112c7d9236
fixed non-session variable assignment in R
2009-06-15 12:17:58 -07:00
b8b8540892
some tests are failing with the new session :none stuff
2009-06-15 11:53:53 -07:00
82ecab19fb
R is working with no session
2009-06-15 11:49:06 -07:00
e2d3cc7830
shell commands are working
2009-06-15 11:29:25 -07:00
f2aaba8ca6
adding support for python with :session none
2009-06-15 11:14:32 -07:00
2fd494477b
cleaned up ruby
2009-06-15 10:54:14 -07:00
00365e1fbe
ruby can now be run with NO session
2009-06-15 10:13:48 -07:00
b60d873724
just getting started
2009-06-15 09:28:01 -07:00
ec38cffff0
not yet working
2009-06-14 22:06:11 -07:00
7984724a2b
expanding ** PROPOSED add =:none= session argument (for purely functional execution)
2009-06-14 18:57:41 -07:00
e985ff2014
response to shell-prompt-regexp bug
2009-06-14 18:48:43 -07:00
623831ddab
added util directory, including newest inf-ruby.el, should fix ruby bug
2009-06-14 18:42:44 -07:00
c89a69b266
Shell problem with escape chars in prompt is still there.
2009-06-14 19:29:34 -04:00
9040c8d246
re-organizing and re-categorizing TODOs under the task section
2009-06-14 12:36:46 -07:00
66d9bd1fb6
replies to new bugs
2009-06-14 12:22:11 -07:00
0866961436
Merge branch 'session' of git@github.com:eschulte/org-babel into session
...
Conflicts:
lisp/langs/org-babel-sh.el
org-babel.org
2009-06-14 12:16:17 -07:00
8360a676b9
passing all tests
2009-06-14 12:09:36 -07:00
a85cadced8
*** DONE function to bring up inferior-process buffer [4/4]
2009-06-14 12:02:25 -07:00
e962e83741
adding pop/prep session commands to org-babel-shell.el
2009-06-14 11:53:56 -07:00
88048186ac
R know how to prep and pop-to sessions
2009-06-14 11:48:11 -07:00
70cc6cb90f
A couple of bug reports.
...
(1) Shell evaluation is broken by weird escape chars in prompt;
(2) ruby evaluation not working for me as run-ruby expects one argument on my system.
Also fixed a harmless copy-paste error and whitespace adjustment to shorten lines.
2009-06-14 14:38:15 -04:00
2212742c54
python can now pop-to-session
2009-06-14 11:34:06 -07:00
d1bcb5e425
cleaned version of body is now added to kill ring
2009-06-14 11:10:09 -07:00
1b39a64fbe
ruby blocks can now pop to session buffer (optionally evaluating header-args)
2009-06-14 11:08:12 -07:00
5e41083bfa
adding ** TODO add =:none= session argument (for purely functional execution)
2009-06-14 10:32:10 -07:00
77c8f29968
** DONE test failing forcing vector results with =test-forced-vector-results= ruby code block
2009-06-14 10:24:29 -07:00
0019cc9c14
all tests seem to be passing
2009-06-14 10:23:44 -07:00
3cd99d0c2f
** DONE defunct R sessions
...
turns out I just had to use inferior-ess-send-input instead of comint-send-input
2009-06-14 10:20:59 -07:00
bf2b175ba8
fleshing out bug description
2009-06-14 10:05:26 -07:00
4a4046d73d
adding two bugs...
...
** TODO defunct R sessions
** TODO test failing forcing vector results with =test-forced-vector-results= ruby code block
2009-06-14 09:22:31 -07:00
d879ac0a12
seems to have passed all tests (I'm skeptical there still may be problems)
...
Specifically with the following two issues...
1) hanging on R code blocks when we have multiple R sessions in play
2) very occasionally the results of ruby code blocks are iffy
This whole session experience proves the general point that functional
code is easier to write and debug than code with state.
2009-06-14 09:18:42 -07:00
f31b3b2af2
fixed problem with new ruby sessions sometimes not initializing
2009-06-14 09:12:19 -07:00
8931657abf
adding bug: TODO ruby fails on first call to non-default session
2009-06-14 08:42:35 -07:00
0b75d89ccf
fixed error parsing empty results from ruby
2009-06-14 08:41:52 -07:00
08f92aebe5
passing some session tests, but still failing some tests
2009-06-13 19:35:48 -07:00
391f677fc7
`org-babel-comint-with-output' is now robust to errors
2009-06-13 18:28:06 -07:00
f4a1193a6e
now using org-babel-comint-with-output in org-babel-python.el
2009-06-13 17:30:02 -07:00
dd0392a4f2
extracted the "capture all output from comint session" behavior into a macro
2009-06-13 17:08:42 -07:00
6f9985a749
Synching org-babel.org across branches
2009-06-13 19:01:06 -04:00
3b026b806e
shell source blocks no longer hang
2009-06-13 14:49:57 -07:00
8ec719aefb
passing all tests, but have a couple more tasks before merge
...
1) broke reading from #+resname lines
2) shell sometimes stalls indefinitely
3) need condition-case for safe removal of filter when C-g during execution
4) need to add tests for session behavior
2009-06-12 17:02:37 -07:00
d261e178e9
passing all but one test
2009-06-12 16:50:53 -07:00
66162b2e4e
more looking into the remaining errors
2009-06-12 16:42:56 -07:00
b7c32fc5d8
passing almost all tests
2009-06-12 16:34:06 -07:00
d41466e5bc
now really passing all basic tests
2009-06-12 16:23:28 -07:00
8f9ae7314a
now passing basic-ruby test
2009-06-12 16:08:51 -07:00
5675e56585
sessions are now working in R
2009-06-12 15:31:52 -07:00
9623b16914
fixed some weird long-prompt issues with shell comint buffer
2009-06-12 15:20:23 -07:00
2dea1ea367
shell is now handling multiple sessions
2009-06-12 14:56:30 -07:00
f4798d3e83
python can now handle multiple sessions
2009-06-12 14:49:11 -07:00
368cdd2a3e
brought in org-babel.org changes from master
2009-06-12 13:35:04 -07:00
8093091103
DONE rework evaluation lang-by-lang [4/4]
2009-06-12 13:10:33 -07:00
431715e6db
shell support is pretty much working
2009-06-12 13:09:20 -07:00
b64be81363
moving language-specific files into their own directory
2009-06-12 08:59:38 -07:00
1be99d1b35
python is basically up to snuff (needs more work on sessions)
2009-06-12 08:46:00 -07:00
190a66c6af
ruby now respects the scalar/vector :results header arguments
2009-06-12 08:33:51 -07:00
82e7c86ea3
R evaluation is pretty much up to snuff
2009-06-12 08:29:21 -07:00
86e4597a7a
R results now obey the scalar/vector :results header arguments
2009-06-12 08:10:54 -07:00
e0dcbce75e
evaluation is working in R capturing both outputs and values
2009-06-12 07:55:33 -07:00
005e682948
making progress bringing org-babel-R.el into the new evaluation schema
2009-06-11 17:04:42 -07:00
2c1b04eecb
ruby is now working with sessions, output-based-results, and value(functional)-based-results
2009-06-11 15:34:34 -07:00
6698edbe83
finally think I'm on the right track for output vs. values, mostly working w/ruby
...
- moved ruby functions into their own buffer
- removed org-babel-sessions.el
- drastically scaled down org-babel-comint.el (may grow later if we
find duplication between language buffers)
- removed org-babel-script.el
- adjusted org-babel-init.el to reflect new file layout
For the big breakthrough see `org-babel-ruby-evaluate' in
org-babel-ruby.el. This will be the model upon which all future
language evaluations will be built.
2009-06-11 15:15:59 -07:00
8d0fd18933
working on org-babel-comint for automatically keeping a ring
2009-06-10 17:27:06 -07:00
9c70974391
started working on ruby 'script' execution
2009-06-09 16:33:36 -07:00
f3da4d0321
functional results now working with org-babel-comint and org-babel-script
2009-06-09 16:10:43 -07:00
39d1674f30
org-babel-R is now able to assign variables
2009-06-09 15:28:59 -07:00
d3f1d07066
org-babel-R can now run in 'script' mode
2009-06-09 15:02:01 -07:00
ccddf78dca
the script/functional return values should be handled by header arguments
...
also, an echo header (like in R) argument would probably be
appropriate as well.
2009-06-08 17:58:53 -07:00
d724ca921a
tweaking tasks for sessions and script/functional evaluation
2009-06-08 16:38:13 -07:00
e6729c1cae
even more thoughts on evaluation, results, models and options
2009-06-08 16:31:13 -07:00
4446fd1f07
new TODO: figure out how to handle errors during evaluation
2009-06-06 21:29:35 -04:00
d0938cc70d
More thoughts on scripting vs. functional approaches in org-babel
2009-06-06 21:21:21 -04:00
c175d3ce0d
playing with org-babel-script and comint buffers/functions
2009-06-03 17:37:50 -07:00
2a663b9e09
R is now using last output (with default session) and passing all tests
2009-06-03 15:59:27 -07:00
49db1e523c
Merge branch 'master' into session
...
Conflicts:
org-babel.org
2009-06-03 15:30:10 -07:00
b1c103890c
*even more* discussion of session implementation issues
2009-06-03 15:23:45 -07:00
8ac2a7daa6
Added another multilingual example. One issue is that spaces in the string cause vector output.
2009-06-03 12:33:58 -04:00
21d01aea91
Some notes on possible support for named fields / rows / columns in org-babel and supported languages. These are just preliminary and don't outline a solution. My feeling is that this will require a bit more thought to avoid being an unrigorous hack.
2009-06-03 11:32:24 -04:00
bbf89dea08
fixed type in org-babel.org
2009-06-02 20:50:10 -07:00
dccbe633c9
discuss complication of mixing functional and imperative block evaluation
2009-06-02 20:34:20 -07:00
517253a2d0
beginning to add sessions
2009-06-02 16:28:56 -07:00
bba80bb837
working on sessions
2009-06-02 16:26:57 -07:00
0df550d84c
Minor updates and responses in the sessions planning subtree.
2009-06-02 16:45:31 -04:00
37758310e0
planning *session* task order, and separating "*Org Edit Src Example* buffer" tasks
2009-06-01 17:58:37 -07:00
fcd5e8f272
fleshing out the *sessions* discussion and TODOs
2009-06-01 17:28:34 -07:00
c38294d21f
DONE Remove protective commas from # comments before evaluating
2009-06-01 16:56:59 -07:00
8fef1f0509
More notes on sessions: need for header arg evaluation when we edit code, and need for removing protective commas
2009-06-01 15:14:35 -04:00
f03e3ed603
Further notes on org-babel session and ESS and *Org Edit Src Example* buffers.
2009-05-31 18:07:13 -04:00
ce96d45374
Added reminder/request that we bear ESS in mind when designing org-babel 'sessions'
2009-05-31 17:48:00 -04:00
e7f860cb19
Altered the python code in the chained references example. AIui the example was producing the correct answer (ruby class Array) but for the wrong reason (python was returning None)
2009-05-30 15:01:55 -04:00
f87a673c9c
replacing parts of org-babel lost in a merge
...
namely some extended discussion of environments and sessions under
the "Create objects in top level (global) environment in R?" header
2009-05-29 18:01:38 -07:00
2fe76cd094
adding discussion to PROPOSED conversion between org-babel and noweb (e.g. .Rnw) format
2009-05-29 17:45:25 -07:00
986fcb4652
DONE pass multiple reference arguments into R
...
This should be working, see the following example...
n + m
: 10
2009-05-29 16:45:03 -07:00
fe22667f78
proposed org-babel <-> noweb interconversions
2009-05-29 16:22:09 -04:00
8deae3517b
Trying to resolve conflict while understanding very little about git
2009-05-29 16:21:12 -04:00
2adb00f678
proposed org-babel <-> noweb interconversions
2009-05-29 16:17:03 -04:00
e8e24c024b
added TODO fully purge org-babel-R of direct comint interaction
2009-05-27 19:01:29 -07:00
c5a58ad6aa
moving generalized comint functions to new file org-babel-comint.el
2009-05-27 19:00:13 -07:00
a54c27ec91
attempts at improving sb snippet
2009-05-27 18:42:15 -07:00
aca19b2efc
added my session thoughts for global variables
2009-05-27 16:40:47 -07:00
906c524234
Merge branch 'master' of git@github.com:eschulte/org-babel
...
Conflicts:
org-babel.org
2009-05-27 16:40:26 -07:00
2d1a5405d1
added task for improving the sb snippet
2009-05-27 16:33:22 -07:00
5db027b3e1
Noted in hline TODO that plotting histogram in the grades example is blocked by not being able to deal with hline in the input table. (AIUI)
2009-05-26 19:40:47 -04:00
57783f9ce2
A few new TODOS: deal with hlines in tables, how do we pass multiple args in R, and some extended wittering about scoping issues in R: basically I want to argue for not abandoning the Sweave-style mode where objects created in code blocks are persisten across different blocks.
2009-05-26 19:16:46 -04:00
db9f189649
fixed bug: DONE R-code broke on "org-babel" rename
2009-05-25 19:23:30 -07:00
aec7ec05d3
more fleshing out of the introduction
2009-05-25 18:20:32 -07:00
b5174f5a7d
misc changes
2009-05-25 15:13:56 -07:00
02634f7d85
tweaked grades example (need some R help in plotting histogram)
2009-05-24 15:47:21 -07:00
28c29ee51e
added another example
2009-05-24 15:40:54 -07:00
9aa713be8c
updated tag line
2009-05-24 14:10:03 -07:00
6614df037f
now passing all tests with new name "org-babel"
2009-05-24 14:08:02 -07:00
9247200bb0
renaming the org-babel/ directory to the lisp/ directory
2009-05-24 13:56:20 -07:00
6451d2df1a
more cleanup and removal of the term "litorgy"
2009-05-24 13:52:51 -07:00
36eb5751d8
re-organizing main org-babel.org file
...
- replacing litorgy with org-babel
- splitting old requirements discussion into separate file
2009-05-24 13:48:29 -07:00
10bc87beac
adding introduction (from litorgy.org) to main org-babel.org file
2009-05-24 13:43:56 -07:00
4136f27680
renamed main rorg.org to org-babel.org
2009-05-24 13:42:56 -07:00
Eric Schulte
Dan Davison