diff --git a/tex/thesis.tex b/tex/thesis.tex index a604fb1..23ed8c9 100644 --- a/tex/thesis.tex +++ b/tex/thesis.tex @@ -1669,8 +1669,8 @@ quantified for \gls{stp} protein using the \gls{bca} assay. The geometric diffusivity of the microcarriers was determined using a pseudo-steady-state model. Each microcarrier was assumed to be a porous sphere -with a fixed number of uniformly distributed `\gls{stp} binding sites' equal to -the number of \gls{stp} molecules experimentally determined to bind to the +with a fixed number of uniformly distributed ``\gls{stp} binding sites'' equal +to the number of \gls{stp} molecules experimentally determined to bind to the microcarriers. Because the reaction rate between biotin and \gls{stp} is so fast (it is the strongest non-covalent bond in known existence), we assumed that the interface of free biotin shrunk as a function of \gls{stp} diffusing to the @@ -1679,10 +1679,9 @@ also assumed that the pores in the microcarriers were large enough that the interactions between the \gls{stp} and surfaces would be small, thus the geometric diffusivity could be represented as a fraction of the diffusion coefficient of \gls{stp} in water. This model was given by -\cref{eqn:stp_diffusion_1,eqn:stp_diffusion_2}: +\cref{eqn:stp_diffusion_1,eqn:stp_diffusion_2} (see \cref{sec:appendix_binding} +for derivations): -% TODO actually derive these equations, eg state the initial conditions and -% governing equation \begin{equation} \label{eqn:stp_diffusion_1} \frac{dr}{dt} = \frac{-D_{app}C_b}{Br(1-r/R)} @@ -3717,7 +3716,6 @@ group, while the \gls{colb} group visibly lowered CD62L and CD4, indicating partial enzymatic cleavage (\cref{fig:collagenase_fx}). Based on this result, we used \gls{cold} moving forward. -% FIGURE this figure is tall and skinny like me \begin{figure*}[ht!] \begingroup @@ -4867,7 +4865,6 @@ Python, with a subprocess running R in a Docker container to handle the flow cytometry data (\cref{fig:meta_overview}). The Postgres database itself was hosted using \gls{aws} using their proprietary Aurora implementation. -% FIGURE explain what the colors mean \begin{figure*}[ht!] \begingroup