ENH update causal inference tables
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% Table created by stargazer v.5.2.2 by Marek Hlavac, Harvard University. E-mail: hlavac at fas.harvard.edu
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% Date and time: Fri, Jul 23, 2021 - 12:30:10 PM
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% Date and time: Fri, Aug 13, 2021 - 04:48:47 PM
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\begin{tabular}{@{\extracolsep{5pt}}lccc}
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\\[-1.8ex]\hline
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\hline \\[-1.8ex]
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% & \multicolumn{3}{c}{\textit{Dependent variable:}} \\
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% \cline{2-4}
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\\[-1.8ex] & log(Fold Change) & \ptmemp{} & \dpthp{} \\
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% \\[-1.8ex] & (1) & (2) & (3)\\
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\hline \\[-1.8ex]
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Activation Method [DMS] & 0.890$^{***}$ & 0.027$^{**}$ & 0.089$^{***}$ \\
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Bioreactor [Grex] & $-$1.712$^{***}$ & $-$0.464$^{***}$ & 0.333$^{***}$ \\
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Feed Criteria [Glucose] & $-$0.143 & $-$0.017 & $-$0.001 \\
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Activation Method [DMS] & 0.836$^{***}$ & 0.035$^{***}$ & 0.074$^{***}$ \\
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Bioreactor [Grex] & $-$1.719$^{***}$ & $-$0.463$^{***}$ & 0.331$^{***}$ \\
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Feed Criteria [Glucose] & $-$0.148 & $-$0.016 & $-$0.002 \\
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IL2 Feed Conc. [IU/ml] & $-$0.007$^{***}$ & 0.0002 & 0.001$^{***}$ \\
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CD19-CAR Transduced [True] & $-$1.015$^{***}$ & 0.585$^{***}$ & $-$0.171$^{***}$ \\
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Donor Age & 0.066$^{***}$ & $-$0.001 & $-$0.014$^{***}$ \\
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Donor BMI (kg/m2) & $-$0.265$^{***}$ & $-$0.045$^{***}$ & 0.070$^{***}$ \\
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Donor Gender & $-$2.213$^{***}$ & $-$0.190$^{***}$ & 0.391$^{***}$ \\
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Donor Demographic [Cauc.] & $-$1.325 & 0.498$^{***}$ & $-$0.289$^{***}$ \\
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Donor Demographic [Cauc./Pac. Isl.] & $-$4.154$^{***}$ & 0.646$^{***}$ & $-$0.251$^{**}$ \\
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Initial Cell Viability & $-$0.064$^{**}$ & $-$0.007$^{**}$ & 0.027$^{***}$ \\
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log(Initial CD4:CD8 Ratio) & $-$1.279$^{***}$ & 0.050 & 0.366$^{***}$ \\
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Media Age (days) & 0.0004 & $-$0.001$^{***}$ & 0.0002 \\
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Thaw Media Age (days) & $-$0.0005 & 0.001$^{***}$ & $-$0.0004$^{***}$ \\
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IL2 Reconstituted Age & $-$0.0001 & 0.00000 & 0.0002 \\
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Operator [2] & $-$0.651$^{***}$ & 0.044$^{*}$ & 0.034 \\
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Operator [3] & $-$0.343 & $-$0.201$^{***}$ & 0.180$^{***}$ \\
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Media Sampled [True] & $-$0.303 & $-$0.023 & 0.051 \\
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Constant & 18.988$^{***}$ & 1.765$^{***}$ & $-$4.737$^{***}$ \\
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CD19-CAR Transduced [True] & $-$1.038$^{***}$ & 0.589$^{***}$ & $-$0.178$^{***}$ \\
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Donor Age (years) & 0.066$^{***}$ & $-$0.001 & $-$0.014$^{***}$ \\
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Donor BMI (kg/m2) & $-$0.262$^{***}$ & $-$0.045$^{***}$ & 0.071$^{***}$ \\
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Donor Gender & $-$2.204$^{***}$ & $-$0.192$^{***}$ & 0.394$^{***}$ \\
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Donor Demographic [Cauc.] & $-$1.373$^{*}$ & 0.506$^{***}$ & $-$0.303$^{***}$ \\
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Donor Demographic [Cauc./Pac. Isl.] & $-$4.174$^{***}$ & 0.649$^{***}$ & $-$0.257$^{**}$ \\
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Initial Cell Viability & 1.355 & 0.408$^{***}$ & $-$0.716$^{***}$ \\
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log(Initial CD4:CD8 Ratio) & $-$0.064$^{**}$ & $-$0.007$^{**}$ & 0.027$^{***}$ \\
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Media Age (days) & $-$1.283$^{***}$ & 0.050 & 0.365$^{***}$ \\
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Thaw Media Age (days) & 0.0004 & $-$0.001$^{***}$ & 0.0002 \\
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IL2 Reconstituted Age & $-$0.0005 & 0.001$^{***}$ & $-$0.0004$^{***}$ \\
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Operator [2] & $-$0.0001 & 0.00000 & 0.0002$^{*}$ \\
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Operator [3] & $-$0.661$^{***}$ & 0.045$^{**}$ & 0.031 \\
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Media Sampled [True] & $-$0.317 & $-$0.205$^{***}$ & 0.188$^{***}$ \\
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luminex\_samples & $-$0.279 & $-$0.026 & 0.058 \\
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Constant & 19.077$^{***}$ & 1.751$^{***}$ & $-$4.712$^{***}$ \\
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\hline \\[-1.8ex]
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Observations & 162 & 162 & 162 \\
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R$^{2}$ & 0.764 & 0.872 & 0.864 \\
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Adjusted R$^{2}$ & 0.734 & 0.856 & 0.846 \\
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Residual Std. Error (df = 143) & 0.567 & 0.066 & 0.074 \\
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F Statistic (df = 18; 143) & 25.649$^{***}$ & 53.998$^{***}$ & 50.318$^{***}$ \\
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% Observations & 177 & 177 & 177 \\
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R$^{2}$ & 0.763 & 0.869 & 0.855 \\
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Adjusted R$^{2}$ & 0.735 & 0.853 & 0.837 \\
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% Residual Std. Error (df = 157) & 0.548 & 0.065 & 0.073 \\
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% F Statistic (df = 19; 157) & 26.660$^{***}$ & 54.664$^{***}$ & 48.594$^{***}$ \\
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\hline
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\hline \\[-1.8ex]
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\textit{Note:} & \multicolumn{3}{r}{$^{*}$p$<$0.1; $^{**}$p$<$0.05; $^{***}$p$<$0.01} \\
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@ -1,23 +1,23 @@
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% Table created by stargazer v.5.2.2 by Marek Hlavac, Harvard University. E-mail: hlavac at fas.harvard.edu
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% Date and time: Fri, Jul 23, 2021 - 12:30:08 PM
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% Date and time: Fri, Aug 13, 2021 - 04:48:45 PM
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\begin{tabular}{@{\extracolsep{5pt}}lccc}
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\\[-1.8ex]\hline
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\hline \\[-1.8ex]
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& \multicolumn{3}{c}{\textit{Dependent variable:}} \\
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\cline{2-4}
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% & \multicolumn{3}{c}{\textit{Dependent variable:}} \\
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% \cline{2-4}
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\\[-1.8ex] & log(Fold Change) & \ptmemp{} & \dpthp{} \\
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\\[-1.8ex] & (1) & (2) & (3)\\
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% \\[-1.8ex] & (1) & (2) & (3)\\
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\hline \\[-1.8ex]
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Activation Method [DMS] & 0.903$^{***}$ & 0.048$^{*}$ & 0.011 \\
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Bioreactor [Grex] & $-$1.623$^{***}$ & $-$0.277$^{***}$ & 0.242$^{***}$ \\
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Constant & 2.555$^{***}$ & 0.309$^{***}$ & $-$0.378$^{***}$ \\
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Activation Method [DMS] & 0.840$^{***}$ & 0.060$^{***}$ & 0.007 \\
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Bioreactor [Grex] & $-$1.676$^{***}$ & $-$0.262$^{***}$ & 0.242$^{***}$ \\
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Constant & 2.640$^{***}$ & 0.288$^{***}$ & $-$0.376$^{***}$ \\
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\hline \\[-1.8ex]
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Observations & 162 & 162 & 162 \\
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R$^{2}$ & 0.440 & 0.317 & 0.177 \\
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Adjusted R$^{2}$ & 0.433 & 0.308 & 0.167 \\
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Residual Std. Error (df = 159) & 0.827 & 0.144 & 0.172 \\
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F Statistic (df = 2; 159) & 62.589$^{***}$ & 36.884$^{***}$ & 17.111$^{***}$ \\
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% Observations & 177 & 177 & 177 \\
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R$^{2}$ & 0.437 & 0.292 & 0.179 \\
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Adjusted R$^{2}$ & 0.431 & 0.284 & 0.169 \\
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% Residual Std. Error (df = 174) & 0.803 & 0.143 & 0.165 \\
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% F Statistic (df = 2; 174) & 67.576$^{***}$ & 35.945$^{***}$ & 18.937$^{***}$ \\
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\hline
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\hline \\[-1.8ex]
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\textit{Note:} & \multicolumn{3}{r}{$^{*}$p$<$0.1; $^{**}$p$<$0.05; $^{***}$p$<$0.01} \\
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\end{tabular}
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\end{tabular}
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@ -4666,6 +4666,8 @@ The code is available here: \url{https://github.gatech.edu/ndwarshuis3/mdma}.
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\newcommand{\ligs}{\textit{ligands}}
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\newcommand{\rcps}{\textit{receptors}}
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% TODO make notation consistent
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To model binding kinetics of either \gls{stp} or \glspl{mab} (here called
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\ligs{}), each microcarrier was assumed to be a porous sphere with a given
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number of binding sites for the \ligs{} (here called \rcps{}). The \rcp{}/\lig{}
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