2021-09-07 20:04:23 -04:00
parent 4fbfa67ea8
commit d0c338cf93
2 changed files with 39 additions and 19 deletions
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9
tex/references.bib
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@ -2794,6 +2794,15 @@ CONCLUSIONS: We developed a simplified, semi-closed system for the initial selec
publisher = {American Chemical Society ({ACS})}, publisher = {American Chemical Society ({ACS})},
} }
@Book{Pearl2018,
author = {Pearl, Judea},
publisher = {Basic Books},
title = {The Book of Why: The New Science of Cause and Effect},
year = {2018},
address = {New York},
isbn = {046509760X},
}
@Comment{jabref-meta: databaseType:bibtex;} @Comment{jabref-meta: databaseType:bibtex;}
@Comment{jabref-meta: grouping: @Comment{jabref-meta: grouping:

45
tex/thesis.tex
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@ -111,6 +111,9 @@
\renewcommand{\cftloftitlefont}{\hspace*{\fill}\Large\bfseries} \renewcommand{\cftloftitlefont}{\hspace*{\fill}\Large\bfseries}
\renewcommand{\cftafterloftitle}{\hspace*{\fill}} \renewcommand{\cftafterloftitle}{\hspace*{\fill}}
\setlength{\cftfignumwidth}{0.5in}
\setlength{\cfttabnumwidth}{0.5in}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% acronyms for the lazy % acronyms for the lazy
% %
@ -389,6 +392,8 @@
\begin{document} \begin{document}
\pagenumbering{gobble}
\begin{titlepage} \begin{titlepage}
\begin{mytitlepage} \begin{mytitlepage}
\mytitle{} \mytitle{}
@ -406,7 +411,7 @@
\vspace{1.5em} \vspace{1.5em}
Nathan John Dwarshuis, B.S. \\ Nathan John Dwarshuis \\
\vfill \vfill
@ -418,7 +423,7 @@
\vfill \vfill
Georgia Institute of Technology and Emory University \\ Georgia Institute of Technology and Emory University \\
August 2021 December 2021
\vfill \vfill
@ -427,7 +432,8 @@
\end{mytitlepage} \end{mytitlepage}
\end{titlepage} \end{titlepage}
\onecolumn \pagenumbering{roman}
\onecolumn
\clearpage \clearpage
\begin{mytitlepage} \begin{mytitlepage}
\mytitle{} \mytitle{}
@ -484,18 +490,24 @@
\vspace*{\fill} \vspace*{\fill}
\begin{quote} \begin{center}
You cannot answer a question that you cannot ask, and you cannot ask a You cannot answer a question that you cannot ask, and you cannot ask a
question for which you have no words. question for which you have no words.
\hfill \textit{-- Judea Pearl} \medskip
\end{quote}
\textit{Judea Pearl -- The Book of Why}
\nocite{Pearl2018}
\end{center}
\vspace{1in} \vspace{1in}
\vspace*{\fill} \vspace*{\fill}
\clearpage \clearpage
\pagenumbering{roman}
\chapter*{ACKNOWLEDGEMENTS} \chapter*{ACKNOWLEDGEMENTS}
\addcontentsline{toc}{chapter}{ACKNOWLEDGMENTS} \addcontentsline{toc}{chapter}{ACKNOWLEDGMENTS}
@ -510,7 +522,7 @@ for assisting with the animal studies, and Miguel Armenta Ochoa and Ritika Jain
for their assistance as well as their ideas for new directions of this work as for their assistance as well as their ideas for new directions of this work as
they continue it beyond my tenure. I would also like to thank the undergraduates they continue it beyond my tenure. I would also like to thank the undergraduates
and high school students I had the pleasure of mentoring, Anokhi Patel, Kate and high school students I had the pleasure of mentoring, Anokhi Patel, Kate
Richardson, Zahra Mousavi Karimi, Sambhav Jain, Lauren Bailey. Richardson, Zahra Mousavi Karimi, Sambhav Jain, and Lauren Bailey.
Beyond the Roy lab, I should thank the Cell Manufacturing Technologies (CMaT) Beyond the Roy lab, I should thank the Cell Manufacturing Technologies (CMaT)
family at large, especially our collaborators Art Edison, Max Colonna, Wandaliz family at large, especially our collaborators Art Edison, Max Colonna, Wandaliz
@ -522,7 +534,7 @@ Aaron Lifland, and Paramita Chatterjee.
Finally, I would like to thank my friends and family for their unconditional Finally, I would like to thank my friends and family for their unconditional
support throughout this process, as well as Arch Enemy and Megadeth support throughout this process, as well as Arch Enemy and Megadeth
for obvious reasons :) because reasons.
\clearpage \clearpage
@ -530,13 +542,13 @@ for obvious reasons :)
\clearpage \clearpage
\listoffigures \listoftables
\addcontentsline{toc}{chapter}{LIST OF FIGURES} \addcontentsline{toc}{chapter}{LIST OF TABLES}
\clearpage \clearpage
\listoftables \listoffigures
\addcontentsline{toc}{chapter}{LIST OF TABLES} \addcontentsline{toc}{chapter}{LIST OF FIGURES}
\clearpage \clearpage
@ -548,9 +560,6 @@ ABBREVIATIONS,style=index]
\printglossary[type=symbolslist,title=LIST OF SYMBOLS,toctitle=LIST OF SYMBOLS, \printglossary[type=symbolslist,title=LIST OF SYMBOLS,toctitle=LIST OF SYMBOLS,
style=index] style=index]
\clearpage
\pagenumbering{arabic}
\clearpage \clearpage
\chapter*{summary} \chapter*{summary}
@ -582,6 +591,8 @@ method which can be utilized at scale for a clinical trial and beyond.
\clearpage \clearpage
\pagenumbering{arabic}
\chapter{INTRODUCTION} \chapter{INTRODUCTION}
\section*{overview} \section*{overview}
@ -1414,7 +1425,7 @@ bead-based T cell expansion technology\footnote{adapted from \dmspaper{}}.
\includegraphics{../figures/dms_flowchart.png} \includegraphics{../figures/dms_flowchart.png}
\endgroup \endgroup
\caption[\gls{dms} Flowchart]{Overview of \gls{dms} manufacturing process.} \caption[\Acrshort{dms} Flowchart]{Overview of \gls{dms} manufacturing process.}
\label{fig:dms_flowchart} \label{fig:dms_flowchart}
\end{figure*} \end{figure*}
@ -2552,7 +2563,7 @@ tissue-culture plates.
\includegraphics{../figures/nonstick.png} \includegraphics{../figures/nonstick.png}
\endgroup \endgroup
\caption[\glspl{mab} do not detach from \glspl{dms}] \caption[\acrshort{mab} do not detach from \glspl{dms}]
{\glspl{mab} do not detach from microcarriers onto T cells in a detectable {\glspl{mab} do not detach from microcarriers onto T cells in a detectable
manner. Plots are representative manufacturing runs harvest after manner. Plots are representative manufacturing runs harvest after
\SI{14}{\day} of expansion and stained with \anti{\gls{igg}}. \SI{14}{\day} of expansion and stained with \anti{\gls{igg}}.