diff --git a/tex/thesis.tex b/tex/thesis.tex index f77d3f7..5a45571 100644 --- a/tex/thesis.tex +++ b/tex/thesis.tex @@ -1,5 +1,6 @@ -\documentclass[twocolumn]{article} -\usepackage[top=0.75in,left=0.75in,right=0.75in,bottom=0.9in]{geometry} +% \documentclass[twocolumn]{article} +\documentclass{report} +\usepackage[top=1in,left=1.5in,right=1in,bottom=1in]{geometry} \usepackage{siunitx} \usepackage[acronym]{glossaries} \usepackage[T1]{fontenc} @@ -17,10 +18,12 @@ \doublespacing -\titleformat{\section}[block]{\bfseries\large}{}{0pt}{\uppercase} -\titleformat{\subsection}[block]{\bfseries\large}{}{0pt}{\titlecap} -\titleformat{\subsubsection}[block]{\itshape\large}{}{0pt}{\titlecap} -\titleformat{\paragraph}[runin]{\bfseries\itshape}{}{0pt}{\titlecap} +\titleformat{\chapter}[block]{\filcenter\bfseries\large} +{\MakeUppercase{\chaptertitlename} \thechapter: }{0pt}{\uppercase} +% \titleformat{\chapter}[block]{\filcenter\bfseries\large}{}{0pt}{\uppercase} +\titleformat{\section}[block]{\bfseries\large}{}{0pt}{\titlecap} +\titleformat{\subsection}[block]{\itshape\large}{}{0pt}{\titlecap} +\titleformat{\subsubsection}[runin]{\bfseries\itshape}{}{0pt}{\titlecap} \setlist[description]{font=$\bullet$~\textbf\normalfont} @@ -49,84 +52,95 @@ \begin{titlepage} \begin{singlespace} \begin{center} - - \huge\textbf{Optimizing T Cell Manufacturing and Quality Using + \Large{ + \textbf{Optimizing T Cell Manufacturing and Quality Using Functionalized Degradable Microscaffolds} \vfill - \LARGE Nathan John Dwarshuis, B.S. \\ + A Dissertation \\ + Presented to \\ + The Academic Faculty \\ \vspace{1.5em} - \Large PhD Thesis \\ - Doctor of Philosophy in Biomedical Engineering \\ - Georgia Institute of Technology and Emory University + by \vspace{1.5em} - \large\today + Nathan John Dwarshuis, B.S. \\ \vfill + In Partial Fulfillment \\ + of the Requirements for the Degree \\ + Doctor of Philosophy in Biomedical Engineering in the \\ + Wallace H. Coulter Department of Biomedical Engineering + + \vfill + + Georgia Institute of Technology and Emory University \\ + August 2021 + + \vfill + + COPYRIGHT \copyright{} BY NATHAN J. DWARSHUIS + } \end{center} - \large{ + % \large{ - \noindent - Committee Members + % \noindent + % Committee Members - \vspace{1.5em} + % \vspace{1.5em} - \noindent - Dr. Krishnendu Roy (Advisor) \\ - Wallace H. Coulter Department of Biomedical Engineering, Georgia - Institute of Technology and Emory University + % \noindent + % Dr. Krishnendu Roy (Advisor) \\ + % Wallace H. Coulter Department of Biomedical Engineering, Georgia + % Institute of Technology and Emory University - \vspace{1.5em} + % \vspace{1.5em} - \noindent - Dr. Madhav Dhodapkar \\ - Department of Hematology and Medical Oncology, Emory University + % \noindent + % Dr. Madhav Dhodapkar \\ + % Department of Hematology and Medical Oncology, Emory University - \vspace{1.5em} + % \vspace{1.5em} - \noindent - Dr. Melissa Kemp \\ - Wallace H. Coulter Department of Biomedical Engineering, Georgia - Institute of Technology and Emory University + % \noindent + % Dr. Melissa Kemp \\ + % Wallace H. Coulter Department of Biomedical Engineering, Georgia + % Institute of Technology and Emory University - \vspace{1.5em} + % \vspace{1.5em} - \noindent - Dr. Wilbur Lam \\ - Wallace H. Coulter Department of Biomedical Engineering, Georgia - Institute of Technology and Emory University + % \noindent + % Dr. Wilbur Lam \\ + % Wallace H. Coulter Department of Biomedical Engineering, Georgia + % Institute of Technology and Emory University - \vspace{1.5em} + % \vspace{1.5em} - \noindent - Dr. Sakis Mantalaris \\ - Wallace H. Coulter Department of Biomedical Engineering, Georgia - Institute of Technology and Emory University } + % \noindent + % Dr. Sakis Mantalaris \\ + % Wallace H. Coulter Department of Biomedical Engineering, Georgia + % Institute of Technology and Emory University } \end{singlespace} \end{titlepage} \onecolumn \pagenumbering{roman} \clearpage -% TODO -Insert witty quote here - -\clearpage - -\section*{acknowledgements} +\chapter*{acknowledgements} +\addcontentsline{toc}{chapter}{acknowledgements} Thank you to Lex Fridman and Devin Townsend for being awesome and inspirational. \clearpage -\section*{abstract} +\chapter*{summary} +\addcontentsline{toc}{chapter}{summary} \Gls{act} using \gls{car} T cells have shown promise in treating cancer, but manufacturing large numbers of high quality cells remains challenging. Currently @@ -154,7 +168,6 @@ thesis lays the groundwork for a novel T cell expansion method which can be used in a clinical setting, and also provides a path toward optimizing for product quality in an industrial setting. - \clearpage \tableofcontents @@ -169,8 +182,9 @@ quality in an industrial setting. \clearpage -\twocolumn -\section*{acronyms} +% \twocolumn +\chapter*{acronyms} +\addcontentsline{toc}{chapter}{acronyms} \printglossary[type=\acronymtype] @@ -179,82 +193,82 @@ quality in an industrial setting. \clearpage -\section{introduction} +\chapter{introduction} -\subsection*{overview} +\section*{overview} Insert overview here -\subsection*{hypothesis} +\section*{hypothesis} Insert hypothesis here -\subsection*{specific aims} -\subsubsection*{aim 1} -\subsubsection*{aim 2} -\subsubsection*{aim 3} +\section*{specific aims} +\subsection*{aim 1} +\subsection*{aim 2} +\subsection*{aim 3} -\subsection*{outline} +\section*{outline} -\subsubsection*{Aim 1} +\subsection*{Aim 1} Aim 1 -\subsubsection*{Aim 2} +\subsection*{Aim 2} Aim 2 -\subsubsection*{Aim 3} +\subsection*{Aim 3} Aim 3 -\section{background and significance} -\subsubsection*{background} -\subsubsection*{current T cell manufacturing technologies} +\chapter{background and significance} +\subsection*{background} +\subsection*{current T cell manufacturing technologies} bla bla -\subsection*{strategies to optimize cell manufacturing} +\section*{strategies to optimize cell manufacturing} bla bla -\subsubsection*{strategies to characterize cell manufacturing} +\subsection*{strategies to characterize cell manufacturing} bla bla -\subsection{Innovation} +\section{Innovation} -\section{aim 1} +\chapter{aim 1} -\subsection{introduction} -\subsection{methods} -\subsection{results} -\subsection{discussion} +\section{introduction} +\section{methods} +\section{results} +\section{discussion} -\section{Aim 2} +\chapter{Aim 2} -\subsection{introduction} -\subsection{methods} -\subsection{results} -\subsection{discussion} +\section{introduction} +\section{methods} +\section{results} +\section{discussion} -\section{Aim 3} +\chapter{Aim 3} -\subsection{introduction} -\subsection{methods} -\subsection{results} -\subsection{discussion} +\section{introduction} +\section{methods} +\section{results} +\section{discussion} -\section{conclusions and future work} -\subsection{conclusions} -\subsection{future work} +\chapter{conclusions and future work} +\section{conclusions} +\section{future work} \onecolumn \clearpage % TODO some people put appendices here....not sure if I need to -\section{References} +\chapter{References} \renewcommand{\section}[2]{} % noop the original bib section header \bibliography{../proposal}