ADD conda envs for various misdeeds

This commit is contained in:
Nathan Dwarshuis 2023-03-10 12:13:14 -05:00
parent 7654090e17
commit b4b8a88f12
3 changed files with 31 additions and 0 deletions

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name: giab-tools
channels:
- conda-forge
- bioconda
dependencies:
- bedtools=2.30.0
- samtools=1.15.1
- vcftools=0.1.16
- globus-cli=3.11.0
- jupyter_server=2.0.1
- notebook=6.5.3

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# minimal requirements for developing python scripts
name: python-dev
channels:
- conda-forge
dependencies:
- python=3.11
- black=23.1.0
- flake8=6.0.0
- mypy=1.1.1
- ipython=8.11.0

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# minimal requirements for developing r scripts
name: r-dev
channels:
- conda-forge
dependencies:
- r-base=4.2.2
- r-tidyverse=2.0.0
- r-styler=1.9.1
- r-lintr=3.0.2
- r-ggpubr=0.6.0