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tex/thesis.tex
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\documentclass[twocolumn]{article} % \documentclass[twocolumn]{article}
\usepackage[top=0.75in,left=0.75in,right=0.75in,bottom=0.9in]{geometry} \documentclass{report}
\usepackage[top=1in,left=1.5in,right=1in,bottom=1in]{geometry}
\usepackage{siunitx} \usepackage{siunitx}
\usepackage[acronym]{glossaries} \usepackage[acronym]{glossaries}
\usepackage[T1]{fontenc} \usepackage[T1]{fontenc}
@ -17,10 +18,12 @@
\doublespacing \doublespacing
\titleformat{\section}[block]{\bfseries\large}{}{0pt}{\uppercase} \titleformat{\chapter}[block]{\filcenter\bfseries\large}
\titleformat{\subsection}[block]{\bfseries\large}{}{0pt}{\titlecap} {\MakeUppercase{\chaptertitlename} \thechapter: }{0pt}{\uppercase}
\titleformat{\subsubsection}[block]{\itshape\large}{}{0pt}{\titlecap} % \titleformat{\chapter}[block]{\filcenter\bfseries\large}{}{0pt}{\uppercase}
\titleformat{\paragraph}[runin]{\bfseries\itshape}{}{0pt}{\titlecap} \titleformat{\section}[block]{\bfseries\large}{}{0pt}{\titlecap}
\titleformat{\subsection}[block]{\itshape\large}{}{0pt}{\titlecap}
\titleformat{\subsubsection}[runin]{\bfseries\itshape}{}{0pt}{\titlecap}
\setlist[description]{font=$\bullet$~\textbf\normalfont} \setlist[description]{font=$\bullet$~\textbf\normalfont}
@ -49,84 +52,95 @@
\begin{titlepage} \begin{titlepage}
\begin{singlespace} \begin{singlespace}
\begin{center} \begin{center}
\Large{
\huge\textbf{Optimizing T Cell Manufacturing and Quality Using \textbf{Optimizing T Cell Manufacturing and Quality Using
Functionalized Degradable Microscaffolds} Functionalized Degradable Microscaffolds}
\vfill \vfill
\LARGE Nathan John Dwarshuis, B.S. \\ A Dissertation \\
Presented to \\
The Academic Faculty \\
\vspace{1.5em} \vspace{1.5em}
\Large PhD Thesis \\ by
Doctor of Philosophy in Biomedical Engineering \\
Georgia Institute of Technology and Emory University
\vspace{1.5em} \vspace{1.5em}
\large\today Nathan John Dwarshuis, B.S. \\
\vfill \vfill
In Partial Fulfillment \\
of the Requirements for the Degree \\
Doctor of Philosophy in Biomedical Engineering in the \\
Wallace H. Coulter Department of Biomedical Engineering
\vfill
Georgia Institute of Technology and Emory University \\
August 2021
\vfill
COPYRIGHT \copyright{} BY NATHAN J. DWARSHUIS
}
\end{center} \end{center}
\large{ % \large{
\noindent % \noindent
Committee Members % Committee Members
\vspace{1.5em} % \vspace{1.5em}
\noindent % \noindent
Dr. Krishnendu Roy (Advisor) \\ % Dr. Krishnendu Roy (Advisor) \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia % Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University % Institute of Technology and Emory University
\vspace{1.5em} % \vspace{1.5em}
\noindent % \noindent
Dr. Madhav Dhodapkar \\ % Dr. Madhav Dhodapkar \\
Department of Hematology and Medical Oncology, Emory University % Department of Hematology and Medical Oncology, Emory University
\vspace{1.5em} % \vspace{1.5em}
\noindent % \noindent
Dr. Melissa Kemp \\ % Dr. Melissa Kemp \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia % Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University % Institute of Technology and Emory University
\vspace{1.5em} % \vspace{1.5em}
\noindent % \noindent
Dr. Wilbur Lam \\ % Dr. Wilbur Lam \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia % Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University % Institute of Technology and Emory University
\vspace{1.5em} % \vspace{1.5em}
\noindent % \noindent
Dr. Sakis Mantalaris \\ % Dr. Sakis Mantalaris \\
Wallace H. Coulter Department of Biomedical Engineering, Georgia % Wallace H. Coulter Department of Biomedical Engineering, Georgia
Institute of Technology and Emory University } % Institute of Technology and Emory University }
\end{singlespace} \end{singlespace}
\end{titlepage} \end{titlepage}
\onecolumn \pagenumbering{roman} \onecolumn \pagenumbering{roman}
\clearpage \clearpage
% TODO \chapter*{acknowledgements}
Insert witty quote here \addcontentsline{toc}{chapter}{acknowledgements}
\clearpage
\section*{acknowledgements}
Thank you to Lex Fridman and Devin Townsend for being awesome and inspirational. Thank you to Lex Fridman and Devin Townsend for being awesome and inspirational.
\clearpage \clearpage
\section*{abstract} \chapter*{summary}
\addcontentsline{toc}{chapter}{summary}
\Gls{act} using \gls{car} T cells have shown promise in treating cancer, but \Gls{act} using \gls{car} T cells have shown promise in treating cancer, but
manufacturing large numbers of high quality cells remains challenging. Currently manufacturing large numbers of high quality cells remains challenging. Currently
@ -154,7 +168,6 @@ thesis lays the groundwork for a novel T cell expansion method which can be used
in a clinical setting, and also provides a path toward optimizing for product in a clinical setting, and also provides a path toward optimizing for product
quality in an industrial setting. quality in an industrial setting.
\clearpage \clearpage
\tableofcontents \tableofcontents
@ -169,8 +182,9 @@ quality in an industrial setting.
\clearpage \clearpage
\twocolumn % \twocolumn
\section*{acronyms} \chapter*{acronyms}
\addcontentsline{toc}{chapter}{acronyms}
\printglossary[type=\acronymtype] \printglossary[type=\acronymtype]
@ -179,82 +193,82 @@ quality in an industrial setting.
\clearpage \clearpage
\section{introduction} \chapter{introduction}
\subsection*{overview} \section*{overview}
Insert overview here Insert overview here
\subsection*{hypothesis} \section*{hypothesis}
Insert hypothesis here Insert hypothesis here
\subsection*{specific aims} \section*{specific aims}
\subsubsection*{aim 1} \subsection*{aim 1}
\subsubsection*{aim 2} \subsection*{aim 2}
\subsubsection*{aim 3} \subsection*{aim 3}
\subsection*{outline} \section*{outline}
\subsubsection*{Aim 1} \subsection*{Aim 1}
Aim 1 Aim 1
\subsubsection*{Aim 2} \subsection*{Aim 2}
Aim 2 Aim 2
\subsubsection*{Aim 3} \subsection*{Aim 3}
Aim 3 Aim 3
\section{background and significance} \chapter{background and significance}
\subsubsection*{background} \subsection*{background}
\subsubsection*{current T cell manufacturing technologies} \subsection*{current T cell manufacturing technologies}
bla bla bla bla
\subsection*{strategies to optimize cell manufacturing} \section*{strategies to optimize cell manufacturing}
bla bla bla bla
\subsubsection*{strategies to characterize cell manufacturing} \subsection*{strategies to characterize cell manufacturing}
bla bla bla bla
\subsection{Innovation} \section{Innovation}
\section{aim 1} \chapter{aim 1}
\subsection{introduction} \section{introduction}
\subsection{methods} \section{methods}
\subsection{results} \section{results}
\subsection{discussion} \section{discussion}
\section{Aim 2} \chapter{Aim 2}
\subsection{introduction} \section{introduction}
\subsection{methods} \section{methods}
\subsection{results} \section{results}
\subsection{discussion} \section{discussion}
\section{Aim 3} \chapter{Aim 3}
\subsection{introduction} \section{introduction}
\subsection{methods} \section{methods}
\subsection{results} \section{results}
\subsection{discussion} \section{discussion}
\section{conclusions and future work} \chapter{conclusions and future work}
\subsection{conclusions} \section{conclusions}
\subsection{future work} \section{future work}
\onecolumn \onecolumn
\clearpage \clearpage
% TODO some people put appendices here....not sure if I need to % TODO some people put appendices here....not sure if I need to
\section{References} \chapter{References}
\renewcommand{\section}[2]{} % noop the original bib section header \renewcommand{\section}[2]{} % noop the original bib section header
\bibliography{../proposal} \bibliography{../proposal}