Dan Davison
6f9985a749
Synching org-babel.org across branches
2009-06-13 19:01:06 -04:00
Eric Schulte
3b026b806e
shell source blocks no longer hang
2009-06-13 14:49:57 -07:00
Eric Schulte
8ec719aefb
passing all tests, but have a couple more tasks before merge
...
1) broke reading from #+resname lines
2) shell sometimes stalls indefinitely
3) need condition-case for safe removal of filter when C-g during execution
4) need to add tests for session behavior
2009-06-12 17:02:37 -07:00
Eric Schulte
d261e178e9
passing all but one test
2009-06-12 16:50:53 -07:00
Eric Schulte
66162b2e4e
more looking into the remaining errors
2009-06-12 16:42:56 -07:00
Eric Schulte
b7c32fc5d8
passing almost all tests
2009-06-12 16:34:06 -07:00
Eric Schulte
d41466e5bc
now really passing all basic tests
2009-06-12 16:23:28 -07:00
Eric Schulte
8f9ae7314a
now passing basic-ruby test
2009-06-12 16:08:51 -07:00
Eric Schulte
5675e56585
sessions are now working in R
2009-06-12 15:31:52 -07:00
Eric Schulte
9623b16914
fixed some weird long-prompt issues with shell comint buffer
2009-06-12 15:20:23 -07:00
Eric Schulte
2dea1ea367
shell is now handling multiple sessions
2009-06-12 14:56:30 -07:00
Eric Schulte
f4798d3e83
python can now handle multiple sessions
2009-06-12 14:49:11 -07:00
Eric Schulte
368cdd2a3e
brought in org-babel.org changes from master
2009-06-12 13:35:04 -07:00
Eric Schulte
8093091103
DONE rework evaluation lang-by-lang [4/4]
2009-06-12 13:10:33 -07:00
Eric Schulte
431715e6db
shell support is pretty much working
2009-06-12 13:09:20 -07:00
Eric Schulte
b64be81363
moving language-specific files into their own directory
2009-06-12 08:59:38 -07:00
Eric Schulte
1be99d1b35
python is basically up to snuff (needs more work on sessions)
2009-06-12 08:46:00 -07:00
Eric Schulte
190a66c6af
ruby now respects the scalar/vector :results header arguments
2009-06-12 08:33:51 -07:00
Eric Schulte
82e7c86ea3
R evaluation is pretty much up to snuff
2009-06-12 08:29:21 -07:00
Eric Schulte
86e4597a7a
R results now obey the scalar/vector :results header arguments
2009-06-12 08:10:54 -07:00
Eric Schulte
e0dcbce75e
evaluation is working in R capturing both outputs and values
2009-06-12 07:55:33 -07:00
Eric Schulte
005e682948
making progress bringing org-babel-R.el into the new evaluation schema
2009-06-11 17:04:42 -07:00
Eric Schulte
2c1b04eecb
ruby is now working with sessions, output-based-results, and value(functional)-based-results
2009-06-11 15:34:34 -07:00
Eric Schulte
6698edbe83
finally think I'm on the right track for output vs. values, mostly working w/ruby
...
- moved ruby functions into their own buffer
- removed org-babel-sessions.el
- drastically scaled down org-babel-comint.el (may grow later if we
find duplication between language buffers)
- removed org-babel-script.el
- adjusted org-babel-init.el to reflect new file layout
For the big breakthrough see `org-babel-ruby-evaluate' in
org-babel-ruby.el. This will be the model upon which all future
language evaluations will be built.
2009-06-11 15:15:59 -07:00
Eric Schulte
8d0fd18933
working on org-babel-comint for automatically keeping a ring
2009-06-10 17:27:06 -07:00
Eric Schulte
9c70974391
started working on ruby 'script' execution
2009-06-09 16:33:36 -07:00
Eric Schulte
f3da4d0321
functional results now working with org-babel-comint and org-babel-script
2009-06-09 16:10:43 -07:00
Eric Schulte
39d1674f30
org-babel-R is now able to assign variables
2009-06-09 15:28:59 -07:00
Eric Schulte
d3f1d07066
org-babel-R can now run in 'script' mode
2009-06-09 15:02:01 -07:00
Eric Schulte
ccddf78dca
the script/functional return values should be handled by header arguments
...
also, an echo header (like in R) argument would probably be
appropriate as well.
2009-06-08 17:58:53 -07:00
Eric Schulte
d724ca921a
tweaking tasks for sessions and script/functional evaluation
2009-06-08 16:38:13 -07:00
Eric Schulte
e6729c1cae
even more thoughts on evaluation, results, models and options
2009-06-08 16:31:13 -07:00
Dan Davison
4446fd1f07
new TODO: figure out how to handle errors during evaluation
2009-06-06 21:29:35 -04:00
Dan Davison
d0938cc70d
More thoughts on scripting vs. functional approaches in org-babel
2009-06-06 21:21:21 -04:00
Eric Schulte
c175d3ce0d
playing with org-babel-script and comint buffers/functions
2009-06-03 17:37:50 -07:00
Eric Schulte
2a663b9e09
R is now using last output (with default session) and passing all tests
2009-06-03 15:59:27 -07:00
Eric Schulte
49db1e523c
Merge branch 'master' into session
...
Conflicts:
org-babel.org
2009-06-03 15:30:10 -07:00
Eric Schulte
b1c103890c
*even more* discussion of session implementation issues
2009-06-03 15:23:45 -07:00
Dan Davison
8ac2a7daa6
Added another multilingual example. One issue is that spaces in the string cause vector output.
2009-06-03 12:33:58 -04:00
Dan Davison
21d01aea91
Some notes on possible support for named fields / rows / columns in org-babel and supported languages. These are just preliminary and don't outline a solution. My feeling is that this will require a bit more thought to avoid being an unrigorous hack.
2009-06-03 11:32:24 -04:00
Eric Schulte
bbf89dea08
fixed type in org-babel.org
2009-06-02 20:50:10 -07:00
Eric Schulte
dccbe633c9
discuss complication of mixing functional and imperative block evaluation
2009-06-02 20:34:20 -07:00
Eric Schulte
517253a2d0
beginning to add sessions
2009-06-02 16:28:56 -07:00
Eric Schulte
bba80bb837
working on sessions
2009-06-02 16:26:57 -07:00
Dan Davison
0df550d84c
Minor updates and responses in the sessions planning subtree.
2009-06-02 16:45:31 -04:00
Eric Schulte
37758310e0
planning *session* task order, and separating "*Org Edit Src Example* buffer" tasks
2009-06-01 17:58:37 -07:00
Eric Schulte
fcd5e8f272
fleshing out the *sessions* discussion and TODOs
2009-06-01 17:28:34 -07:00
Eric Schulte
c38294d21f
DONE Remove protective commas from # comments before evaluating
2009-06-01 16:56:59 -07:00
Dan Davison
8fef1f0509
More notes on sessions: need for header arg evaluation when we edit code, and need for removing protective commas
2009-06-01 15:14:35 -04:00
Dan Davison
f03e3ed603
Further notes on org-babel session and ESS and *Org Edit Src Example* buffers.
2009-05-31 18:07:13 -04:00
Dan Davison
ce96d45374
Added reminder/request that we bear ESS in mind when designing org-babel 'sessions'
2009-05-31 17:48:00 -04:00
Dan Davison
e7f860cb19
Altered the python code in the chained references example. AIui the example was producing the correct answer (ruby class Array) but for the wrong reason (python was returning None)
2009-05-30 15:01:55 -04:00
Eric Schulte
f87a673c9c
replacing parts of org-babel lost in a merge
...
namely some extended discussion of environments and sessions under
the "Create objects in top level (global) environment in R?" header
2009-05-29 18:01:38 -07:00
Eric Schulte
2fe76cd094
adding discussion to PROPOSED conversion between org-babel and noweb (e.g. .Rnw) format
2009-05-29 17:45:25 -07:00
Eric Schulte
986fcb4652
DONE pass multiple reference arguments into R
...
This should be working, see the following example...
n + m
: 10
2009-05-29 16:45:03 -07:00
Dan Davison
fe22667f78
proposed org-babel <-> noweb interconversions
2009-05-29 16:22:09 -04:00
Dan Davison
8deae3517b
Trying to resolve conflict while understanding very little about git
2009-05-29 16:21:12 -04:00
Dan Davison
2adb00f678
proposed org-babel <-> noweb interconversions
2009-05-29 16:17:03 -04:00
Eric Schulte
e8e24c024b
added TODO fully purge org-babel-R of direct comint interaction
2009-05-27 19:01:29 -07:00
Eric Schulte
c5a58ad6aa
moving generalized comint functions to new file org-babel-comint.el
2009-05-27 19:00:13 -07:00
Eric Schulte
a54c27ec91
attempts at improving sb snippet
2009-05-27 18:42:15 -07:00
Eric Schulte
aca19b2efc
added my session thoughts for global variables
2009-05-27 16:40:47 -07:00
Eric Schulte
906c524234
Merge branch 'master' of git@github.com:eschulte/org-babel
...
Conflicts:
org-babel.org
2009-05-27 16:40:26 -07:00
Eric Schulte
2d1a5405d1
added task for improving the sb snippet
2009-05-27 16:33:22 -07:00
Dan Davison
5db027b3e1
Noted in hline TODO that plotting histogram in the grades example is blocked by not being able to deal with hline in the input table. (AIUI)
2009-05-26 19:40:47 -04:00
Dan Davison
57783f9ce2
A few new TODOS: deal with hlines in tables, how do we pass multiple args in R, and some extended wittering about scoping issues in R: basically I want to argue for not abandoning the Sweave-style mode where objects created in code blocks are persisten across different blocks.
2009-05-26 19:16:46 -04:00
Eric Schulte
db9f189649
fixed bug: DONE R-code broke on "org-babel" rename
2009-05-25 19:23:30 -07:00
Eric Schulte
aec7ec05d3
more fleshing out of the introduction
2009-05-25 18:20:32 -07:00
Eric Schulte
b5174f5a7d
misc changes
2009-05-25 15:13:56 -07:00
Eric Schulte
02634f7d85
tweaked grades example (need some R help in plotting histogram)
2009-05-24 15:47:21 -07:00
Eric Schulte
28c29ee51e
added another example
2009-05-24 15:40:54 -07:00
Eric Schulte
9aa713be8c
updated tag line
2009-05-24 14:10:03 -07:00
Eric Schulte
6614df037f
now passing all tests with new name "org-babel"
2009-05-24 14:08:02 -07:00
Eric Schulte
9247200bb0
renaming the org-babel/ directory to the lisp/ directory
2009-05-24 13:56:20 -07:00
Eric Schulte
6451d2df1a
more cleanup and removal of the term "litorgy"
2009-05-24 13:52:51 -07:00
Eric Schulte
36eb5751d8
re-organizing main org-babel.org file
...
- replacing litorgy with org-babel
- splitting old requirements discussion into separate file
2009-05-24 13:48:29 -07:00
Eric Schulte
10bc87beac
adding introduction (from litorgy.org) to main org-babel.org file
2009-05-24 13:43:56 -07:00
Eric Schulte
4136f27680
renamed main rorg.org to org-babel.org
2009-05-24 13:42:56 -07:00